ID J04692; SV 1; linear; genomic RNA; STD; VRL; 4579 BP. XX AC J04692; XX DT 23-NOV-1989 (Rel. 21, Created) DT 05-OCT-1999 (Rel. 61, Last updated, Version 5) XX DE Saccharomyces cerevisiae virus L-A major coat protein, ssRNA-binding DE protein, and RNA polymerase genes, complete cds. XX KW major coat protein; RNA polymerase; ssRNA-binding protein. XX OS Saccharomyces cerevisiae virus L-A OC Viruses; Riboviria; Totiviridae; Totivirus. XX RN [1] RP 1-4579 RX PUBMED; 2651431. RA Icho T., Wickner R.B.; RT "The double-stranded RNA genome of yeast virus L-A encodes its own putative RT RNA polymerase by fusing two open reading frames"; RL J Biol Chem 264(12):6716-6723(1989). XX DR MD5; 9fad91b82ead61edad39d72a04fe5155. DR EuropePMC; PMC2526308; 17570970. DR EuropePMC; PMC3126235; 21345965. DR EuropePMC; PMC312828; 11711434. DR EuropePMC; PMC3393542; 22496220. DR EuropePMC; PMC3659425; 20976609. DR EuropePMC; PMC4019141; 24574403. DR EuropePMC; PMC4911473; 27313294. DR EuropePMC; PMC6213463; 30332789. DR EuropePMC; PMC6356713; 30585188. XX CC On Oct 14, 1994 this sequence version replaced gi:340546. XX FH Key Location/Qualifiers FH FT source 1..4579 FT /organism="Saccharomyces cerevisiae virus L-A" FT /mol_type="genomic RNA" FT /clone="pTIL05" FT /db_xref="taxon:11008" FT CDS join(30..1961,1961..4546) FT /codon_start=1 FT /product="ssRNA-binding protein" FT /db_xref="GOA:Q87022" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR015302" FT /db_xref="InterPro:IPR036332" FT /db_xref="UniProtKB/Swiss-Prot:Q87022" FT /protein_id="AAA50507.1" FT /translation="MLRFVTKNSQDKSSDLFSICSDRGTFVAHNRVRTDFKFDNLVFNR FT VYGVSQKFTLVGNPTVCFNEGSSYLEGIAKKYLTLDGGLAIDNVLNELRSTCGIPGNAV FT ASHAYNITSWRWYDNHVALLMNMLRAYHLQVLTEQGQYSAGDIPMYHDGHVKIKLPVTI FT DDTAGPTQFAWPSDRSTDSYPDWAQFSESFPSIDVPYLDVRPLTVTEVNFVLMMMSKWH FT RRTNLAIDYEAPQLADKFAYRHALTVQDADEWIEGDRTDDQFRPPSSKVMLSALRKYVN FT HNRLYNQFYTAAQLLAQIMMKPVPNCAEGYAWLMHDALVNIPKFGSIRGRYPFLLSGDA FT ALIQATALEDWSAIMAKPELVFTYAMQVSVALNTGLYLRRVKKTGFGTTIDDSYEDGAF FT LQPETFVQAALACCTGQDAPLNGMSDVYVTYPDLLEFDAVTQVPITVIEPAGYNIVDDH FT LVVVGVPVACSPYMIFPVAAFDTANPYCGNFVIKAANKYLRKGAVYDKLEAWKLAWALR FT VAGYDTHFKVYGDTHGLTKFYADNGDTWTHIPEFVTDGDVMEVFVTAIERRARHFVELP FT RLNSPAFFRSVEVSTTIYDTHVQAGAHAVYHASRINLDYVKPVSTGIQVINAGELKNYW FT GSVRRTQQGFRSGRSYDASCNAYRRTYSWRCPRRVDRTGGQCFSRVNVIEPSHGPRPTR FT YILQEPGTYPAWIRFRNRVQAVSRQKATHFLFDIVPAAVISDFTTSDTSSFAYKSHTYA FT VNVTALRFSDTYALYVQTDTNMTILSPAARRQASATYSQVAGFCYNTPTVMDSLANILD FT VDRNIRPKHFKGLRLYTRSKVTAQHHTHLRPDELVEAAAKVSPRRKYYLMCVVELLANL FT QVDLEAAVATILAYVLTLSEKFVPIFLDSRAIWVGEPGPDALTARLKASSGQIKSIHTA FT DYEPLTELFELAVLMNRGVGHVSWQAEKDHRLNPDVAVVDQARLYSCVRDMFEGSKQTY FT KYPFMTWDDYTANRWEWVPGGSVHSQYEEDNDYIYPGQYTRNKFITVNKMPKHKISRMI FT