ID J04375; SV 1; linear; genomic RNA; STD; VRL; 6211 BP. XX AC J04375; XX DT 20-JUN-1990 (Rel. 24, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Ononis yellow mosaic virus complete genome. XX KW complete genome; replicase; virion protein. XX OS Ononis yellow mosaic virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Tymovirus. XX RN [1] RP 1-6211 RX DOI; 10.1016/0042-6822(89)90198-0. RX PUBMED; 2800337. RA Ding S.-W., Keese P., Gibbs A.; RT "Nucleotide sequence of the ononis yellow mosaic tymovirus genome"; RL Virology 172(2):555-563(1989). XX DR MD5; 71f74c9a3940631de495a90053d26549. DR EuropePMC; PMC112128; 10864632. DR RFAM; RF00233; Tymo_tRNA-like. XX FH Key Location/Qualifiers FH FT source 1..6211 FT /organism="Ononis yellow mosaic virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:12153" FT CDS 172..1965 FT /codon_start=1 FT /note="protein of unknown function (OP)" FT /db_xref="InterPro:IPR004935" FT /db_xref="UniProtKB/Swiss-Prot:P20130" FT /protein_id="AAA46795.1" FT /translation="MSNGLRTSFERISLFHPQGFISESSAEFCCSAPSNLSPKFPMDHW FT ERTSSFSPRCRHPDLRVRLQSSPPRGPQSDRNLPSLQPLELHGDRPGLCDVHETLQVQK FT IGLRQSKLLRTSKLPSHRGRFRSIPLHLHLSSEVRNRFHARCPDVLQPLSDTRPLHSVP FT LSSEAPLQSSCSPRKLLHRPLSPPKPLHLHNFRQHSSLCSRRSPCRKLRPTPRCNQLAQ FT AQQHPLPSSKPLSLQAGILGPCPLPPHNKRSPSPAVIRKTAGILPHPKLPPSSRGHLPS FT STSSSSPRSNRGVRCSVHLHKSRSNSQDLRSCRVRSNSLQQTPILMGHFKSLGQSPNLR FT SFERPRPTRRSLRLLPLSPQKVPTVHVPTHQQSGHKGPSLPRPHSPSRQTHHARLPHSK FT RVSLPNSVLHHDRPKRPIHFGSFPINVAPSHLLPRKLWSRASSPPTCSPTTSNHGHPEE FT ALRFLPKNLPQHCQMALMENYCSHFSSPSSSVSFPEDHQSSLPPISTRWVQCSSPSFSL FT QSFLVIGDIPCPISFPLSSPQSHSSESLRGDSPPSSHLPSSPSSACSGDSFASCSSFGP FT SNPTSSASALGGNHFNFSFFS" FT CDS 179..5509 FT /codon_start=1 FT /note="replicase protein (RP)" FT /db_xref="GOA:P20127" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:P20127" FT /protein_id="AAA46796.1" FT /translation="MAFELALNALASSTHKDSSLNPVLNSAVQPLQTSLQNFPWIIGKE FT HLPFLLAAGIPTSGFGCNPHPHAVHKVIETFLLFNHWSFMATVQASVMFMKPSKFKKLA FT SVNPNFSELVNYRLTAADSVRYPSTSTSLPKYEIVFMHDALMYFNPSQILDLFIQCPSL FT QRLHCSLVVPPESSFTDLSLHPNLYTYTISGNTLHYVPEGHHAGSYDQPLDAISWLKLN FT SIHSPHLNLSVSKLESWGPVHSLLITRGLPHLPSSEKQQVSFHIPNCLPLPEATFLHQP FT LRHRLVPTEVYDALFTYTRAVRTLRTSDPAGFVRTHSNKPQYSWVTSRAWDNLQTYALL FT NAPVRPVVLFDFFLSPLKKFQLFMSQHINSLVIKALPFLGLIPPLVKLTTLGFPIPSVS FT