ID HQ874434; SV 1; linear; genomic RNA; STD; VRL; 3359 BP. XX AC HQ874434; XX DT 17-APR-2011 (Rel. 108, Created) DT 21-JUN-2011 (Rel. 109, Last updated, Version 2) XX DE Cucumber mosaic virus isolate Gd 1a protein (1a) gene, complete cds. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3359 RA Balazs E., Salanki K., Diveki Z., Kadar K.; RT "Molecular characterization of Cucumber mosaic virus (CMV) isolated from RT oilseed pumpkin"; RL Unpublished. XX RN [2] RP 1-3359 RA Balazs E., Salanki K., Diveki Z., Kadar K.; RT ; RL Submitted (11-JAN-2011) to the INSDC. RL Applied Genomics Department, Agricultural Research Institute of the RL Hungarian Academy of Sciences, Brunszvik Str. 2, Martonvasar H-2462, RL Hungary XX DR MD5; 8c8f9a8360e6c168345ad9c19c3b0123. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3359 FT /organism="Cucumber mosaic virus" FT /host="oilseed pumpkin" FT /isolate="Gd" FT /mol_type="genomic RNA" FT /country="Austria" FT /collection_date="2005" FT /db_xref="taxon:12305" FT gene 95..3076 FT /gene="1a" FT CDS 95..3076 FT /codon_start=1 FT /gene="1a" FT /product="1a protein" FT /note="putative RNA helicase and methyltransferase" FT /db_xref="GOA:F5BFC6" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F5BFC6" FT /protein_id="AEB39611.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLGVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTQPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHATTILKGTMMSDGAMMFDDQ FT GVIPELNCQWRKIRSAFSESEDVTPLVGKLNSTVFSRVRKFKTMVAFDFINESTMSYVH FT DWENIKSFLTDQTYSYRGMTYGIERCVIHAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASHDLVEWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASSISKWFAALTR FT PLRVFFSSVVHALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAYVATQ FT AVTDGKILAAQKAEKLAEKLAQPVSEVSDSPETSSQTPDDTADVCGREREVSELDSLSA FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKENSLEGNLKFVFD FT TYFTVDPMVNIHFSTGRWMRPVPEGIVYSVGYNERGLGPKSDGELYIVSSECVICNSES FT LSTVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS FT SDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTKW FT VCQSKVKRSVTSRAIATVTLVDLDSSRFYITMTQADKASLISRAKEMNLPKTFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKVTFRYEYCGVLNGDLIAEC FT VARA" XX SQ Sequence 3359 BP; 839 A; 751 C; 818 G; 951 T; 0 other; gtttatttac aagagcgtac ggttcaatcc ctgcctcccc tgtaaaacta ccctttgaaa 60 acctctcttt cttagtcttt tctttgtaat tcctatggcg acgtcctcgt tcaacatcaa 120 tgaattggta gcctcccacg gcgataaagg actactcgcg accgccctcg ttgataagac 180 agctcatgag cagctcgagg agcaattaca gcatcaacgt agaggccgta aggtctacat 240 ccggaacgtt ttgggtgtaa aggattccga ggtcatccgg aatcggtatg gaggaaagta 300 cgacctccat cttacccagc aggagtttgc tccccacggc ctagctggtg ccctccgctt 360 gtgtgaaact ctcgattgtc tagactcttt cccttcatca ggtctgcggc aagacctcgt 420 cttagacttc ggaggaagtt gggtcacaca ttacctccgc ggacataacg tacactgttg 480 ttccccttgt ttgggtatcc gcgataagat gcgccatgcg gaacgcttaa tgaacatgcg 540 caagatcatc ttgaacgatc cacaacagtt cgatggtcgg cagccggatt tctgcactca 600 accggctgcg gattgcaaag tacaagccca ctttgctata tctattcatg gaggttatga 660 tatgggcttt agaggattat gtgaagcgat gaatgctcac gcaaccacta ttttgaaggg 720 