ASPPEVRAWTSTKYEWGKQRAIYGTDLRSTLITNFAMFRCEDVLTHKFPVGDQAEAAKV FT HKRVNMMLDGASSFCFDYDDFNSQHSIASMYTVLCAFRDTFSRNMSDEQAEAMNWVCES FT VRHMWVLDPDTKEWYRLQGTLLSGWRLTTFMNTVLNWAYMKLAGVFDLDDVQDSVHNGD FT DVMISLNRVSTAVRIMDAMHRINARAQPAKCNLFSISEFLRVEHGMSGGDGLGAQYLSR FT SCATLVHSRIESNEPLSVVRVMEADQARLRDLANRTRVQSAVTAIKEQLDKRVTKIFGV FT GDDVVRDIHTAHRVCGGISTDTWAPVETKIITDNEAYEIPYEIDDPSFWPGVNDYAYKV FT WKNFGERLEFNKIKDAVARGSRSTIALKRKARITSKKNEFANKSEWERTMYKAYKGLAV FT SYYANLSKFMSIPPMANIEFGQARYAMQAALDSSDPLRALQVIL" FT CDS 30..2072 FT /codon_start=1 FT /product="major coat protein" FT /db_xref="GOA:P32503" FT /db_xref="InterPro:IPR015302" FT /db_xref="InterPro:IPR036332" FT /db_xref="PDB:1M1C" FT /db_xref="UniProtKB/Swiss-Prot:P32503" FT /protein_id="AAA50506.1" FT /translation="MLRFVTKNSQDKSSDLFSICSDRGTFVAHNRVRTDFKFDNLVFNR FT VYGVSQKFTLVGNPTVCFNEGSSYLEGIAKKYLTLDGGLAIDNVLNELRSTCGIPGNAV FT ASHAYNITSWRWYDNHVALLMNMLRAYHLQVLTEQGQYSAGDIPMYHDGHVKIKLPVTI FT DDTAGPTQFAWPSDRSTDSYPDWAQFSESFPSIDVPYLDVRPLTVTEVNFVLMMMSKWH FT RRTNLAIDYEAPQLADKFAYRHALTVQDADEWIEGDRTDDQFRPPSSKVMLSALRKYVN FT HNRLYNQFYTAAQLLAQIMMKPVPNCAEGYAWLMHDALVNIPKFGSIRGRYPFLLSGDA FT ALIQATALEDWSAIMAKPELVFTYAMQVSVALNTGLYLRRVKKTGFGTTIDDSYEDGAF FT LQPETFVQAALACCTGQDAPLNGMSDVYVTYPDLLEFDAVTQVPITVIEPAGYNIVDDH FT LVVVGVPVACSPYMIFPVAAFDTANPYCGNFVIKAANKYLRKGAVYDKLEAWKLAWALR FT VAGYDTHFKVYGDTHGLTKFYADNGDTWTHIPEFVTDGDVMEVFVTAIERRARHFVELP FT RLNSPAFFRSVEVSTTIYDTHVQAGAHAVYHASRINLDYVKPVSTGIQVINAGELKNYW FT GSVRRTQQGLGVVGLTMPAVMPTGEPTAGAAHEELIEQADNVLVE" FT CDS 2351..4546 FT /codon_start=1 FT /product="RNA polymerase" FT /note="RNA-dependent RNA polymerase of icosahedral RNA FT viruses; putative" FT /db_xref="GOA:Q87022" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR015302" FT /db_xref="InterPro:IPR036332" FT /db_xref="UniProtKB/Swiss-Prot:Q87022" FT /protein_id="AAA50508.1" FT /translation="MTILSPAARRQASATYSQVAGFCYNTPTVMDSLANILDVDRNIRP FT KHFKGLRLYTRSKVTAQHHTHLRPDELVEAAAKVSPRRKYYLMCVVELLANLQVDLEAA FT VATILAYVLTLSEKFVPIFLDSRAIWVGEPGPDALTARLKASSGQIKSIHTADYEPLTE FT LFELAVLMNRGVGHVSWQAEKDHRLNPDVAVVDQARLYSCVRDMFEGSKQTYKYPFMTW FT DDYTANRWEWVPGGSVHSQYEEDNDYIYPGQYTRNKFITVNKMPKHKISRMIASPPEVR FT AWTSTKYEWGKQRAIYGTDLRSTLITNFAMFRCEDVLTHKFPVGDQAEAAKVHKRVNMM FT LDGASSFCFDYDDFNSQHSIASMYTVLCAFRDTFSRNMSDEQAEAMNWVCESVRHMWVL FT DPDTKEWYRLQGTLLSGWRLTTFMNTVLNWAYMKLAGVFDLDDVQDSVHNGDDVMISLN FT RVSTAVRIMDAMHRINARAQPAKCNLFSISEFLRVEHGMSGGDGLGAQYLSRSCATLVH FT SRIESNEPLSVVRVMEADQARLRDLANRTRVQSAVTAIKEQLDKRVTKIFGVGDDVVRD FT IHTAHRVCGGISTDTWAPVETKIITDNEAYEIPYEIDDPSFWPGVNDYAYKVWKNFGER FT LEFNKIKDAVARGSRSTIALKRKARITSKKNEFANKSEWERTMYKAYKGLAVSYYANLS FT KFMSIPPMANIEFGQARYAMQAALDSSDPLRALQVIL" XX SQ Sequence 4579 BP; 1296 A; 985 C; 1107 G; 1191 T; 0 other; gaaaaatttt taaattcata