HFQILFFTMIGPSGQFILEAFPSMLHPAISYLESCGLVPRLPPPVAQQLQTMGILRKRS FT AFSLKTSLSTVKWPSWKITALISALPAALSVFLKTISPLSLQSLHDGYNAHLHPSPFNL FT SWSLETFHVQSPSPFLPLSLTPPSPSEEIALPPPIFRVPPPLPAQETPSPPAPALVPPT FT QPPQPQPWEEIISTFLSSLNASSHKPSPSSAPLESPSPIPESFEVLAEAPQHQRSINEC FT GALNQLPLPVPSPLQNSTNPKPPFPSSDLLSDMSCTGPVVEFETIFPAEYHMSNGSFPT FT RLRGHPRSSAPFPQKHCLLTAVASQLSYTEHQLWEFLCDMLPDSLLTNSEVENFGLSTD FT HLTCLSYRLHFECIIHTSHSTIPYGIKKASTVIQISYIDGPPKHFKAFIKLAAAAPGSN FT PSKSNLVRAALRFKYNDAFLPFWDAHQHTISVPHAKNLISNMKNGFDGITSQLSGPSNK FT SPKMKLLELDATIDVSFPRKCDVIHIAGFPGCGKSHPIQKLLQTPAFRHFRLSVPTNEL FT RSEWKRDLNLPESEVWRLCTWETALFKSSNILVVDEIYKLPRGYLDLILLADPSIQLVI FT MLGDPLQGEYHSSHPSSSNSRLESETTRLSKYIDCYCWWTYRCPKAVADLFGVKTFNSN FT EGFIRAVLSHPPNLPNLVNSIATANTMQSLGHHALTISSSQGMTYSDPVTVLLDRHSLL FT ITPQTALVALTRSRSGIYFIGSMYTASGSAGTSYMFSCALTGLPVDMMSAFPLFHTLPL FT IHEPIRSRRHRLVAGHTPSLHVPPSNKWPHRLHLPPHIPTSHSKDVILAHGIVASNAPE FT RRLTTLHLPPTRLPLHFDLESCNPSTVSTSSTSNSEVPFTHAFLGESFEELAAHFLPAH FT DPDLKEVTVGDQTSQQFPYLDQPYTLSCQPSSLLAASHKPASDPTLLIFSISKRLRFRA FT SSSPYAFTPNDLILGHLLYTNWCKAFGRCPNSTIPFNPALFAECICLNEYAQLSSKTQA FT TIVSNASRSDPDWRYTVVRIFAKSQHKVNDGSIFGSWKACQTLALMHDFVILTLGPVKK FT YQRIIDHYDRPNFIYTHCGKTPSELSAWSHSFLKGDAYICNDYTSFDQSQHGEAVIFES FT LKMHRVGIPRHLIDLHIYLKTNVSTQFGPLTCMRLTGEPGTYDDNTDYNLAVIFSQYVI FT SDHPIMVSGDDSVICGHPPINPNWPAVEKLLHLRFKTEETSLPLFCGYYVGPTGCCRNP FT FALFAKLMISYDKGNLFETLPSYLYEFSIGHRLGDVVRLLFPDHLLKYYSACWDLFCRK FT CTASQKLILSFEPIPPSFFSKLASTSRWVSKVLFSDLPTKIRDMLISSSKLPSYHQDPR FT VQYLESELLTSFNHGRLSTN" FT CDS 5487..6065 FT /codon_start=1 FT /note="virion protein (VP)" FT /db_xref="GOA:P20124" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:P20124" FT /protein_id="AAA46797.1" FT /translation="MEDSQPIKVRQPSISAPGTHLSPNPGQQSPSMVVPFQVSVSDLGV FT SEVSAQITLSSDPTLAQLTSIYRMASIVECEAVLFPNSTSSKNPVHCDLIWVPSNSSAS FT PKTILQTYGGNRFTVGGPITSNQIISFPLRLDSVNPIIKDSVLYLDSPRLLAFSPAPPE FT TQSIPSASLLIRGKLRLSSILVQPLLTSS" XX SQ Sequence 6211 BP; 1330 A; 2160 C; 973 G; 1748 T; 0 other; gtaatttttt gccagttcaa ccctttcgag ccttgaactt tacctttacc ttttcttttt 60 cttcctttga cttcgctctc cggcccgaag ttttccttga acactccctc ctagagccag 120 tgttcttttt tttcccttct ttaattcaca ccctttcgag cctgtgaatt catgtctaat 180 ggccttcgaa ctagctttga acgcattagc ctcttccacc cacaaggatt catctctgaa 240 tccagtgctg aattctgctg ttcagcccct tcaaacctct ctccaaaatt tcccatggat 300 cattgggaaa gaacatcttc cttttctcct cgctgcaggc atcccgacct