Dbfetch

Dbfetch

ID   HQ873808; SV 1; linear; genomic RNA; STD; VRL; 732 BP.
XX
AC   HQ873808;
XX
DT   14-OCT-2011 (Rel. 110, Created)
DT   15-FEB-2013 (Rel. 115, Last updated, Version 3)
XX
DE   Garlic virus X isolate 279-GVX6 coat protein gene, complete cds.
XX
KW   .
XX
OS   Garlic virus X
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Allexivirus.
XX
RN   [1]
RP   1-732
RA   Parrano L., Afunian M., Pagliaccia D., Douhan G., Vidalakis G.;
RT   "Characterization of viruses associated with garlic plants propagated from
RT   different reproductive tissues from Italy and other geographic regions";
RL   Phytopathol. Mediterr. 51(3):549-565(2012).
XX
RN   [2]
RP   1-732
RA   Afunian M., Parrano L., Pagliaccia D., Douhan G., Vidalakis G.;
RT   ;
RL   Submitted (12-JAN-2011) to the INSDC.
RL   Department of Plant Pathology and Microbiology, University of California,
RL   Riverside, Riverside, CA 92521, USA
XX
DR   MD5; 21c5df4a4d21fcf1e31fc76ae64fadb9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..732
FT                   /organism="Garlic virus X"
FT                   /host="Allium sativum (garlic)"
FT                   /isolate="279-GVX6"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /isolation_source="California Non Organic"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:150284"
FT   CDS             1..732
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:E0X582"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:E0X582"
FT                   /protein_id="AEP81394.1"
FT                   /translation="MGDRNQGINPNQGLNAQAQGDGTSNQSQRPNRNPTPRPQADLNAQ
FT                   NNVMPSENDLAAIASDVTSNSVATQETIREILSTLQARRPNATPKDLFSLAWACYHNGS
FT                   SRFTTMTTDAPCGMPHAELKDLVEDYCTLRQFCGYYAKTCYVTGKQQNKPPANWSRKGF
FT                   QDESKFAAFDFFNAVMSDSSPTPPGGMRFKPTHEEIVGHSMNAKMSIIESRKASNMVST
FT                   RADLLAQQQIHEAPKPLMLTF"
XX
SQ   Sequence 732 BP; 221 A; 201 C; 153 G; 157 T; 0 other;
     atgggcgatc ggaaccaagg aataaatccc aaccagggac tcaatgccca agcgcaaggt        60
     gatggaacaa gcaatcaaag tcaacgccct aataggaatc caactcctcg accccaagct       120
     gacttaaacg cccagaacaa tgtcatgcct tctgaaaatg acttagcagc gatagcaagt       180
     gatgtaactt ccaactcagt agccacacag gaaactatcc gcgaaatcct cagtaccctt       240
     caagcaaggc gacccaatgc gacacccaaa gacttatttt cgcttgcatg ggcatgctac       300
     cacaatggat catcacgatt cacgacaatg actactgacg ccccttgcgg catgcctcac       360
     gcggagctca aagacctcgt tgaagattac tgtacgctga gacaattttg tggttactac       420
     gccaaaacat gctacgtcac cgggaagcag caaaataagc caccagccaa ctggtctcga       480
     aaaggtttcc aagatgagtc aaaattcgct gcctttgatt tcttcaatgc tgtaatgagc       540
     gattcgtctc caacaccacc tggtggtatg cgatttaagc caacacatga ggagattgtg       600
     ggacactcca tgaatgcgaa gatgtccatc attgagtcgc gtaaagcctc gaatatggtt       660
     tccactcgcg ctgatctgtt ggcccaacag caaatccatg aagctccgaa accccttatg       720
     ctcacattct ga                                                           732
//