ID HQ852251; SV 1; linear; genomic DNA; STD; VRL; 7663 BP. XX AC HQ852251; XX DT 11-MAY-2011 (Rel. 108, Created) DT 17-AUG-2011 (Rel. 109, Last updated, Version 2) XX DE Gooseberry vein banding virus isolate RIB9001, complete genome. XX KW . XX OS Gooseberry vein banding associated virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7663 RX DOI; 10.1007/s11262-011-0614-8. RX PUBMED; 21533750. RA Xu D., Mock R., Kinard G., Li R.; RT "Molecular analysis of the complete genomic sequences of four isolates of RT Gooseberry vein banding associated virus"; RL Virus Genes 43(1):130-137(2011). XX RN [2] RP 1-7663 RA Xu D., Mock R.G., Kinard G.R., Li R.; RT ; RL Submitted (06-JAN-2011) to the INSDC. RL National Germplasm Resources Laboratory, USDA-ARS, 10300 Baltimore Ave., RL Beltsville, MD 20705, USA XX DR MD5; 84fb3147e2c11d76daabbc765f1917fc. XX FH Key Location/Qualifiers FH FT source 1..7663 FT /organism="Gooseberry vein banding associated virus" FT /host="Ribes rubrum cv. London market" FT /isolate="RIB9001" FT /mol_type="genomic DNA" FT /country="United Kingdom" FT /db_xref="taxon:157270" FT CDS 393..1067 FT /codon_start=1 FT /product="unknown" FT /note="ORF 1" FT /db_xref="UniProtKB/TrEMBL:F5BDD9" FT /protein_id="AEE39277.1" FT /translation="MRKHTALEFEEKAEAWERTERAARHDFVFRNLKTYPRYDTNQRFP FT SCEIPCYHYNTGAGTKVCHATISKEGGNQHFVLNSLFDLEVTQIHNQAVIHDCLTQFIQ FT YSIYKRRKKLKKSRLPTIPEGRPLATSEVSKVDPEQISQISSQLTAVKADLREIKSQQS FT QLKTGFNQLRDSIQELLSRESEPKPIEAATAEVADQLKKQLKEVKAVLEDTKKIVRSLT FT PE" FT CDS 1068..1511 FT /codon_start=1 FT /product="unknown" FT /note="ORF 2" FT /db_xref="UniProtKB/TrEMBL:F5BDE0" FT /protein_id="AEE39278.1" FT /translation="MSSWEDTSSKQIYKDAVTATNTLYTNGIGEGFVKPAELTGGQVTV FT KAIRQNNTLIELVVGISAKLDNAAAQLRSLDRRISELETAIQAKEAVSLPESIVDDLTK FT EFAKLDAGTGKKAPKIGKKGKFFVWKDPKNDDQNPNRASTSRN" FT CDS 1468..7200 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF 3; contains MP/CP/aspartic protease/RTase/RNase FT H" FT /db_xref="GOA:F5BDE1" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:F5BDE1" FT /protein_id="AEE39279.1" FT /translation="MTTRTRTEQVPRATNTRPSSRGEASSTLDDQIRGYRQAARLRHNV FT RRRLRSLSPGGFRNTLEQQLSPDQELALSRRRRANLVPAEVLYTHNNNEVVNRVYQHYE FT ERSAHVVDRQMDLRFIEEESYRRLVDEGLQFIHLGMGMVRIHMLHRNSAGIEAMIVFRD FT TRWTDDRQVIASMSVDMTHGSQLVYVIPDAMLSIHDFYNHIQVSIQTRGYNGGWTGGDS FT NMIVTRSLIGRLTNQSTTNFGYQIQGVTDYLTSHGVSCIPGEQWSVTNRSGEWRLQQSS FT IAPPEQVPTEARLRPGPRGELSMRFTNFRDQTVRERASDEDTDSGRPETSGRDETTHYV FT GALRFDLKGRSKPREEECFEVAAPDVLQSWMQQLSRSPPRQNRYEGPEWDTLGEPSGKY FT DYKVRYSAPPPTPWPTKPTGWGDEEEDLPPPRFDSSSESFSGGGEIEPLEYHESSEDSY FT EEVRRRDIENHNNLIAEGFTQEPRFPGLYAPARIEVIEEDHYEGDASEQSWSEEEPEFD FT