ID HQ916353; SV 1; linear; genomic RNA; STD; VRL; 3048 BP. XX AC HQ916353; XX DT 17-APR-2011 (Rel. 108, Created) DT 17-APR-2011 (Rel. 108, Last updated, Version 1) XX DE Cucumber mosaic virus isolate Gd RNA-dependent RNA polymerase (2a) and DE virus-induced gene silencing supressor (2b) genes, complete cds. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3048 RA Balazs E., Salanki K., Diveki Z., Kadar K.; RT "Molecular characterization of Cucumber mosaic virus (CMV) isolated from RT oilseed pumpkin"; RL Unpublished. XX RN [2] RP 1-3048 RA Balazs E., Salanki K., Diveki Z., Kadar K.; RT ; RL Submitted (21-JAN-2011) to the INSDC. RL Applied Genomics Department, Agricultural Research Institute of the RL Hungarian Academy of Sciences, Brunszvik Str. 2, Martonvasar H-2462, RL Hungary XX DR MD5; f438e99af36a6e948552d18008a04c03. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3048 FT /organism="Cucumber mosaic virus" FT /host="oilseed pumpkin" FT /isolate="Gd" FT /mol_type="genomic RNA" FT /country="Austria" FT /collection_date="2005" FT /db_xref="taxon:12305" FT gene 88..2661 FT /gene="2a" FT CDS 88..2661 FT /codon_start=1 FT /gene="2a" FT /product="RNA-dependent RNA polymerase" FT /note="2a protein" FT /db_xref="GOA:F5BIK4" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:F5BIK4" FT /protein_id="AEB39607.1" FT /translation="MAFPAPAFSLANLLNGSYGVDTPEDVERLRSEQREEAAAACRNYR FT PLPAVDVSESVTEDAHSLRTPDGAPAEAVSDEFVTYGAEDYLEKSDDELFVAFETMVKP FT MRIGQLWCPAFNKCSFISSIAMARALLLAPRTSHRTMKCFEDLVAAIYTESDFYYSEEY FT EADDAQIDISSRDVPGYSFEPWSRTSGFEPPPICEACDMIMYQCPCFDFNALKKSCAER FT TFADDYVIEGLDGVVDNATLLSNLGPFLVPVKCQYEKCPTPTIAIPPDLNRATDRVDIN FT LVQSICDSTLPTHSNYDDSFHQVFVESADYSIDLDHVRLRQSDLIAKIPDSGHMIPVLN FT TGSGHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAERFFISYINGNSLASSN FT FVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPVP FT ATITYHKKSITSQFSPLFTALFERFQRCLRERIILPVGKISSLEMAGFDVKNKHCLEID FT LSKFDKSQGEFHLLIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGVGMPISFQRRT FT GDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSLLPPVGDPSKFTTLFNMEA FT KVMEPAVPYICSKFLLSDEFGNTFSVPDPLREVQRLGTKKIPYSDNDEFLFAHFMSFVD FT RLKFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYKELYYSDRRQC FT ELINSFCSTEFRVERVNSNKQRKKYGIERRCNDKRRTPTGSYGGGEEAETKVSQTESTG FT TRSQKSQRESAFKSQTVPLPTVLSSGRFGTDRVMPPCERGGVTRA" FT gene 2420..2752 FT /gene="2b" FT CDS 2420..2752 FT /codon_start=1 FT /gene="2b" FT /product="virus-induced gene silencing supressor" FT /note="VIGS supressor" FT /db_xref="InterPro:IPR004946" FT /db_xref="UniProtKB/TrEMBL:F5BIK5" FT /protein_id="AEB39608.1" FT /translation="MELNVGAMTNVELQLARMVEVKKQRRRSHKQNRRERGHKSPSERA FT RSNLRLFRFLPFYQVDGSELTGSCRHANVAELPEPEASRLKLSAEDHDFDDTDWFAGNE FT WAEGAF" XX SQ Sequence 3048 BP; 781 A; 682 C; 698 G; 887 T; 0 other; gtttatttac aagagcgtac ggttcaaccc ctgcctcctc tgtaaaactc cctagactta 60 aaacttcttc tttctagtat cttttctatg gctttccctg cccccgcatt ctcactagcc 120 aatcttttga acggtagtta cggtgtcgac actcccgagg atgtggaacg cttgcgatct 180 gagcaacgcg aagaggctgc tgcggcttgt cgtaattaca ggcccctacc cgctgtggat 240 gtcagcgaga gtgtcacaga ggacgcacat tccctccgaa ctcctgacgg agctcccgct 300 gaagcggtgt ctgatgagtt tgtaacttat ggtgctgaag attaccttga