ccgggttcgg 360 ctgcaatcct cacccccacg cggtccacaa agtgatcgaa accttccttc tcttcaacca 420 ctggagcttc atggcgaccg tccaggcctc tgtgatgttc atgaaaccct ccaagttcaa 480 aaaattggcc tccgtcaatc caaacttctc cgaactagta aactaccgtc tcaccgcggc 540 agattccgtt cgatacccct ccacctccac ctctcttccg aagtacgaaa tcgttttcat 600 gcacgatgcc ctgatgtact tcaacccctc tcagatacta gacctcttca ttcagtgccc 660 ctctcttcag aggctccact gcagtctagt tgttccccca gaaagctcct tcaccgacct 720 ctctctccac ccaaacctct acacctacac aatttccggc aacactcttc attatgttcc 780 agaaggtcac catgccggaa gttacgacca acccctcgat gcaatcagtt ggctcaagct 840 caacagcatc cactcccctc atctaaacct ctcagtctcc aagctggaat cttggggccc 900 tgtccactcc ctcctcataa caagaggtct ccctcacctg ccgtcatccg aaaaacagca 960 ggtatccttc cacatcccaa actgcctccc tcttcccgag gccaccttcc ttcatcaacc 1020 tcttcgtcat cgcctcgttc caaccgaggt gtacgatgct ctgttcacct acacaagagc 1080 cgttcgaact ctcaggacct cagatcctgc cgggttcgtt cgaactcact ccaacaaacc 1140 ccaatactca tgggtcactt caagagcttg ggacaatctc caaacctacg ctcttttgaa 1200 cgcccccgtc cgacccgtcg ttctcttcga cttcttcctc tctcccctca aaaagttcca 1260 actgttcatg tcccaacaca tcaacagtct ggtcataaag gcccttccct tcctcggcct 1320 cattccccct ctcgtcaaac tcaccacgct cggcttcccc attccaagcg tgtctcactt 1380 ccaaattctg ttcttcacca tgatcggccc aagcggccaa ttcattttgg aagctttccc 1440 atcaatgttg cacccagcca tctcttacct cgaaagttgt ggtctcgtgc ctcgtctccc 1500 cccacctgta gcccaacaac ttcaaaccat gggcatcctg aggaagcgct ccgctttctc 1560 cctaaaaacc tccctcagca ctgtcaaatg gccctcatgg aaaattactg ctctcatttc 1620 agctctccca gcagctctgt cagttttcct gaagaccatc agtcctctct ccctccaatc 1680 tctacacgat gggtacaatg ctcatctcca tccttctccc ttcaatcttt cctggtcatt 1740 ggagacattc catgtccaat ctccttcccc ctttcttccc ctcagtctca ctcctccgag 1800 tccctcagag gagatagccc tccctcctcc catcttccga gttccccctc ctctgcctgc 1860 tcaggagact ccttcgcctc ctgctccagc tttggtccct ccaacccaac ctcctcagcc 1920 tcagccttgg gaggaaatca tttcaacttt tctttcttct cttaatgctt cctcacacaa 1980 gccctctcct tcctccgccc ctctcgaatc accttctccg atccccgagt cgttcgaagt 2040 cctggctgaa gctcctcaac atcaaagatc tatcaacgaa tgtggagctc taaaccaact 2100 tcctcttcct gttccatccc ccctccagaa ctccactaat ccaaaacctc cctttccctc 2160 ttcagatctg ctatctgaca tgtcttgcac aggtccggta gttgaatttg aaaccatctt 2220 cccagctgag taccacatgt ccaatggcag ttttccaact cgcctccgag gtcatcccag 2280 gtcctcagcc cccttccccc aaaaacactg