ID J04342; SV 1; linear; genomic RNA; STD; VRL; 3768 BP. XX AC J04342; XX DT 23-NOV-1989 (Rel. 21, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 2) XX DE Barley stripe mosaic virus alpha RNA, complete cds. XX KW . XX OS Barley stripe mosaic virus OC Viruses; Riboviria; Virgaviridae; Hordeivirus. XX RN [1] RP 1-3768 RX DOI; 10.1016/0042-6822(89)90427-3. RX PUBMED; 2728343. RA Gustafson G.D., Armour S.L., Gamboa G.C., Burgett S.G., Shepherd J.W.; RT "Nucleotide sequence of barley stripe mosaic virus RNA alpha: RNA alpha RT encodes a single polypeptide with homology to corresponding proteins from RT other viruses"; RL Virology 170(2):370-377(1989). XX DR MD5; ab73010170401fc592562d2c597c7a73. DR EuropePMC; PMC3915304; 24499968. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01075; TLS-PK1. XX CC Draft entry and computer readable copy of sequence [1] kindly CC provided by Gustafson,G., 07-APR-1989. XX FH Key Location/Qualifiers FH FT source 1..3768 FT /organism="Barley stripe mosaic virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:12327" FT misc_RNA 1..3511 FT /note="alpha RNA" FT CDS 92..3511 FT /codon_start=1 FT /note="alpha protein" FT /db_xref="GOA:P17595" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/Swiss-Prot:P17595" FT /protein_id="AAA46336.1" FT /translation="MASDEIVRNLISREEVMGNLISTASSSVRSPLHDVLCSHVRTIVD FT SVDKKAVSRKHEDVRRNISSEELQMLINAYPEYAVSSSACESGTHSMAACFRFLETEYL FT LDMVPMKETFVYDIGGNWFSHMKFRADREIHCCCPILSMRDSERLETRMMAMQKYMRGS FT KDKPLRLLSRYQNILREQAARTTAFMAGEVNAGVLDGDVFCENTFQDCVRRVPEGFLKT FT AIAVHSIYDIKVEEFASALKRKGITQAYGCFLFPPAVLIGQKEGILPSVDGHYLVENGR FT IKFFFANDPNAGYSHDLKDYLKYVEKTYVDIEDGVFAIELMQMRGDTMFFKITDVTAAM FT YHMKYRGMKRDETFKCIPLLKNSSVVVPLFSWDNRSLKITSGLLPRTLVEQGAAFIMKN FT KEKDLNVAVLKNYLSAVNNSYIFNGSQVRDGVKIAPDLISKLAVTLYLREKVYRQRENS FT IISYFEQEMLHDPNLKAMFGDFLWFVPNTLSSVWKNMRKSLMEWFGYAEFDLTTFDICD FT PVLYVEIVDRYKIIQKGRIPLGEFFDCHEECENYELREKEKNDLAVKMAQKVTGTVTEC FT EKDLGPLVQPIKEILVQLVMPNLVRALCRPRSPTSPLDLKSIPGSTPSHSSSDSEHSMT FT EEASCTIAGSVPTWEIATRKDLTFQRIDEDMSRRTGMPPRPKVTSSYNMNARAEFLYYQ FT LCSVICERAQILSVIEDFRQNLIFSDKVAVPLNARFYSFQSLRPGWVFKTPSHSEVGHS FT YAVHFDFKTIGTDLEESLAFCRMVPISWDKSGKYIATTPHFPERHGYYVICDNTKLCNN FT WLIYNKLVDVYALVADRPLRFELIDGVPGCGKSTMILNSCDIRREVVVGEGRNATDDLR FT ERFKRKKNLNSKTANHRVRTLDSLLLAEGPCVPQADRFHFDEALKVHYGAIMFCADKLG FT ASEILAQGDRAQLPMICRVEGIELQFQSPDYTKTIINPKLRSYRIPGDVAFYLSAKEFY FT KVKGIPQKVITSNSVKRSLYARGETTPERFVSLLDVPVRKDTHYLTFLQAEKESLMSHL FT IPKGVKKESISTIHEAQGGTYENVILVRLQRTPNEIYPGGPRSAPYIVVGTSRHTKTFT FT YCSVTDDKLLLDIADVGGIAHTPIRTFESHIV" FT misc_feature 3532..3768 FT /note="3'-tRNA-like structure" XX SQ Sequence 3768 BP; 1093 A; 713 C; 891 G; 1071 T; 0 other; gtatgtaagt tgcctttggg tgtaaaattt cttgcatgca cataatcgta atcgattctt 60 cttgatctct aaacaacact ttcccgttag catggctagc gatgagattg tccgcaatct 120 gatctcccgt gaggaggtga tgggtaattt gattagcaca gcttctagct cagtaaggtc 180 acccttacat gacgtactgt gctcgcacgt aaggaccatc gtcgattccg tggataagaa 240 agcggtcagt cgcaagcatg aagatgtacg gcgcaacatc tcctctgagg aattgcagat 300 gttgataaat gcatatcctg aatatgccgt ttcatcctca gcttgtgaat ctggtactca 360 tagcatggcg gcttgttttc gatttctgga gacagaatat ctcttagata tggttccaat 420 gaaagagact tttgtttatg acattggtgg caactggttt tctcatatga agtttcgtgc 480 tgatagagaa attcattgtt gctgtccgat cttatctatg agagattctg aaagactgga 540 aacacgcatg atggcaatgc aaaaatatat gcgtggatcg aaagacaaac cgttacgctt 600 gttaagccgt tatcaaaata tcctgcgtga acaagcggcg agaacaactg cctttatggc 660 aggtgaggtg aatgcgggtg ttctcgatgg agatgtgttt tgtgagaaca cttttcaaga 720 ctgtgtgaga cgagtgcccg aaggtttttt gaagacagct atagcagttc