taactcccca tgctaagatt tgttactaaa aactctcaag 60 ataaatcgtc tgatctattc tctatttgtt ctgatcgcgg aacttttgtt gcccataata 120 gagttcggac tgatttcaag tttgacaact tagtattcaa ccgagtttat ggtgtttctc 180 aaaaatttac gttagtcggt aacccgacag tctgctttaa tgaaggcagt tcttacctag 240 aaggtattgc taaaaagtac ctaactttgg atggaggact tgccattgac aatgtcctca 300 atgagttgag atccacttgc ggtatcccag gtaatgctgt tgcatctcat gcgtataata 360 ttacatcctg gcgttggtat gacaatcacg tggcactgtt gatgaacatg ttgcgtgctt 420 accacttaca agtattgacc gaacagggcc aatatagcgc tggagatatc cctatgtacc 480 atgatggaca tgtcaaaatc aagctaccag tgactatcga tgacacggca ggcccaacac 540 aattcgcttg gcctagtgac aggtctactg attcgtatcc tgattgggca cagttttctg 600 aatcatttcc atcaatcgac gtcccgtacc tagatgttag gccattgacc gtaacggaag 660 tcaatttcgt gcttatgatg atgagtaagt ggcatagacg tactaactta gcgatagact 720 acgaggcacc ccaactagct gataagttcg cttaccgcca tgcgcttact gttcaagacg 780 ctgacgagtg gatagaaggc gatagaactg atgaccagtt ccgccccccc tcgtctaaag 840 taatgttatc ggcacttcgt aagtacgtga accataacag gctgtacaat cagttttaca 900 ctgcagcaca actgttagct caaattatga tgaaacctgt ccctaactgc gctgagggct 960 acgcttggct gatgcatgac gcattggtca atataccaaa atttgggtct attcgaggaa 1020 ggtacccctt tttgttatca ggtgatgcag cgttgattca ggctacagcc ctagaagact 1080 ggtctgctat catggcgaaa cccgagctgg tgttcactta cgcgatgcag gtgtcagtag 1140 cgttaaacac cggactatac ttacgtcgcg ttaagaaaac aggcttcggc acaactatag 1200 atgacagcta tgaagatgga gcgtttttgc aaccggagac gttcgttcag gccgcactag 1260 catgttgtac cggacaagat gcgcccctaa atgggatgtc agatgtgtat gtcacttatc 1320 cagatcttct agaatttgat gctgttacac aagtacccat cacggtcatt gagcccgctg 1380 gctataacat tgttgatgat catttagtgg ttgtgggtgt acctgtggca tgttcaccat 1440 acatgatatt tccagtagct gcgtttgata ctgcaaatcc ttactgtggg aattttgtca 1500 ttaaggctgc taacaagtat ctccgtaagg gtgccgtgta tgataaactc gaagcatgga 1560 agttggcctg ggcactgagg gtagccgggt atgacactca cttcaaagtg tatggcgata 1620 cacacggctt aactaagttc tatgctgaca acggtgacac atggacacac atacctgaat 1680 ttgtcactga cggtgacgtg atggaagtat tcgttactgc catcgaacgc agagctagac 1740 atttcgttga actacctaga ctgaattcac cagcattctt cagatctgta gaagtcagca 1800 ccactatata tgatactcat gtgcaggctg gtgcgcatgc ggtgtatcat gctagtcgaa 1860 tcaatcttga ttatgttaag cctgtttcga ccggcattca ggtgatcaat gcgggcgaac 1920 ttaagaacta ctggggtagt gtgcgtcgta ctcagcaggg tttaggagtg gtaggtctta 1980 cgatgccagc tgtaatgcct accggagaac ctacagctgg cgctgcccac gaagagttga 2040 tagaacaggc ggacaatgtt ttagtagagt aaacgtaatc gaaccctcac acggaccccg 2100 ccctacaagg tacatactgc aggaaccagg tacgtaccct gcgtggatta gattcaggaa 2160 cagagtacaa gctgtatcgc gtcagaaagc cactcacttc ttgtttgaca tcgtacctgc 2220 cgcagtaatt agtgatttta ctacgtctga cacgtcttcg tttgcataca aatcgcacac 2280 ctacgctgta aatgtaacag cattgaggtt