YPQIAAVVNQNNEPELEYPTKKFQELMAKIKGFQNQKVEIAAMNAESSGSGVTSGNFVP FT PIATTGPSVYPPATGTHGTNIGPQDQGGWGGRMPRSRMPGGYGRPQRPWTLPSAQTENG FT VMLIIPEDLTLAADAINRWESITINVVSKLAFDNMQDKVDYVENLLGEREKEVWTTWRM FT KWEDEYRRMVAISDDTRNLTAAIKRVFGVHDPFTGSTFLQNQAYADLERLSCKRMEDVM FT PFLFTYYQLAAKSGRMWTNEELSDKLFRKLPEAVGPTIEKAYKERYPGLVIGVMARTNF FT IIEYLQNVCKQAALQRSLKNLNFCRTMPVPGYYEKKKYGVRKSTTYKGKPHDTHVKVIK FT DKDKNAPGRKCKCYLCGIEGHYARECPKKTVQPQRMAYFEGPALADNWDVLSVDVGESD FT SEGVCSISEGETAGRMDELAAFKTQLPYPVEFEQGMFVLTIEQVTVPAVASGWRRRTEL FT RGDQKVCPHQWSDVAEVSLEDRFCSLCGDNTPVGRRVHCTTCKANLCPVCAWLEFGIRI FT VAAKTDATKWNYLNKDELIAQLYEHNAFLTHQNKALQARIEELTKGRNNDLIDLCEGDP FT DLMAEICDELFRKPASGETSILRGKERVKLEILEEEVRGYKKEQELRTPLQKLSEGAST FT SYKAPEESDEERVGALLAEGELEKLAAVAGESYSRMPKGGLNKLYHLNVQFVIPKAEGG FT HVSFTVAAIIDTGCTCCCINGAKVPEEAQEEASYAMTFAGVNSRGTTRKKMRAGKMVIS FT GNDFYTPYISVFDMDLPDIDMLIGCNFIKAMQGGIRFEGTEVTIYKKVTTIQTTLEPIK FT LGYAEFDPDIQVELERAYYAAPVSEAELIKLRDHRLLAELKEQGFIGNDPMLHWAKNQV FT KCKLDIINPDITIQGKPPSTATPEIKDRYQRHIDALLSIGVIRPSKSRHRTAAFITYSG FT TSVDPKTGEEIRGKERMVFDYRALNNNTHKDQYTLPGINSIVAAVGNAKIYSKFDLKAG FT FHQVLMEESSIPWTAFITPVGFYEWLVMPFGIANAPAVFQRKMDNCFHKLREFVAVYID FT DILVFSNSLQEHESHLRQMLEVCRKNGLVLSPTKMKVAVTTVEFLGAIIGNGKIKLQPH FT IVKKISEVDDESLRTLKGLRSWLGIINYARNYIPNCGTLLGPLYSKTSENGDRRMSPQD FT WKLVRKVKELVKSLPDLELPPAGAYVVIETDGCMEGWGGVCKWKHKKGESASAEKVCAY FT ASGKFPAIKSTIDAEMHGVMNSLEKFQIYFMDKGEVTIRTDCQAIVAFYEKLNANKPSR FT VRWLNFCDYITNTGVKVVFEHIKGKDNVLADTLSRLTQTLAAVREMPAEQEEILRQALN FT NTEVQPKERRILMDHICGMLEAQAQKASLHQHGLNP" XX SQ Sequence 7663 BP; 2291 A; 1836 C; 2019 G; 1517 T; 0 other; tggtatcaga gcttcggctc tacgttagtc ttcatggcta gtttctaaat tacctgtgag 60 gttgtgccat aaagcctaac ccgaggttca aacccagctg aacgtcagac cttcggtctg 120 aggttgtggt gttttccgac gattgtcata gtccgaactc cggaaaagct ttctccttac 180 ggtattataa ggaggttgct gtttgaaacg ttaggagttg cagagttgca aaaggatcag 240 gcagcccgag agccgttagc cgtgggaggc gccgaggcga atagtggtgt ccctgatatg 300 agcaaggtga gcaacgagaa acgagtatct agagcagtag ccgacaccgg ccggagaata 360 gtaaagtaac gactcaagac gtgacagtct atatgcggaa acacacagcc ttagaatttg 420 aagagaaggc tgaagcttgg gagagaactg aaagggcggc gaggcacgac ttcgttttta 480 gaaacttgaa gacttacccc cggtacgata ccaaccagag gtttcccagt tgtgagatcc 540 cttgttatca ttacaatact ggcgcgggaa cgaaagtttg ccacgcaaca atctccaaag 600 aaggcggaaa ccagcacttt gtgcttaaca gtctgtttga cttagaagtc actcagatcc 660 ataaccaagc agtcatccac gactgtttga ctcagttcat ccagtactcc atctacaaga 720 gaaggaagaa actcaagaag agtagacttc caacgatccc ggagggacgg cctttggcta 780 cctctgaggt ctcgaaggta gatccggagc agatctccca gatctcatcg cagctcaccg 840 ctgtgaaggc agatctccga gagatcaaga gtcagcaatc ccagctcaag acgggattca 900 accagctgag agattccatt caggaattac tctccagaga atcggaaccc aaaccgattg 