ccttctcaca gctgttgctt cccaactctc 2340 atacactgaa caccaacttt gggaatttct ttgcgacatg ctccctgact cccttctaac 2400 caattccgaa gttgaaaact ttggcttgag caccgatcat ttgacctgct taagctatcg 2460 tcttcacttc gaatgcatca ttcacacctc acattccaca atcccctatg gcatcaagaa 2520 agcttccaca gtcatccaga tttcctacat cgatggcccc cccaaacact ttaaagcttt 2580 catcaaactt gctgccgccg ctcctggctc caacccctcc aaatccaatc ttgttcgagc 2640 cgcccttcgt ttcaagtaca atgatgcttt ccttcctttc tgggatgctc atcaacacac 2700 catttctgtt ccccatgcta aaaaccttat ttcgaacatg aaaaacggtt ttgatggcat 2760 cacctcccaa ctttctggcc cttctaacaa gtcccccaag atgaaactct tggaacttga 2820 tgccaccatc gacgtctcct tccctcgcaa atgcgatgtt atccacattg ctggcttccc 2880 cggctgtgga aaatcccatc caatccaaaa gctgctccaa actcccgcct tccgccactt 2940 tcgtctctcc gtcccaacta atgaacttcg gtcagaatgg aagcgtgatc tgaaccttcc 3000 agagtccgaa gtttggcgcc tctgcacttg ggagactgct ctcttcaaat catccaacat 3060 tctcgttgtt gatgaaattt acaaactccc tcgtggctac ctcgacctca tcctccttgc 3120 tgacccttcc atccagcttg tcatcatgct tggtgatccc cttcaaggag agtaccattc 3180 ctcacaccct tcctcctcca acagccggct tgagtccgaa acaactagac tctccaaata 3240 catcgactgc tactgctggt ggacctatcg ttgtcctaaa gcagttgccg atttatttgg 3300 cgtgaaaacc ttcaattcca acgaaggatt catccgcgct gttctctctc atccccccaa 3360 ccttccaaac ttggtgaaca gcatagcaac tgctaacacc atgcagagct taggccacca 3420 cgccctcacc atttccagct ctcaaggcat gacctactct gaccccgtca ctgtccttct 3480 tgaccgccac tcccttctta tcactccaca aactgcactc gttgctctca ctcggtccag 3540 gtccggcatc tactttattg gtagcatgta cacggcttct ggctccgctg ggacctctta 3600 catgttctct tgtgccctca cgggtcttcc tgttgacatg atgagtgctt tccctctctt 3660 ccacactctc cctctcatcc acgaaccaat ccgctcccgc cgccaccgcc tcgtcgcagg 3720 tcacacccca tctctccatg tgcccccttc caacaagtgg cctcaccgtc tccaccttcc 3780 ccctcacatt ccaacttctc attccaaaga tgtgatcctg gctcacggaa tcgttgcttc 3840 caacgcccct gagcgaagac tgaccactct tcacctccct ccaactcgcc ttcccctgca 3900 cttcgatctc gaaagctgca atccctcaac tgtgtccact tcttccactt ccaactctga 3960 agtacctttc acccatgctt tcctgggtga gagttttgaa gaactggccg ctcacttcct 4020 ccctgctcac gatccggatt tgaaagaagt tactgttggt gatcaaacca gtcagcaatt 4080 tccttatttg gatcaaccct acaccctctc ttgtcagcct tcttctcttc tcgccgccag 4140 ccacaagcct gcttctgacc ccactcttct cattttttcc atctccaaga gactccggtt 4200 cagagcctct tcttcaccct atgctttcac ccccaacgac ctcatcctcg gccaccttct 4260 