ID J04373; SV 1; linear; genomic RNA; STD; VRL; 6319 BP. XX AC J04373; XX DT 26-MAY-1990 (Rel. 24, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Turnip yellow mosaic virus Club Lake isolate, complete genome. XX KW complete genome; nucleotide binding protein; replicase; virion protein. XX OS Turnip yellow mosaic virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Tymovirus. XX RN [1] RP 1-6319 RX DOI; 10.1016/0042-6822(89)90196-7. RX PUBMED; 2800335. RA Keese P., Mackenzie A., Gibbs A.; RT "Nucleotide sequence of the genome of an Australian isolate of turnip RT yellow mosaic tymovirus"; RL Virology 172(2):536-546(1989). XX DR MD5; 40718c6dec4698ab3626efdec835c387. DR EuropePMC; PMC112128; 10864632. DR RFAM; RF00233; Tymo_tRNA-like. DR RFAM; RF00390; UPSK. XX CC Draft entry and computer-readable sequence for [1] kindly submitted CC by A.Gibbs, 04-AUG-1989. XX FH Key Location/Qualifiers FH FT source 1..6319 FT /organism="Turnip yellow mosaic virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:12154" FT CDS 89..1975 FT /codon_start=1 FT /note="Unknown protein" FT /db_xref="InterPro:IPR004935" FT /db_xref="UniProtKB/Swiss-Prot:P20131" FT /protein_id="AAA46591.1" FT /translation="MSNGLPISIGRPCTHDSQRSLSASDSRIHSRFDSLLDTDLPMVHS FT EGTSAPTQLLRHPNIWFGNIPPPPRRPQDNRDFSPLHPLVFPGHHSQLRHVHETQQVQQ FT TCPGELKLSGIEELPPAPQRQHSLPLHITRPSRFPHHFHARRPDVLPSLPDHGPVLAET FT KPRTSVRQPRSTTRGPSFRPILLPEVVHVHDDPPHSSLRPGRSRSRQLQPTIRRPLLAP FT NQFNSPRQPPPLSDDPGILGPCPLAPNSTRDPPPRPITPGPFNTHGVRPLSVLPRAPPR FT RGLLPNPRRHRTSTGHIPSTTASRPTGPPSRLQRPVHLHQSGPHTPDFRPSGIRKDAFL FT QTGPRLGHLERLGQSADLRTSERTPSTKRRLPRPSEPNCLPSSLPEATLAPSYRHRRSH FT PLLPNPPAALPPIAYTSGRGKIHHSLPKGALPKEGPPPPPRRLPSPATPPQSPLRDLGR FT TPSFPTPPKTSTRAPESCIAAPPTDIAPLDSDPVLSVRTEVHAPERRTFMDPEALRAAL FT AGLPSPPLSVGIIRTASQTVLPTNSPSPTRHLPPTSSPWILQSPVGEDAIVDSEDDSIS FT SFHSHDFNSPSGPLRSQSPSRFRLHLRSPSTSSGIEPWSPASYDYGSAPDTD" FT CDS 96..5630 FT /codon_start=1 FT /note="replicase polyprotein" FT /db_xref="GOA:P20128" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/Swiss-Prot:P20128" FT /protein_id="AAA46592.1" FT /translation="MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKE FT LLPLLNSYGIPTSGLGTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFNKLA FT QVNSNFRELKNYRLHPNDSTRYPFTSPDLPVFPTIFMHDALMYYHPSQIMDLFLQKPNL FT ERLYASLVVPPEAHLSDQSFFPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRIN FT SIRLGNHHLSVTILESWGPVHSLLIQRGTPPPDPSLQAPSTPMASDLFRSYQEPRLDVV FT SFRIPDAIELPQATFLQQPLRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKP FT DHDWVTSNAWDNLQTFALLNVPLRPNVVYHVLQSPIASLALYLRQHWRRLTATAVPILS FT FLTLLQRFLPLPIPLAEVKSITAFRRELYRKKAPHHPLDVFHLQQHLRNHHSAISAVRP FT ASPPHQRLPHALQKAALLLLRPISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQA FT SLVLLSLSESSVLLHKLFSPPTLQAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPF FT TPTTSTAPPDHSEASLPPAFASTSVPRPPPVASSLGAQPPTTTAAPPTPIEPTQRAHQN FT SDLTLESSTPIEPPPPPIQSSDIPPSAPVLFPEINSPHRFSPKLPTTPDFEPTRTSPPP FT STSHQDSTDPADPLMGSHLLHHSLPAPPTHPLQSSQLLPAPLTNDPTAIGPVLPFEELH FT PRRYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEDHLWESLQTILPDSQL FT RNEEINSLGLSTEHLTALAHLYNFQATIYSDRGPILFGPSDTIKRIDITHTTGPPSHFS FT PGKRLLGSQPSAKGHPSDSLIRAMKSFKVSGNYLPFSEAHNHPTSISHAKNLVSNMKNG FT FDGILSLLDVSTGQRTGPTPKDAIIQIDHYLDTNPGKTTPVVHFAGFAGCGKTYPIQQL FT LKTKLFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMP FT RGYLDLSILADPALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSY FT RIPQCIARLFQIHSFNAWQGIIGSVSTPQDQSPVLTNSHASSLTFNSLGYRSCTISSSQ FT GLTFCDPAIIVLDNYTKWLSSANGLVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDAFN FT NSLIIMDRYFPSLFPQLKLITSPLTTRSPKLNGATPSASPTHRSPNFHLPPHIPLSYDR FT DFVTVNPTLPDQGPETRLDTHFLPPSRLPLHFDLPPAITPPPISTSVDPPQAKASPVYP FT GEFFDSLAAFFLPAHDPSTREVLHKDQSSNQFPWFDRPFSLSCQPSSLISAKHAPNHDP FT TLLPASINKRLRFRPSEAPHQITADDVVLGLQLFHSLCRAYSRQPNITVPFNPELFAEC FT ISLNEYAQLSSKTQSTIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLA FT LMHDYVILVLGPVKKYQRIFDNVDRPSHIYSHCGKTPNQLRDWCQEHLTHSTPKIANDY FT TAFDQSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYD FT DNTDYNLAVIYSQYDVGSCPIMVSGDDSLIDHPLPTRHDWPSVLKRLHLRFKLELTSHP FT LFCGYYVGPAGCIRNPLALFCKLMIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPE FT THVQYQSACFDFFCRRCPKHEKMLLDDSTPTLSLLERITSSPRWLTKNAMYLLPAKLRL FT AITSLSQTQSFPESIEVSHAESELLHYVQ" FT CDS 5645..6214 FT /codon_start=1 FT /note="virion protein" FT /db_xref="GOA:P20125" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="PDB:2FZ1" FT /db_xref="PDB:2FZ2" FT /db_xref="UniProtKB/Swiss-Prot:P20125" FT /protein_id="AAA46593.1" FT /translation="MEIDKELAPQDRTVTVATVLPTVPGPSPFTIKQPFQSEVLFAGTK FT DAEASLTIANIDSVSTLTTFYRHASLESLWVTIHPTLQAPAFPTTVGVCWVPANSPVTP FT TQITKTYGGQIFCIGGAINTLSPLIVKCPLEMMNPRVKDSIQYLDSPKLLISITAQPTA FT PPASTCIITVSGTLSMHSPLITDTST" XX SQ Sequence 6319 BP; 1461 A; 2426 C; 1061 G; 1371 T; 0 other; gtaatcaact accaattcca gctctctttt gacaactggt cttataccaa ctttccgtac 60 acttgcaacc ctcgtaagac aattgcaaat gagtaatggc cttccaatta gcattggacg 120 cccttgcacc cacgactcac agagatccct ctctgcatcc gattctcgaa tccacagtag 180 attcgattcg ctcctcgata cagacctacc catggtccat tccgaaggaa cttctgcccc 240 tactcaactc ctacggcatc ccaacatctg gtttgggaac atcccaccac ccccacgccg 300 cccacaagac aatcgagact tttctccttt gcacccactg gtctttccag gccaccactc 360 ccagctccgt catgttcatg aaacccagca agttcaacaa acttgcccag gtgaactcaa 420 actttcggga attgaagaac taccgcctgc accccaacga cagcactcgt taccccttca 480 catcaccaga ccttcccgtt ttccccacca ttttcatgca cgacgccctg atgtactacc 540 atccctccca gatcatggac ctgttcttgc agaaaccaaa cctcgaacgt ctgtacgcca 600 gcctcgtagt accacccgag gcccatcttt ccgaccaatc cttcttcccg aagttgtaca 660 cgtacacgac gacccgccac actcttcact acgtcccgga aggtcacgaa gccggcagct 720 acaaccaacc atccgacgcc cactcttggc tccgaatcaa ttcaattcgc ctcggcaacc 780 accacctctc agtgacgatc ctggaatcct ggggccctgt ccactcgctc ctaattcaac 840 gagggacccc cccccccgac ccatcactcc aggccccttc aacacccatg gcgtccgacc 900 tctttcggtc ttaccaagag ccccgcctcg acgtggtctc cttccgaatc ccagacgcca 960 tcgaacttcc acaggccaca ttccttcaac aaccgcttcg agaccgactg gtcccccgag 1020 ccgtctacaa cgccctgttc acctacacca gagcggtccg cacactccgg acttcagacc 1080 cagcggcatt cgtaaggatg cattcctcca aaccggacca cgattgggtc acctcgaacg 1140 cctgggacaa