960 aagcagccac agctgaggtg gccgatcagc tcaagaagca gcttaaggaa gttaaggctg 1020 tgcttgagga caccaagaag atcgtcagat ctttgacccc ggagtagatg agcagctggg 1080 aggacacttc tagcaagcag atctacaagg acgcggtaac cgcaacaaat acgctctaca 1140 ccaacggcat cggcgaagga ttcgtcaagc cagcagagct aacagggggt caggtcaccg 1200 taaaggcgat ccgacagaac aacacgctca tcgagctagt tgttgggata agtgcgaagc 1260 tagataacgc tgccgcacaa ctaagaagcc tcgacaggag gatatcggag ctcgaaacag 1320 ccatccaggc aaaggaggct gtatccttgc cggagagtat agtcgacgac ctcaccaagg 1380 agttcgccaa gctagacgcc ggaacaggaa agaaggctcc taaaatcggg aagaaaggca 1440 agttcttcgt gtggaaagac ccgaagaatg acgaccagaa cccgaacaga gcaagtacct 1500 cgcgcaacta acacccgacc cagtagtcgc ggtgaggcgt cgtcaactct agacgaccag 1560 atacgagggt acagacaggc cgccaggctc agacacaacg tcaggcggag gttaaggagt 1620 ttatctcctg gtgggttcag gaacacgcta gagcagcagc tcagtcctga tcaagagcta 1680 gcgctaagca gaaggcgacg agcaaacctc gtacccgcag aagtgctcta tacccacaac 1740 aacaatgagg tagtcaatag agtctaccag cactacgagg agcgaagcgc gcacgtagtg 1800 gacagacaga tggaccttcg gttcatcgag gaggagtcct atcgcaggct agtcgatgag 1860 ggcttacagt tcattcacct tggcatgggg atggtaagga tccacatgtt acacagaaac 1920 tcggccggga ttgaggccat gatagtcttc agagacacaa ggtggaccga cgacaggcag 1980 gtgatagcca gcatgtccgt cgatatgaca cacggatcac agttggtata tgtgattccg 2040 gatgcgatgc tctccatcca tgatttctac aatcatatcc aggtcagcat acagaccagg 2100 ggatacaatg gaggatggac gggtggtgac tctaacatga tagtcaccag gtcactgatt 2160 ggtaggctaa ccaaccagag cacgaccaac tttggttacc aaatacaagg agtcacggac 2220 taccttacaa gccatggagt ctcttgcatt ccgggagaac agtggagcgt aaccaacaga 2280 tcaggagagt ggcgactaca gcaatcatcc attgcgccac cggagcaggt ccctacggag 2340 gctaggctaa ggccaggacc tagaggtgaa ctcagcatga ggttcacaaa cttccgagac 2400 cagacggttc gggagagggc gtcggacgaa gataccgaca gtggtagacc agaaacaagt 2460 gggcgagatg aaacaacgca ctatgtcggt gcgctgagat tcgatctcaa aggcaggtca 2520 aaaccacgag aagaggagtg cttcgaagta gcagctccag acgtgcttca aagctggatg 2580 caacagctat ccagaagtcc accaaggcag aatcgctacg aaggccctga atgggataca 2640 ctaggcgagc caagtggcaa gtatgactac aaggtcaggt actcagcacc accaccaaca 2700 ccgtggccaa ctaagccaac tggttggggg gatgaagaag aggatcttcc accaccaaga 2760 tttgactcat cgtcagaatc tttttcgggg gggggggaga tagaaccttt ggagtaccac 2820 gaaagcagcg aagacagcta tgaagaggtc agaaggcgtg atatagaaaa tcacaacaac 2880 ctcatagctg agggattcac ccaggaaccc aggttcccag gcttatacgc gccagccagg 2940 atagaagtga tcgaggaaga tcactatgaa ggtgacgcta gtgagcaaag ctggtctgag 3000 gaggagccgg aattcgacta tccccagata gcagcagtgg tgaaccaaaa caacgaaccc 3060 gaactggaat atccgacgaa gaaattccag gagcttatgg ctaaaatcaa ggggttccag 3120 aaccagaagg tggagattgc cgccatgaac gctgagtcct caggatcagg cgtaacatcg 3180 ggcaactttg