ID   HQ916880; SV 1; linear; genomic RNA; STD; VRL; 1677 BP.
XX
AC   HQ916880;
XX
DT   26-JUL-2011 (Rel. 109, Created)
DT   26-JUL-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Rice black streaked dwarf virus isolate HBbaoding3 capsid protein gene,
DE   complete cds.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1677
RA   Gao R.Z., Cheng Z.B., Zhou Y.J.;
RT   ;
RL   Submitted (23-JAN-2011) to the INSDC.
RL   Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences,
RL   No. 50.Zhongling Road, Nanjing, Jiangsu 210014, China
XX
DR   MD5; 1b5a9b1761d03860b755ab1085ce03cc.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1677
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="10"
FT                   /host="maize"
FT                   /isolate="HBbaoding3"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="Aug-2009"
FT                   /db_xref="taxon:10990"
FT   CDS             1..1677
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="InterPro:IPR008618"
FT                   /db_xref="UniProtKB/TrEMBL:G0ZCI6"
FT                   /protein_id="AEK67390.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT                   LNIVKSPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ
FT                   PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL
FT                   EAILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT                   SLLEQTWSAVASFVETWQVKSKVKADDPDEYELTSLSTLRTNYDGTSASSPFTDKKFID
FT                   WYIKTFSKTEKGSSLRRNELEEKSATSTSTTVKKVKIHFSVQYFDEFKVNGHEKSVVVQ
FT                   THKGEMTLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVILKKYNLTID
FT                   DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKSDRDRLLKKALSANVSSSNTSSHEHVQKIVLNKVTR"
XX
SQ   Sequence 1677 BP; 549 A; 302 C; 294 G; 532 T; 0 other;
     atggctgaca taagactcga catagcgccc gatcttatcc ataatggtgt accccagaga        60
     ctttccgata caataatttt aaacaaccga ccaacaatca ctctgctatc tcatttcaac       120
     aacctatttc atgaactaaa cattgtcaaa tcgccccacg ttgcatcttc ccaaactact       180
     gttaatttgt acattcgtaa gcatttgttg acccgacttc atgatagact acaaaccgta       240
     gaaactagca ctttgcccaa cattacacaa cttaaagacc atattcgtag cttttttcaa       300
     aatgaacacc aacctatttt tcagacccta acgaacaacg acctaagtga agaatttgta       360
     ggtgtgacta cttttggact aagcttattt gctacctcca aacttgatgc tgaacaaata       420
     gaacgtgtac aaattgagac cctaactgaa ggaaacatta ctttgaaacc cttttctgct       480
     gatggtttag aagctattct tgatgatagt tatattggta tagttggtaa aattccaggt       540
     ttagaagttc ataaattgct agataaatgt tgtcgtgaag ttcctgctca aatgggaata       600
     cttactgatg aagttaaact tttgatgcgt actggtaaat taagaattga tggtggttac       660
     gattttaatt gtcctgcaag cactactgat gttacacatt atggtggtta tgaccaattt       720
     tcacgtcaaa tgttcgaacg cttgaatcta ttttataaca ttagccttag cataattccc       780
     gtttcagctt tgaaaacagt ccatttattt gaaaaagaac taagtgtttt agatgcagat       840
     aaatctttac tcgaacaaac ttggagcgcg gtagcgtcat ttgttgaaac ttggcaggtt       900
     aaatctaaag ttaaagccga tgatccagat gaatatgaat tgaccagttt gtccactttg       960
     cgcactaatt acgatggcac ctctgcttct agtcctttta cagataagaa attcattgat      1020
     tggtacatta agactttttc taagactgag aaaggatcgt cgttgcgtcg aaacgaatta      1080
     gaagagaaaa gtgccactag tacttcaact acagtaaaga aggtgaaaat tcatttctcc      1140
     gttcaatatt ttgatgaatt taaagttaat ggacatgaaa aaagcgttgt agttcaaact      1200
     cataaaggtg aaatgacgtt agattattat cgtaaaattg gcgaagtgtt aagtgctatt      1260
     tggaaacgtg gtaaatcttt ggctgtacct tgttttgatt acattaagct tggcgttgag      1320
     aaagcatttc atttagcacc cgtaattctg aagaagtata atttgactat tgatgacatt      1380
     atcaacttta ttgataaagg accttcttat ttagctaaat tagacaagat tgatgattgg      1440
     tctttaattt caaagctcat cattaccagc gttttaccta atatcattca agctgtttac      1500
     aaaactgatc caagtaataa tgttatgaac tcagtaatca tcagtagagc gaacaatttg      1560
     ttgaaatctg atagggacag gctattaaag aaggcacttt ccgccaacgt ttcttcttcc      1620
     aacacatcta gtcatgaaca tgtacagaag atagtactaa acaaagtgac aagatga         1677
//