tctgcagacc ttcgcacttc tgaacgtacc ccttcgacca aacgtcgtct 1200 accacgtcct tcagagccca attgcctccc tagctcttta cctgaggcaa cattggcgcc 1260 gtcttaccgc caccgccgtt cccatcctct ccttcctaac cctcctgcag cgcttcctcc 1320 cattgcctat acctctggca gaggtaaaat ccatcacagc cttccgaagg gagctctacc 1380 gaaagaaggc cccccaccac cccctcgacg tcttccatct ccagcaacac ctccgcaatc 1440 accactccgc gatctcggcc gtacgcccag cttccccacc ccaccaaaga cttccacacg 1500 cgctccagaa agctgcattg ctgctcctcc gaccgatatc gcccctcttg acagcgaccc 1560 cgttctttcg gtccgaacag aagtccatgc tcccgaacgc cgaactttca tggaccctga 1620 agcgcttcgc gctgccttgg caggcctccc tagtcctcct ctctctgtcg gaatcatccg 1680 tactgcttca caaactgttc tccccaccaa ctctccaagc ccaacacgac acctaccacc 1740 gacatcttca ccctggatcc tacagtctcc agtgggagag gacgccattg tcgattccga 1800 ggacgacagc atttcttcct ttcactccca cgacttcaac agcccctccg gaccactccg 1860 aagccagtct ccctcccgct ttcgcctcca cctccgttcc ccgtccacct ccagtggcat 1920 cgagccttgg agcccagcct cctacgacta cggcagcgcc cccgacaccg attgaaccca 1980 cccagcgcgc tcatcaaaat tctgacctca cgcttgaaag ttcaacccca attgaacccc 2040 ccccaccccc catccaatcc tccgacatcc cgccttccgc ccccgttctt ttcccagaaa 2100 tcaactcacc gcatcgtttt tcccccaaac ttcccaccac acccgatttc gaacccaccc 2160 gcacttcacc ccctccttcc acttcgcatc aagattcgac tgaccccgcg gaccccctga 2220 tgggctccca ccttctgcac cattcactac ctgcacctcc cacccacccg cttcaatctt 2280 cacagctctt gcccgcacct ttgacaaacg accccaccgc gatcggcccg gtactcccct 2340 ttgaagaact ccacccacgc aggtaccccg aaaacaccgc cactttcctc acgaggctcc 2400 gttcacttcc ttcaaaccat ctaccacaac ccaccctgaa ttgtctcctc tctgctgtct 2460 ccgaccaaac caaggtttcc gaggatcacc tctgggagtc cctacagaca attctcccag 2520 acagccaact caggaacgaa gagatcaact ctctcgggct ttcaactgaa cacctcactg 2580 cgttggccca tctttacaac ttccaggcaa ccatctactc cgatcgtggt cccatcctct 2640 tcggcccatc cgacaccatt aagagaatcg acatcaccca caccaccgga ccgccatccc 2700 acttttcacc cggcaaaaga cttttaggca gccaaccctc agctaagggc catccctccg 2760 actcactcat cagagccatg aagtctttca aagtatccgg caactacctt cccttctctg 2820 aggcccacaa ccatcccacc tccatctcac atgccaagaa cttggtttca aacatgaaga 2880 atggattcga cggcatcctc tcccttctcg acgtctccac aggccaacga accggaccca 2940 cccccaaaga cgcgatcatt cagatagacc actacctcga caccaacccc ggcaaaacca 3000 cccctgtggt gcattttgct ggtttcgctg gctgtggaaa gacatatccg atccaacagc 3060 tccttaaaac taaactgttc aaagactttc gggtctcctg ccccaccaca gaactcagaa 3120 ccgaatggaa gactgcgatg gaacttcatg gctcccagtc atggcgcttt aacacttggg 3180 agtcttccat tctcaagtca tccagaattc tggtcatcga tgaaatctac aaaatgccaa 3240 gagggtacct cgacctttcc attctcgctg accccgccct cgaactcgtc ataattctcg 3300 gtgatcctct ccagggcgag taccactctc aatccaaaga ctcatccaat caccgccttc 3360 cctccgaaac tctcaggctg ctaccataca ttgacatgta ctgctggtgg agttatcgca 3420 ttccccaatg tatcgcccga ctcttccaaa ttcacagctt caatgcctgg cagggaatca 3480 tcggctccgt ttcaactccc caggatcaat cccccgttct caccaacagt catgcctcat 3540 ctctcacctt caacagcctg ggatatcgct cctgcacgat cagctctagc caaggcctca 3600 cattctgcga ccctgccatc atcgtcctgg acaactacac caagtggctc tcctcggcca 3660 acggcctcgt cgccctcacc cgatccagat caggtgtcca attcatgggc ccctcttcct 3720 atgtcggggg aaccaacggc