tgccaccaat agcaaccact ggtccatcag tatacccgcc agctacggga 3240 acacatggca ctaacatcgg gccacaggac caaggaggtt ggggagggcg tatgcccaga 3300 agtagaatgc caggagggta tggtaggcct cagaggccat ggaccttgcc ttcagcgcag 3360 accgagaacg gcgtcatgct gatcattccg gaggatttaa ccctcgcagc agatgctatc 3420 aacagatggg agtcaatcac catcaacgtc gtcagcaaac ttgccttcga caacatgcag 3480 gacaaagtag actacgtcga aaacctgctg ggcgaacgag aaaaggaagt ttggaccact 3540 tggagaatga agtgggaaga cgagtaccgg cggatggttg ccatttcaga tgacaccaga 3600 aatctgaccg ccgcaatcaa aagggtgttt ggggtacatg acccattcac aggaagtacc 3660 ttcctacaaa accaggccta tgcggacttg gagaggttaa gctgcaaaag aatggaggac 3720 gtgatgccat tcctattcac gtactatcag ctggcagcaa aatccggtag gatgtggacg 3780 aacgaggagc tctccgacaa gctgtttcgg aagctaccag aggcagtagg ccccacaata 3840 gagaaagcct acaaagagcg ctacccaggg ttagtaattg gggtaatggc tcgaaccaac 3900 ttcatcatcg agtacctgca gaatgtgtgc aagcaagcag cattacagcg gagtttgaag 3960 aatctcaact tctgccgaac aatgccagtg ccagggtact acgagaagaa gaagtatgga 4020 gtgcgcaagt ccacaacgta caagggtaaa ccacatgaca ctcatgtgaa ggttatcaag 4080 gacaaggaca agaacgcacc agggcgcaag tgtaaatgct acctttgcgg catagaaggc 4140 cattacgcaa gggaatgccc taagaagacg gtacagccac agaggatggc gtacttcgaa 4200 ggccccgctc tcgcagataa ttgggacgtt ctctctgtag acgtcgggga aagcgacagc 4260 gaaggagtct gctccatttc tgaaggagag acagcgggca ggatggatga gctagcagcg 4320 ttcaaaaccc agctccccta ccctgtagag ttcgaacaag gcatgttcgt tctcaccatt 4380 gagcaagtca ccgtccctgc agtagcctca ggatggcgca ggcgtacaga gctacgaggt 4440 gaccagaagg tgtgtccgca ccaatggagt gacgtcgccg aagtgtcact agaggacaga 4500 ttctgttctc tctgcggaga caatacgcca gtcggcagaa gggtacactg cacgacatgt 4560 aaggcaaacc tgtgcccagt ttgcgcttgg ttggagtttg gcatcagaat tgtagcagcc 4620 aaaaccgacg ccaccaagtg gaactaccta aacaaggatg agttgatcgc tcagctgtac 4680 gagcacaacg cattccttac tcaccagaac aaagctctgc aagctagaat tgaggagttg 4740 acaaaaggcc gaaacaatga tctcatcgat ctttgtgaag gtgatccaga cctcatggca 4800 gagatttgtg acgagctttt ccgcaagcca gctagcggag aaacctcgat tttgcgggga 4860 aaggagaggg taaaactcga aatcctggaa gaagaagtcc gaggatacaa aaaagagcaa 4920 gagctcagga cccccctaca aaaactttct gagggtgcat caacatctta caaggcacca 4980 gaagaaagcg atgaagaaag agtcggagca ctcttagctg aaggagaatt ggagaaactc 5040 gctgccgttg caggagaatc ctattctcgc atgcctaaag gtggcctaaa caagctgtac 5100 cacttaaatg tgcagtttgt catccccaaa gctgagggtg gccacgttag cttcacagtc 5160 gcggccataa ttgacacagg atgcacctgt tgctgtataa acggcgcgaa agttccagaa 5220 gaagctcaag aggaagcctc atatgcaatg acgttcgcgg gcgtcaactc gagaggcaca 5280 accagaaaga agatgagggc gggaaaaatg gtcatcagtg ggaatgattt ctacaccccc 5340 tacatctcag tctttgacat ggatctccca gacattgaca tgctgatagg atgtaacttc 5400 atcaaggcaa tgcaaggagg gatcaggttc