Dbfetch

Dbfetch

ID   HQ997896; SV 1; linear; genomic RNA; STD; VRL; 1367 BP.
XX
AC   HQ997896;
XX
DT   13-JUL-2012 (Rel. 113, Created)
DT   13-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Suakwa aphid-borne yellows virus isolate SABYV-PH16 RdRp protein (RdRp),
DE   coat protein (CP), and movement protein (MP) genes, partial cds.
XX
KW   .
XX
OS   Suakwa aphid-borne yellows virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1367
RA   Knierim D., Tsai W.S., Dolores L.M., Kenyon L.;
RT   "First report of Suakwa aphid-borne yellows virus in Luffa acutangula and
RT   Momordica charantica in the Philippines";
RL   Unpublished.
XX
RN   [2]
RP   1-1367
RA   Knierim D., Tsai W.S., Dolores L.M., Kenyon L.;
RT   ;
RL   Submitted (24-JAN-2011) to the INSDC.
RL   Virology, AVRDC- The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL   74199, Taiwan
XX
DR   MD5; 1cf300ba909e5c6ccd8382df11cb6815.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1367
FT                   /organism="Suakwa aphid-borne yellows virus"
FT                   /host="Momordica charantia (bitter gourd)"
FT                   /isolate="SABYV-PH16"
FT                   /mol_type="genomic RNA"
FT                   /country="Philippines:Laguna"
FT                   /collection_date="22-Nov-2010"
FT                   /db_xref="taxon:646010"
FT   gene            <1..579
FT                   /gene="RdRp"
FT   CDS             <1..579
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RdRp protein"
FT                   /db_xref="GOA:I6NSG4"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:I6NSG4"
FT                   /protein_id="AEX66161.1"
FT                   /translation="SVSSWMLEDDMEVRNNLTINNNELTRRLRACWLKCISNSVICLSD
FT                   GTLLAQEFPGIQKSGSYNTSSTNSRVRVMLSIYAGASWAVAMGDDALESADTIIPIYEL
FT                   YGLKVEVSDKLEFCSHEFKSSSLAIPTNIGKMIYKLIHGYEIFPGMSSIQVTINYLTAC
FT                   YSVLNELRHVPEAASLVAQCLAPVEAQKV"
FT   misc_feature    578..778
FT                   /note="intergenic NCR"
FT   gene            779..>1367
FT                   /gene="CP"
FT   CDS             779..>1367
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:I6NRZ9"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:I6NRZ9"
FT                   /protein_id="AEX66162.1"
FT                   /translation="MNTVVVRNRNGMGRRRRNRRNIAKGNRVVVVQAPRAPQRGRRRRR
FT                   NGRRPSRGGRAGGTSQGETFVFSKDNLTGSSSGAITFGPSLSDSPAFSSGILKAYHEYK
FT                   ISMVKLEFISEASSTSSGSISYELDPHCKLSSLQSTVNKFGITKSGSRTWGAKFINGTE
FT                   WHDATEDQFRILYKGNGSSSTAGSFRITIKCHV"
FT   gene            807..>1367
FT                   /gene="MP"
FT   CDS             807..>1367
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:I6NNP4"
FT                   /protein_id="AEX66163.1"
FT                   /translation="MAWEEGEGTAGTLQKATAWLWSKPLGLHSAEDDDDETADVLLEEA
FT                   ELEEQAKARHLYSARTISRAVPLEQSLSGRLYQTAQHSALEYSRPTMSIKSQWLSWSSS
FT                   PRPLPRPPVPSLMSWTPIASLAPSNPRLINSESPRVDHERGALSLLTGRNGTTPPRISS
FT                   ASCIKETGVPRRRDLLESPSSAMS"
XX
SQ   Sequence 1367 BP; 371 A; 344 C; 322 G; 330 T; 0 other;
     agcgtctcat cttggatgct cgaggatgac atggaggtta gaaataacct caccatcaat        60
     aacaacgagc tcaccaggcg ccttcgcgct tgctggttga agtgcatatc gaactctgtg       120
     atatgcctgt ccgatgggac tttactcgcc caggagtttc ccggtataca aaaatcgggc       180
     tcctataaca ccagctccac gaactcaaga gtgagagtta tgctctctat ttacgctggt       240
     gcttcctggg ccgtagctat gggcgatgac gcccttgagt ccgccgatac gataatccca       300
     atatatgaat tatacggact caaagtcgag gtctctgaca aactggaatt ttgttctcat       360
     gagttcaaaa gttcgagcct cgccatcccc acgaatatag ggaaaatgat ttacaagctc       420
     atacatggat atgagatctt cccggggatg tccagcattc aggttactat caattatttg       480
     actgcctgct actcagttct aaacgaactg cgtcacgtgc ctgaagctgc ttctcttgtc       540
     gcgcagtgcc tcgctccagt cgaggcacaa aaagtttaaa caaaagcgcg cgcataaaac       600
     tagccggaaa tacgttgttg caattgccgg aagttaacag tcaactacaa cataggccaa       660
     ccagatttca agtttttagc aggatttact tcgggcttcc tgacagctgt tccaatttca       720
     gcacttggcc tatatttaat ctacctaaag atttctaaac acgtgcaatc aattgttaat       780
     gaatacggtc gtggttagaa atcgaaatgg catgggaaga aggagaagga accgccggaa       840
     cattgcaaaa ggcaaccgcg tggttgtggt ccaagcccct agggctccac agcgcggaag       900
     acgacgacga cgaaacggcc gacgtccttc tcgaggaggc agagctggag gaacaagcca       960
     aggcgagaca tttgtattca gcaaggacaa tctcacgggc agttcctctg gagcaatcac      1020
     tttcgggccg tctttatcag acagcccagc attcagctct ggaatactca aggcctacca      1080
     tgagtataaa atctcaatgg ttaagttgga gttcatctcc gaggcctctt ccacgtcctc      1140
     cggttccatc tcttatgagt tggaccccca ttgcaagctt agctccctcc aatccacggt      1200
     taataaattc ggaatcacca agagtggatc acgaacgtgg ggcgctaagt ttattaacgg      1260
     gacggaatgg cacgacgcca ccgaggatca gttccgcatc ctgtataaag gaaacgggag      1320
     ttcctcgacg gcgggatctt ttagaatcac catcaagtgc catgtcc                    1367
//