tcttctgcca tgttttctga cgccttcaac aacagcctca 3780 tcatcatgga tcgctacttc ccatccctgt tcccacaact caagctcatc acctcccccc 3840 tcacaactcg cagccccaaa ctcaacgggg ccacccccag cgcatctccc acccatcgct 3900 cgccaaactt ccacctcccc ccacacattc ccctctctta tgatcgtgat ttcgtcacgg 3960 tcaacccaac tctccctgat cagggacccg aaacaagact cgacacccac ttcctcccac 4020 cttctcggct cccgcttcat ttcgatctcc caccagctat cacccccccc ccgatttcca 4080 caagcgtcga cccgccacaa gctaaagcta gccccgtcta tccaggcgag ttcttcgatt 4140 ctctggcggc gttcttctta ccagcacacg acccatcaac aagggaagta ctccacaaag 4200 atcaatctag caaccagttc ccttggttcg accgaccctt cagcttgtcc tgccagccct 4260 caagtttaat ttctgccaag catgcaccca accacgatcc gacccttctg cctgcctcca 4320 tcaataaacg cttgcgattc agacccagtg aagcaccgca ccaaatcacc gcagacgacg 4380 tggtcctagg cctgcaactc ttccactctc tctgccgcgc ctactcacgt caacccaaca 4440 tcaccgttcc attcaaccct gaacttttcg cagaatgtat ctctctgaat gaatacgcgc 4500 agctcagttc caaaacccaa tccaccatag tggccaacgc ttcacgctcc gacccagact 4560 ggcgacacac caccgtcaag atttttgcga aagctcaaca caaagtcaac gacggctcca 4620 tcttcggttc atggaaggcc tgccaaactc tcgcactcat gcatgattac gtaattctgg 4680 ttcttggacc cgtcaagaaa tatcaaagaa tcttcgacaa cgttgatcgg ccatctcaca 4740 tctactcaca ctgcggcaag acacccaacc aacttcgaga ttggtgccag gaacatctca 4800 ctcattccac cccaaaaatc gcaaacgact acaccgcctt cgaccaatcc cagcatggag 4860 aatccgtggt tcttgaagcc ctcaaaatga agagactgaa cattccgagc catttgattc 4920 agctccatgt ccacctcaag accaacgtct ccacccagtt cggccccctc acatgcatgc 4980 gcctgaccgg ggaacccgga acctacgacg acaacactga ctacaacctc gcagtcatct 5040 actctcagta tgacgttggt tcctgcccca tcatggtctc tggcgacgac tcactcatag 5100 accaccctct tcccactcgc cacgactggc cctctgttct caaacgcctc cacctccgct 5160 ttaaacttga actcacttct catcccctct tttgtggcta ctacgtcggt ccagcaggct 5220 gcatccgcaa ccccttggcc cttttctgca agctcatgat cgcagtggac gatgacgccc 5280 tcgacgaccg acgactcagc tacctcaccg agttcaccac cggacacctc cttggcgaat 5340 cactatggca cctcctccct gaaacccacg tccagtatca gtcagcttgc tttgacttct 5400 tctgcagacg ttgcccaaaa cacgagaaga tgctcctcga tgattccaca cccacactca 5460 gcctcctcga acgaatcact tcttcaccga ggtggctcac caagaacgcc atgtacctcc 5520 tccccgccaa gctcagactg gctatcacct ctctgtctca aacgcaatct ttcccagaat 5580 ccattgaggt ttcccacgct gagtctgaat tgcttcacta tgtccaatag caatcagccc 5640 cgacatggaa atcgacaaag aactcgcccc ccaagaccgc accgtcaccg tcgccaccgt 5700 tttaccgact gtccccggcc cctcaccttt caccatcaaa caaccgttcc agtctgaagt 5760 tctgtttgct gggaccaaag atgccgaggc ctctctcacc atcgccaaca tcgacagcgt 5820 ttccaccctc accaccttct atcgtcatgc ctctctggaa tcactctggg tcaccatcca 5880 tcctaccttg caagccccag ctttcccgac cacggttggc gtttgctggg tacccgccaa 5940 ctccccagtc actcccaccc aaatcaccaa gacctacggc ggccagatct tctgcattgg 6000 aggcgccatc aacactctct cacccctcat tgtcaagtgc ccacttgaaa tgatgaaccc 6060 ccgggtcaaa gattcaattc aataccttga ctcgcccaaa ctcctcatct ccatcaccgc 6120 tcaacccacc gctccccccg catcgacctg cataataact gtatcaggaa ctctctcgat 6180 gcattctccg ctcatcacgg acacttccac ctaagttctc gatctttaaa atcgttagct 6240 cgccagttag cgaggtctgt ccccacacga cagataatcg ggtgcaactc ccgccccttt 6300 tccgagggtc atcggaacc 6319 //