cagtgacact tatgccttgt acgtacagac 2340 tgataccaac atgacaattt taagcccagc ggcgcgtcgc caggcttctg cgacgtactc 2400 acaggtggca gggttttgtt ataacacacc taccgttatg gattcgctag cgaatatctt 2460 ggacgtagac cgcaatatac gacccaaaca cttcaagggt ttacggctat acacaaggtc 2520 taaggtcact gctcaacatc atactcactt gcggccagac gagctagtgg aagcggccgc 2580 aaaggtctcg cctagacgta aatactactt aatgtgtgta gttgagctgc tcgcgaactt 2640 acaagtagat cttgaagcag cagtagctac tattctcgca tatgtcctga cactaagtga 2700 aaaatttgta ccaattttct tggattctag agcaatatgg gtcggtgagc ctgggcctga 2760 tgctctgact gcacgtctca aggccagtag tgggcagatc aagagcatac acacggctga 2820 ttacgaacca ctcactgaac tattcgagtt agcagtattg atgaaccgag gtgttggcca 2880 tgtctcttgg caagctgaaa aggatcatcg cttgaatccc gacgtggctg tagttgatca 2940 agcacggcta tattcgtgtg tgcgcgacat gttcgaagga tcaaagcaga cgtataaata 3000 tccctttatg acgtgggatg actacactgc aaacagatgg gagtgggttc caggtggcag 3060 tgtccactct caatacgaag aagacaacga ttatatctat cctggtcagt atactaggaa 3120 caagttcata actgttaaca aaatgcccaa acacaaaata tctagaatga tagcatcacc 3180 gcctgaggta cgagcttgga cgtcgacgaa gtacgaatgg ggcaagcaac gtgctatcta 3240 cgggacggat ctacgaagta cactgataac taactttgca atgttcaggt gcgaggatgt 3300 tctcactcac aagttcccag taggcgacca ggcagaggca gcaaaggtgc acaaacgggt 3360 gaacatgatg ctggacggtg cctctagttt ctgcttcgat tatgatgact tcaattctca 3420 gcattcaata gctagtatgt atacggtttt gtgcgctttc agggacacat ttagtcgcaa 3480 catgtctgat gaacaagcag aggcgatgaa ctgggtgtgt gagtccgtca gacacatgtg 3540 ggtactagat cctgatacca aggagtggta cagactacaa ggtacattac tgtcaggatg 3600 gcggttaacc acatttatga acactgtgct aaactgggcg tatatgaaat tagctggcgt 3660 atttgatctg gatgacgttc aagactcggt acacaacggt gatgatgtta tgattagtct 3720 caaccgcgtg agcacagcag taagaataat ggacgctatg caccggataa atgcgcgagc 3780 acagccggcg aagtgtaact tgttttcgat aagtgaattt ctgagggtag aacacggtat 3840 gagcggaggc gatggtcttg gggctcagta cttaagtagg tcttgtgcta ctcttgtaca 3900 cagtaggatt gagtctaacg aaccactgtc agtagtacga gttatggaag cagaccaggc 3960 tagattgcgc gacctggcaa acagaacgcg ggtacaatct gcggtaacag cgataaaaga 4020 acaactcgac aaacgtgtca ctaagatatt cggagttggt gatgacgttg tgcgcgacat 4080 acacacagct cacagggtgt gtggcggtat ctcgactgat acctgggcac cggttgaaac 4140 taagataata acagacaatg aagcatatga aataccatac gaaatagatg atccatcatt 4200 ttggccaggg gtaaatgatt atgcttataa agtctggaaa aatttcggag aacgactcga 4260 atttaataag attaaagatg ccgtagctag agggagtagg agcactatag ctctgaaacg 4320 taaggctagg ataacatcta agaagaatga attcgctaac aagtcggaat gggaaaggac 4380 aatgtacaaa gcctataagg gtttggcagt ctcatactat gctaacctga gcaaattcat 4440 gagtatacca ccaatggcga acattgaatt tgggcaggct agatatgcta tgcaagcagc 4500 ccttgatagt tctgatccac tccgggcatt acaggtcata ctgtaattgc caaaaagata 4560 atgggaatta cccatatgc 4579 //