ttacaccaac tggtgcaagg cctttgggcg ttgtcccaat tccaccattc ctttcaaccc 4320 tgcacttttt gccgaatgca tttgcctcaa tgagtacgcc caactttctt ccaaaactca 4380 agctaccatt gtctccaatg cctccaggtc tgatccagac tggagataca ccgtcgtccg 4440 catattcgct aagtcccaac ataaagtgaa cgacggtagt atatttggtt cttggaaagc 4500 atgccagact ctagctctga tgcatgattt cgtcatcctc actcttgggc ctgtcaaaaa 4560 ataccaaaga atcatagatc attatgacag acccaacttc atctacaccc actgtggaaa 4620 gactccttca gaactcagtg cttggagcca ttctttcctc aaaggcgatg cttacatctg 4680 caatgactac acttcatttg atcaaagtca gcacggggaa gccgtgatct ttgaatcttt 4740 gaaaatgcat cgcgtgggta ttcctcgtca tctcattgac ctccacatct atctcaaaac 4800 caacgtctcc actcagttcg gtcccctcac ttgcatgcgc ttaactggcg aaccagggac 4860 ctatgatgac aatactgact acaaccttgc agtcatcttt tctcagtatg tcatttctga 4920 tcacccaatc atggtttctg gtgatgactc cgtgatttgc ggccaccccc ccatcaatcc 4980 aaattggcca gctgttgaaa aacttctcca tctccgcttc aagactgagg aaacctctct 5040 tcctctgttt tgcggttact acgttggccc aaccggctgc tgccgcaacc cctttgccct 5100 tttcgccaaa ttgatgatat cgtacgacaa gggcaatctc ttcgaaaccc tcccctcata 5160 cctctatgag ttttcaattg gccacagact tggcgacgtg gttcgcttgc tcttccctga 5220 tcatctcctc aagtactact cggcttgctg ggatttgttc tgcagaaagt gcactgcctc 5280 tcaaaaactc attctttcct tcgagcccat ccccccttct ttcttctcta aattggcctc 5340 cacatctcgc tgggtcagca aagttctttt ctctgatctt cctaccaaga ttcgagacat 5400 gctcatctct tcctccaagc tccccagcta ccatcaggac cctcgcgtcc agtacctaga 5460 gtctgaattg cttacctctt tcaatcatgg aagactctca accaattaaa gtgcgccaac 5520 cctccatctc tgctcctggg actcatctgt ctccaaaccc aggacaacaa tcccctagca 5580 tggtcgttcc tttccaagtt tctgtttcag accttggtgt ttctgaggtc tctgctcaga 5640 tcaccctttc ctccgatcca acccttgctc aactcacttc catttatcgc atggcctcca 5700 tcgttgaatg cgaagcggtt ctctttccta actccacctc ttctaagaat cccgttcact 5760 gcgatcttat ttgggtccct tcaaactctt ccgcttcacc caaaaccatc cttcaaacct 5820 atggcggcaa ccgatttaca gtcggcggtc ccataacttc caaccaaatc atttcttttc 5880 ctctccgtct tgattctgtc aatcccatca tcaaagatag cgtcctgtac cttgattctc 5940 caaggcttct cgctttctct cctgctcccc ctgagactca atccattcca tctgcttctc 6000 tcctcattcg cggaaagctt cgactttcct ccatccttgt tcagcccctc ctaacatctt 6060 cctgagctcg atccagcttc ataggatccg tccgtagttc ggggattggt tgccctaagc 6120 aacccgctta aatatgaccg gtgtcatagc ctctagcaca cagaggtcgc gtgggttcaa 6180 ctccccccct tttccgaggg tatcggaaac c 6211 //