ID   HQ916906; SV 1; linear; genomic RNA; STD; VRL; 1677 BP.
XX
AC   HQ916906;
XX
DT   26-JUL-2011 (Rel. 109, Created)
DT   26-JUL-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Rice black streaked dwarf virus isolate SDjining2 capsid protein gene,
DE   complete cds.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1677
RA   Gao R.Z., Cheng Z.B., Zhou Y.J.;
RT   ;
RL   Submitted (23-JAN-2011) to the INSDC.
RL   Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences,
RL   No. 50.Zhongling Road, Nanjing, Jiangsu 210014, China
XX
DR   MD5; 1884694308434dc96bf9bc4af2bf6bf7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1677
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="10"
FT                   /host="rice"
FT                   /isolate="SDjining2"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="Aug-2009"
FT                   /db_xref="taxon:10990"
FT   CDS             1..1677
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="InterPro:IPR008618"
FT                   /db_xref="UniProtKB/TrEMBL:G0ZCL2"
FT                   /protein_id="AEK67416.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT                   LNIVKAPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNTTQLKDHIRSFFQNEHQ
FT                   PIFQTLTDNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL
FT                   EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLIRTGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT                   SLLEQTWSAVASFVETWQVKSKVKADDPDEYELTSLSTLRTNYDGTSTSSPFTDKKFID
FT                   WYIKTFSKTEKGSSLRRNELEEKSATNTSTTVKKVKIHFSVQYFDEFKVNGHEKSIVVQ
FT                   THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVIMKKYNLTID
FT                   DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNAMNSVIISRA
FT                   NNLLKSDRDRLLKKALSANVSSSNTSSHEHTQKIVLNKVTR"
XX
SQ   Sequence 1677 BP; 554 A; 310 C; 291 G; 522 T; 0 other;
     atggctgaca taagactcga catagcgccc gatcttatcc ataatggtgt accccagaga        60
     ctttccgata caataatttt aaacaaccga ccaacaatca ctctgttatc tcatttcaac       120
     aatctatttc atgaattgaa cattgtcaaa gcgccccacg ttgcatcttc ccaaactacc       180
     gttaatttgt acattcgcaa acatttgttg acccgacttc atgatagact acaaaccgta       240
     gaaactagca ctttacccaa caccacgcaa cttaaagatc atattcgcag tttctttcaa       300
     aatgaacacc aacctatttt tcagacccta acggacaacg acctgagtga agaatttgta       360
     ggtgtgacta cttttggact aagcttattt gctacctcca aacttgatgc tgaacaaata       420
     gaacgtgtgc aaattgagac cttaactgaa ggaaacatta cgttgaagcc cttttccgct       480
     gatggtttag aagtcattct cgacgatagt tatattggta tagttggcaa aattccaggt       540
     ttagaagttc ataaattgtt agataaatgc tgtcgtgaag ttcctgctca aatgggaata       600
     cttactgatg aagttaaact tttgatacgt actggtaaat taagaattga tggtggttac       660
     gatttcaatt gtcctgcaag cactacagat gttacacact atggtggtta tgaccaattt       720
     tcgcgtcaaa tgttcgaacg tttgaatctc ttttataata ttagtcttag cataattccc       780
     gtttcagctt taaaaacagt tcatttattc gaaaaagaat taagtgtttt ggatgcagat       840
     aaatctttac tcgaacagac ttggagcgca gtagcgtcat ttgttgaaac ttggcaagtt       900
     aaatctaaag ttaaagctga tgatcccgat gaatacgaac tgaccagttt gtccactttg       960
     cgtactaatt acgatggtac ttctacttct agtcctttta cagataagaa attcattgac      1020
     tggtatatta agactttttc taagactgaa aaaggatcgt ctttacgtcg aaatgaatta      1080
     gaagagaaaa gtgccactaa tacttcaacc acagtaaaga aggttaaaat tcatttctct      1140
     gttcaatatt ttgacgaatt taaagttaat ggacatgaaa aaagcattgt agttcaaact      1200
     cataaaggtg aaatgacact agattattac cgtaaaattg gcgaagtatt aagtgcgatt      1260
     tggaaacgcg gtaaatcttt ggctgtacct tgttttgatt acattaaact tggcgttgaa      1320
     aaagcatttc atttggcacc cgtaattatg aagaagtata acttgacgat cgacgacatt      1380
     atcaacttca ttgataaagg accttcttat ttggctaagt tagacaaaat tgatgattgg      1440
     tctctaattt caaagcttat tattaccagt gttttaccta acattattca agctgtttat      1500
     aaaaccgatc caagtaataa tgctatgaac tcagtaatta tcagtagagc gaacaacttg      1560
     ttgaaatctg atagggacag actattaaag aaggcacttt ccgccaacgt ttcttcctcc      1620
     aatacatcta gtcatgagca tacacagaag atagtactaa acaaagtgac aagatga         1677
//