aacgatgatg tccgatggtg cgatgatgtt tgacgaccaa ggtgtaatac ccgaacttaa 780 ttgtcagtgg aggaagatca ggagtgcttt ctccgaatct gaagacgtca caccactggt 840 tggtaagctt aattccacag ttttctcccg cgtgcggaag tttaagacga tggtagcttt 900 tgatttcatc aacgagtcta ctatgtctta tgttcatgat tgggagaata taaaatcttt 960 tcttacggac cagacttatt cgtaccgagg gatgacttac ggtatcgaac gctgcgttat 1020 ccacgctggt attatgacgt acaagattat cggtgtacct gggatgtgcc cacccgaact 1080 cattcgacat tgtatttggt tcccctctat taaagactat gttggtctaa agattcccgc 1140 gtcgcacgat ttggttgagt ggaaaacagt gcggatttta acgtcaacat tacgtgagac 1200 tgaagagatt gccatgaggt gttacaatga taagaaagcg tggatggaac aattcaaggt 1260 tatcctaggt gttctatccg cgaaatcatc taccattgtt attaatggta tgtccatgca 1320 atctggcgag cgaatagaca ttaatgatta tcactacatc ggtttcgcca ttcttcttca 1380 cacaaaaatg aagtacgaac aacttggaaa aatgtatgat atgtggaatg cttcgagtat 1440 ttcgaagtgg tttgccgcgt tgactcgtcc gctgcgtgtg tttttctcca gtgttgttca 1500 cgcgctattc ccgactttga gaccccgcga ggaaaaagaa tttttgatca agctctccac 1560 cttcgtgact tttaatgaag agtgctcatt tgacggtgga gaggaatggg acgtgatatc 1620 atccgctgca tacgttgcta cgcaggctgt taccgatggg aagattttgg ctgcgcagaa 1680 agccgagaag cttgctgaga agcttgcaca acccgtgagt gaggtatcgg acagtcctga 1740 gacgtcatct caaacgcctg atgatactgc tgatgtttgt ggaagggagc gagaggtttc 1800 ggaactcgac tccctatcag ctcagacgcg ttcccccatc actagagttg ctgaaagggc 1860 tactgctatg ttagagtatg ccgcttatga gaaacaattg cacgacacta cagtgtctaa 1920 tttaaaacgt atttggaaca tggcgggcgg tgatgacaaa gaaaactccc tcgagggtaa 1980 tttgaagttt gttttcgata cgtactttac cgttgatcct atggtgaaca ttcatttctc 2040 cacgggtcgg tggatgcgtc ctgtgcccga gggtattgtt tattctgtcg gttataatga 2100 acgcggttta ggtccgaagt ctgatggaga gctttacatt gtcagtagtg aatgcgtgat 2160 ttgtaacagt gaatctttat ccactgtcac gcgttctctt caagctccaa ccgggaccat 2220 tagtcaagtt gacggagttg ctggttgtgg gaaaaccacg gcaattaaat ccatttttga 2280 gccgtccact gacatgatcg ttaccgcgaa caagaagtcc gcccaagatg tacgtatggc 2340 acttttcaaa tcgtcggatt ccaaagaagc ttgcaccttt gttcgaacag ccgattctgt 2400 cctacttaat gaatgtccga ctgttagtag ggttttggtt gacgaggtcg ttctgctaca 2460 ctttggtcaa ttatgtgccg tcatgtctaa gttgaaggcc gtgcgagcta tatgttttgg 2520 ggattcggag cagattgcct tttcctcgcg tgatgcctcg tttgacatgc gtttctccaa 2580 gattattcct gatgaaacta gtgatgctga caccacattc cgtagcccac aagatgttgt 2640 accgcttgtg cgtttaatgg ctacgaaggc ccttccgaaa ggaacccatt caaaatacac 2700 gaaatgggtt tgtcaatcta aagtgaaaag atctgttacg tctcgtgcca tcgctactgt 2760 gacattggtt gacttggatt cttccaggtt ttatataacg atgacccaag ctgataaggc 2820 ctcactgatt tcaagggcga aagagatgaa tctaccaaag actttctgga atgaaaggat 2880 taaaaccgtg catgagtctc aaggtatctc cgaagaccac gtcactttgg taagattaaa 2940 gagtacaaaa tgtgacctgt ttaaacagtt ttcttattgt ctcgttgcac tgacgagaca 3000 caaggtcaca ttccgctacg agtactgtgg tgtattgaac ggcgatttaa tcgccgaatg 3060 tgttgctcgt gcttagcggc ctccctcctt cgggcgggat ctgagttggc ggtaatctgc 3120 aaaccgtctg aagtcactaa acacattgtg tggtgaacgg gttgtccatc cagctaacgg 3180 ctaaaatggt cagtcgtgga gaaatccacg ccagtagact tacaagtctc tgaggcacct 3240 ttggaaccat ctcctaggtt tcttcggaag gacttcggtc cgtgtacttc tagcacaacg 3300 tgctagtttc agggtacggg tgccccccca ctttcgtggg ggtctctaaa aggagacca 3359 //