aaaatctgat 360 gatgagctct ttgtcgcttt tgagacgatg gtcaaaccca tgcgtatcgg acaactatgg 420 tgccctgcgt ttaataaatg ttcttttatt tccagcattg ctatggccag agctttgttg 480 ttggcaccta gaacatccca ccgaaccatg aagtgttttg aagacctggt cgcggctatt 540 tacactgaat ctgatttcta ttacagtgaa gagtatgaag ccgacgacgc tcagatagat 600 atctcgtctc gcgatgtacc cggttattct ttcgaaccgt ggtcccgaac gtctggattt 660 gaaccgccgc ccatttgtga agcgtgcgac atgatcatgt accagtgccc gtgttttgat 720 ttcaatgctt taaagaaatc gtgcgctgag aggactttcg ctgatgatta tgttattgaa 780 ggtttggatg gtgttgttga taatgcgact ctgttgtcga atttaggtcc atttttggta 840 cctgtgaaat gtcaatatga aaaatgtcca acaccaacca tcgcgattcc tccggattta 900 aatcgtgcta ctgatcgtgt tgatatcaat ttagttcaat ccatttgtga ctcgactctg 960 cccactcata gtaattacga cgactctttt catcaagtgt tcgtcgaaag tgcagactac 1020 tctatagatc tggatcatgt tagacttcga cagtctgatc ttattgcaaa aattccagat 1080 tcagggcata tgataccggt tctgaacacc gggagcggtc acaagagagt aggtacaacg 1140 aaggaggtcc ttacagcaat taagaaacgt aatgctgacg ttccagagct aggtgattcc 1200 gttaatctgt ctagattgag taaagctgtg gctgagagat tcttcatttc atacatcaat 1260 ggtaactctc tagcatccag taactttgtc aatgtcgtta gtaatttcca cgattacatg 1320 gaaaagtgga agtcctcagg tctctcttat gatgatcttc cagatcttca tgctgagaat 1380 ttgcaattct atgaccacat gataaaatcc gatgtgaaac ctgtagtgag cgacacactc 1440 aatatcgaca gaccggttcc agctactata acgtatcata agaagagtat aacctcccag 1500 ttctcaccgt tattcacagc gctattcgag cgcttccaga gatgccttcg agaacgcatt 1560 attcttccgg ttggtaagat ttcatccctt gagatggcag gatttgacgt caaaaacaaa 1620 cactgcctcg agattgatct gtctaagttt gataagtctc aaggtgaatt tcatttgcta 1680 atccaggaac acatattgaa tggtctagga tgtccagctc caataactaa gtggtggtgt 1740 gatttccacc gattctctta catcagagat cgtagagctg gtgttggtat gcctattagt 1800 ttccagagac gaactggtga tgcattcact tattttggca ataccattgt caccatggct 1860 gagtttgcct ggtgttatga caccgaccaa ttcgaaaagc ttttattctc aggcgatgat 1920 tctctaggat tttcactgct tccccctgtt ggtgatccga gtaaattcac aactcttttc 1980 aacatggaag ctaaggtgat ggaacctgca gtaccatata tttgttcgaa gttcttactc 2040 tctgacgagt tcggtaacac attttccgtt ccagatccat tgcgcgaggt tcagcggttg 2100 ggaacaaaga aaattcccta ttctgacaat gatgaattct tgtttgctca cttcatgagc 2160 tttgttgatc gattgaagtt tttggaccga atgtctcagt cgtgtatcga tcaactttcg 2220 attttcttcg aattgaaata caagaagtct ggggaagagg ctgctttaat gctaggcgcc 2280 tttaagaagt ataccgctaa tttccagtcc tacaaagaac tctattattc agatcgtcgt 2340 cagtgcgaat tgatcaattc gttttgtagt acagagttca gggttgagcg tgtaaattcc 2400 aataaacagc gaaagaaata tggaattgaa cgtaggtgca atgacaaacg tcgaactcca 2460 actggctcgt atggtggagg tgaagaagca gagacgaagg tctcacaaac agaatcgacg 2520 ggaacgaggt cacaaaagtc ccagcgagag agcgcgttca aatctcagac tgttccgctt 2580 cctaccgttc tatcaagtgg acggttcgga actgacaggg tcatgccgcc atgcgaacgt 2640 ggcggagtta cccgagcctg aggcctctcg tttaaagtta tcggcggaag accatgattt 2700 tgacgataca gattggttcg ccggtaacga atgggcggaa ggtgctttct gaaacctccc 2760 cttcctctcc ctccggtttt ctgtggcggg agctgagttg gcagtattgc tataaactgt 2820 ctgaagtcac taaacacatt gtggtgaacg ggttgtccat ccagcttacg gctaaaatgg 2880 tcagtcgtag agaaatctac gccagcagac ttacaagtct ctgaggcacc tttgaaacca 2940 tctcctaggt ttcttcggaa ggacttcggt ccgtgtactt ctagcacaac gtgctagttt 3000 cagggtacgg gtgcccccca ctttcgtggg gcctccaaaa ggagacca 3048 //