gaaggcactg aagtcaccat ctataagaag 5460 gtgaccacaa tccagacgac tctggagcct atcaaattgg gctatgcaga gttcgaccct 5520 gacatccagg tggagcttga aagggcttac tatgccgctc cagtgtcaga agcagagctg 5580 ataaagctca gggatcacag gctgctcgct gaattaaaag agcagggctt cataggcaac 5640 gacccaatgt tgcactgggc aaagaaccag gtcaagtgca agcttgacat catcaacccg 5700 gatatcacta tccagggcaa gccgcctagc acagccacac ctgagatcaa agaccgctac 5760 cagcgtcata ttgatgcact gctatccatc ggggtcatta gaccaagcaa aagcaggcat 5820 agaacagcgg cattcatcac ctattcgggc actagcgtgg acccgaagac tggggaagaa 5880 atcagaggca aagaaaggat ggtcttcgac tatcgcgctc tgaacaacaa cacgcacaag 5940 gaccagtaca cattgcctgg catcaactcg atcgtagcag ctgttggcaa cgccaaaatc 6000 tacagcaaat tcgacttgaa ggctggtttc catcaggtcc taatggaaga atcctctatc 6060 ccatggacag cgttcatcac gccagtagga ttctacgaat ggttggtaat gcctttcggt 6120 attgctaacg ctccagcggt tttccagagg aaaatggata actgcttcca caagctgaga 6180 gagttcgtcg cggtttatat cgacgacatc ctcgtcttca gcaattccct gcaggaacat 6240 gaaagccatt taaggcaaat gcttgaagtt tgcaggaaga atgggttggt gctgtcacca 6300 acaaaaatga aggttgctgt cacaacagtg gaattcctag gggccatcat cggcaatggg 6360 aaaatcaagt tgcagcctca catcgtcaag aagatctctg aagttgacga tgaatccctg 6420 agaaccctga aagggttaag aagctggttg ggcataatta actatgccag gaattacatt 6480 cctaactgtg ggaccttgct tggcccactt tacagcaaaa ctagcgaaaa tggggatcga 6540 agaatgagtc ctcaggactg gaagctggtc agaaaggtca aagagctcgt taaaagtctg 6600 ccagacttag agctgccacc agcaggagcc tatgtggtca tcgaaactga cggctgcatg 6660 gaaggatggg gaggagtgtg caaatggaag cacaagaaag gtgaatctgc ctcagcagag 6720 aaggtctgcg cctatgcaag tggcaaattc ccggctataa aatccaccat cgacgctgaa 6780 atgcatggag taatgaactc tctggaaaaa ttccagatct acttcatgga caaaggtgag 6840 gtcaccatca gaacagactg ccaggccata gtagcgttct acgaaaagct caacgctaac 6900 aaaccatcaa gggttcgctg gctcaacttc tgtgactaca tcaccaatac aggagtcaag 6960 gtcgtcttcg agcacatcaa agggaaggac aacgtcctag cagacacgct cagccgactc 7020 acacagacct tagctgcggt tcgggagatg cccgcagaac aggaagagat cctcagacaa 7080 gctctcaaca atactgaggt ccagcccaag gaacgaagga tcctcatgga tcacatctgt 7140 ggaatgctgg aagcccaggc ccaaaaggcc agtctccacc aacatgggct taacccatga 7200 tctatccaat agtagaagct gacgcaccgg atgacttcac cataaatgat tcgtcatcgc 7260 ttacgccatc agctctatta ttactttact tttgtaagtg cgccagtagt gcgctgagtc 7320 agggaatctt atcccttatg tcttttagcc acactttcgg tggtagtgga tgcttttagt 7380 acaagcatta ttgtaaaagc taagcttttg agctgtcgat ggggcccaat gagcacccga 7440 gcttcaaaac cttatcttct actccctata tatggagtct taggtagaag gaggaaatca 7500 tgaatcgaac gaatcgaaga gatcgaacaa aatagcttgt atcgaatagc ttattcttga 7560 ataaacaaat cttccgcaat actctgtttt ctttagttct ttactgttac ctagccagtc 7620 agtagagaag atccacgaaa atttttattt tccgggacca ttc 7663 //