atagcatcta 780 cgatatcaaa gtggaggaat ttgcgtctgc attgaaaaga aaaggtataa cacaggctta 840 tgggtgtttc ctgtttcctc ctgctgtatt gataggtcag aaggaaggca ttttaccttc 900 cgtggacggt cattacttgg tggagaatgg caggattaag ttcttctttg cgaatgatcc 960 gaatgccggt tactctcatg accttaagga ttatctgaag tatgtggaaa agacctatgt 1020 ggatatagag gatggagtgt ttgctattga gctgatgcaa atgcgaggtg ataccatgtt 1080 ctttaagatc acggatgtca ccgcagcaat gtatcatatg aaatacagag gtatgaaacg 1140 cgatgaaaca ttcaaatgca ttccgttgct aaagaattca tctgttgtcg tacctctatt 1200 ttcgtgggac aaccgttctt taaagatcac aagtggttta ctaccacgaa ctttggtcga 1260 gcagggtgcg gcttttatta tgaaaaacaa ggagaaggac ttgaacgttg ctgtgttgaa 1320 gaactatctt tccgctgtga acaactcata cattttcaac ggatcccagg ttagagatgg 1380 cgtgaaaatt gccccggatt taatctccaa gttggcagtg actctgtacc tgagagaaaa 1440 agtctatcga caaagagaaa attcaatcat aagttatttc gagcaagaaa tgcttcacga 1500 tcccaacttg aaagccatgt ttggagactt tctgtggttt gttccaaata ctctctcgag 1560 tgtctggaag aacatgcgaa aatcactgat ggaatggttt ggctacgcag aatttgactt 1620 gactactttt gatatttgcg atcccgttct ctatgtagag atagtggatc ggtataagat 1680 cattcaaaaa gggcgaattc cacttggtga gttctttgat tgtcatgaag aatgcgagaa 1740 ttacgaactg cgtgagaagg agaaaaacga cctagcggtg aaaatggccc agaaggtaac 1800 agggacggtg accgaatgcg agaaggacct gggacctctt gttcaaccga taaaagagat 1860 attggttcaa cttgtgatgc ccaatttggt cagagcgctg tgtagacctc gtagcccaac 1920 gtctcctttg gacttaaaaa gtatcccagg gtcaactcca tcacactcaa gttcagattc 1980 tgaacactct atgactgaag aagcgagctg caccattgcg ggtagcgtac caacatggga 2040 aattgcgact aggaaagatc taacctttca gcgaattgat gaagatatgt ctcgacgaac 2100 tggtatgcct ccaagaccaa aagtaacttc tagttacaac atgaatgcca gagctgagtt 2160 tctctactat caactgtgta gcgtgatttg tgaaagggct cagattttga gtgtcatcga 2220 agactttcgt cagaatttga tattctcaga taaagtggcc gttccattga acgctagatt 2280 ctacagtttt cagtcattga gacccggatg ggtgttcaaa actccatcgc atagtgaagt 2340 aggccacagt tatgcagtac attttgactt caagacaatt ggaaccgatt tggaagagag 2400 cctagctttt tgccgaatgg taccgatttc atgggataaa agcggcaaat acatcgcgac 2460 aactcctcat tttcccgaga gacatggtta ctacgtgatt tgtgacaaca ctaaattgtg 2520 taacaattgg cttatttaca ataagttagt tgacgtctac gcactagtgg ctgatagacc 2580 tctgagattc gagttgattg acggagttcc tggctgcgga aagtcaacca tgattttaaa 2640 cagctgtgat attcgacgcg aagttgttgt tggtgaagga cggaatgcaa ctgatgactt 2700 aagggagagg ttcaagcgta agaaaaattt gaatagtaag actgctaatc acagagttcg 2760 aacgcttgac agcttattac ttgctgaagg accttgtgta ccgcaagctg ataggtttca 2820 ttttgatgaa gctctaaaag ttcattacgg cgccataatg ttctgtgctg ataagcttgg 2880 tgcctcagaa attctcgctc agggagatag ggctcaattg ccaatgatct gtcgtgtaga 2940 aggtattgaa cttcaatttc aatctcctga ttacacgaag acgatcataa atcctaagct 3000 acggtcatac cgtatccctg gagatgttgc cttctatttg agtgctaagg aattttacaa 3060 agttaaagga atacctcaaa aggttataac ttctaacagt gtgaaacgtt ccttgtacgc 3120 tagaggcgaa acgactccgg aaagattcgt gagtttgctt gatgttccgg tgagaaaaga 3180 cacccactat ctaaccttct tacaagctga gaaggaaagt ttgatgagtc atttgattcc 3240 aaagggtgtg aagaaagagt ctatttcaac gattcatgag gcgcagggtg gtacctatga 3300 aaatgtgatt ctggtccgtt tgcaacggac gcccaatgaa atttatccgg gtggacctag 3360 gtccgcccct tacattgtgg ttgggacttc aaggcataca aaaactttca cttattgtag 3420 tgttacggac gataagttgc ttttagatat cgccgacgtc ggtggtattg cacatacacc 3480 tattcgtact tttgaatctc atatagttta aaaaaaaaaa aaaaaaaaaa tgtttgatca 3540 gatcattcaa atctgatggt gcccatcaac catatgatgg gagtgtttgc aagtccacta 3600 taatcgaact tgaaaacgat gcctgaattg gaaaccatga atcttaacgg attctggaga 3660 gaaaatttag gaattggtat gtaagctaca acttccggta gctgcgtcac actttaagag 3720 tgtgcatact gagccgaagc tcagcttcgg tcccccaagg gaagacca 3768 //