ID   HQ910408; SV 1; linear; genomic DNA; STD; VRL; 1177 BP.
XX
AC   HQ910408;
XX
DT   31-MAY-2011 (Rel. 109, Created)
DT   05-APR-2013 (Rel. 116, Last updated, Version 3)
XX
DE   Jatropha mosaic India virus isolate Aligarh coat protein (AV1) gene,
DE   partial cds; replication enhancer protein (AC3) and transcriptional
DE   activator protein (AC2) genes, complete cds; and replication-associated
DE   protein (AC1) gene, partial cds.
XX
KW   .
XX
OS   Jatropha mosaic India virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1177
RA   Baghel G., Naqvi Q.A., Snehi S.K., Raj S.K.;
RT   "Molecular identification of three isolates of Jatropha mosaic India virus
RT   associated with mosaic disease of Withania somnifera in India";
RL   Arch. Phytopathol. Pflanzenschutz 45(17):2114-2119(2012).
XX
RN   [2]
RP   1-1177
RA   Baghel G., Naqvi Q.A., Afreen B., Snehi S.K., Raj S.K., Khan M.S.;
RT   ;
RL   Submitted (20-JAN-2011) to the INSDC.
RL   Plant Molecular Virology, National Botanical Research Institute, Rana
RL   Pratap Marg, Lucknow, U.P. 226001, India
XX
DR   MD5; 6b13f0098ac5c20e9f422bbbf169ae24.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1177
FT                   /organism="Jatropha mosaic India virus"
FT                   /segment="DNA-A"
FT                   /host="Withania somnifera"
FT                   /isolate="Aligarh"
FT                   /mol_type="genomic DNA"
FT                   /country="India:Aligarh, AMU Campus"
FT                   /collected_by="G. Baghel"
FT                   /collection_date="Oct-2009"
FT                   /db_xref="taxon:1034067"
FT   gene            <1..357
FT                   /gene="AV1"
FT   CDS             <1..357
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:F6LD17"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:F6LD17"
FT                   /protein_id="AEF65957.1"
FT                   /translation="LVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMYRDRYQVLRKWS
FT                   STVTGGQYASKEQAIVRRFFRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNDVDA
FT                   TLKIRIYFYDSVSN"
FT   gene            complement(354..758)
FT                   /gene="AC3"
FT   CDS             complement(354..758)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /note="involved in encapsidation of virion"
FT                   /db_xref="GOA:F6LD18"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:F6LD18"
FT                   /protein_id="AEF65958.1"
FT                   /translation="MDSRTGELITAAQAMNGVYTWEVPNPLYFKIIDHSSRPFLMEHDI
FT                   ITVQIRSNHNLRKALGLHQCWMDFKIWTTLRPQTLRFLRVFRYQVLRYLDMLGVICINT
FT                   VVRAVEHVLYSVLTGTDSIEQSNLIKFKIY"
FT   gene            complement(499..906)
FT                   /gene="AC2"
FT   CDS             complement(499..906)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional activator protein"
FT                   /db_xref="GOA:F6LD19"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:F6LD19"
FT                   /protein_id="AEF65959.1"
FT                   /translation="MRPSSPSTGHSTPVPIKVQHRAPKRRAIRQRKVNLNCGCSYYVHI
FT                   NCHNHGFTHRGTHHCSSGDEWRLYLGGSKSPLFQDHRPQQPAVPDGTRHNNRPDTVQPQ
FT                   PEESVGTTSMLDGFQNLDDLTASDLAFLEGF"
FT   gene            complement(836..>1177)
FT                   /gene="AC1"
FT   CDS             complement(836..>1177)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication-associated protein"
FT                   /db_xref="GOA:F6LD20"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="UniProtKB/TrEMBL:F6LD20"
FT                   /protein_id="AEF65960.1"
FT                   /translation="LCGHLDLIPRVYKTNAGYNVIDDVNPHYLKHFREFMGAQRDWQSN
FT                   TKYGKPFQIKGGIPTIFLCNPGPISSYKNFLDNPKNTALKAWAIKNATFISLDGPLYSS
FT                   ANQGSTQGT"
XX
SQ   Sequence 1177 BP; 287 A; 251 C; 300 G; 339 T; 0 other;
     ctcgtcaggg atcgtaggcc cgtggacaaa ccccaggatt ttggtgaggt gttcaacatg        60
     ttcgataacg agcccagtac tgctacggtt aaaaacatgt accgtgatcg gtaccaggtg       120
     ttaaggaagt ggagttccac tgtcactggt ggtcagtatg cgagcaaaga gcaggcaata       180
     gttaggcgtt tttttagggt taataattat gttgtgtata atcagcaaga ggctggtaag       240
     tacgaaaacc atacggagaa tgcattgatg ctgtacatgg cgtgtactca cgcctctaac       300
     gacgtagatg ctacgcttaa gatacggatc tacttctacg attcagtatc caattaataa       360
     attttaaatt ttattaaatt tgactgctca atactgtcag tccctgtgag tacactgtac       420
     aatacatgct ctacggctct aacgaccgta tttatacata tgacccctaa catgtccagg       480
     tatctgagta cctggtacct aaaaaccctc aagaaacgca aggtctgagg ccgtaaggtc       540
     gtccagattt tgaaatccat ccagcattga tgtagtccca acgctttcct caggttgtgg       600
     ttggaccgta tctggacggt tattatgtcg tgttccatca ggaacggccg gctgctgtgg       660
     tctatgatct tgaaatagag gggatttgga acctcccagg tatagacgcc attcatcgcc       720
     tgagctgcag tgatgagttc ccctgtgcgt gaatccatgg ttgtggcagt tgatgtgcac       780
     gtagtacgag cacccgcagt tgaggtttac tttccgttgc cggatggccc tacgcttagg       840
     tgccctgtgt tgaaccttga ttggcactgg agtagagtgg cccgtcgagg gagatgaagg       900
     tcgcattttt tattgcccaa gccttcaaag ccgtattttt tgggttgtca aggaaatttt       960
     tatagctgga aatgggccca ggattgcaca ggaagatagt gggtatccca cctttaattt      1020
     gaaatggctt tccgtatttg gtgttgcttt gccagtccct ttgggccccc atgaattccc      1080
     tgaagtgctt taggtagtgg ggatttacgt catcaatgac gttgtacccc gcgttggttt      1140
     tgtagaccct aggaatcaag tccagatggc cacatag                               1177
//