ID HQ852250; SV 1; linear; genomic DNA; STD; VRL; 7649 BP. XX AC HQ852250; XX DT 11-MAY-2011 (Rel. 108, Created) DT 17-AUG-2011 (Rel. 109, Last updated, Version 2) XX DE Gooseberry vein banding virus isolate BC, complete genome. XX KW . XX OS Gooseberry vein banding associated virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7649 RX DOI; 10.1007/s11262-011-0614-8. RX PUBMED; 21533750. RA Xu D., Mock R., Kinard G., Li R.; RT "Molecular analysis of the complete genomic sequences of four isolates of RT Gooseberry vein banding associated virus"; RL Virus Genes 43(1):130-137(2011). XX RN [2] RP 1-7649 RA Xu D., Mock R.G., Kinard G.R., Li R.; RT ; RL Submitted (06-JAN-2011) to the INSDC. RL National Germplasm Resources Laboratory, USDA-ARS, 10300 Baltimore Ave., RL Beltsville, MD 20705, USA XX DR MD5; 77341e9d3c3c2729de59b26b98636828. XX FH Key Location/Qualifiers FH FT source 1..7649 FT /organism="Gooseberry vein banding associated virus" FT /host="Ribes nigrum" FT /isolate="BC" FT /mol_type="genomic DNA" FT /country="Canada" FT /db_xref="taxon:157270" FT CDS 393..1067 FT /codon_start=1 FT /product="unknown" FT /note="ORF 1" FT /db_xref="UniProtKB/TrEMBL:F5BDD6" FT /protein_id="AEE39274.1" FT /translation="MRKHTALEFEEKAEAWERTERAARHDFVFRNLKTYPRYDTNQRFP FT SCEIPCYHYNTGAGTKVCHATISKEGGNQHFVLNSLFDLEVTQIHNQAVIHDCLTQFVQ FT YSIYKRRKKLKKSRLPTIPEERPLATSEVSKVDPEQISQISSQLTAVKADLREIKSQQS FT QLKTGFNQLRDSIQELLSRESEPKPIEAATAEVADQLKKQLKEVKAVLEDTKKIVRSLT FT PE" FT CDS 1068..1511 FT /codon_start=1 FT /product="unknown" FT /note="ORF 2" FT /db_xref="UniProtKB/TrEMBL:F5BDD7" FT /protein_id="AEE39275.1" FT /translation="MSSWEDTSSKQIYKDALNATNTLYTNGIGEGFVKPAELTGGQVTV FT KAIRQNNTLIELVVGISAKLDNAAAQLRSLDRRISELETAIRAKEAVSLPESIIDDLTK FT EFAKLDAGTGRKAPKVGKKGKFFVWKDPKNDDQNPNRASTSRN" FT CDS 1468..7200 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF 3; contains MP/CP/aspartic protease/RTase/RNase FT H" FT /db_xref="GOA:F5BDD8" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:F5BDD8" FT /protein_id="AEE39276.1" FT /translation="MTTRTRTEQVPRATSTRPSSRGEASSTLDDQIRGYRQAARLRHNV FT RRRLRSLSPGGFRNTLEQQLSPDQELALSRRRRANLVPAEVLYTHNNNEVVNRVYQHYE FT ERSAHVVDRQMDLRFIEEESYRRLVDEGLQFIHLGMGMVRIHMLHRNSAGIEAMIVFRD FT TRWTDDRQVIASMSVDMTHGSQLVYVIPDAMLSIHDFYNHIQVSIQTRGYNGGWTGGDS FT NMIVTRSLIGRLTNQSTTNFGYQIQGVTDYLTSHGVSCIPGEQWSVTNRSGEWRLQQSS FT IAPPEQVPTEARLRPGPRGELSMRFTNFRDQTVRERASDEDTDSGRPETSGRDETTHYV FT GALRFDLKGRSKPREEECFEVAAPDVLQSWMQQLSRSPPRQIRYEGPEWDTLGEPSGKY FT DYKVRYSAPPPTPWPTKPTGWGDEEEDLPPPRFDSSSESFSGGGEIEPLEYHESSEDSY FT EEVRRRDIENHNSLIAEGFTQEPRFPGLYAPARVEVIEEDHYEGDASERSWSEEEPEFD FT YPQIAAVVNQNNEPELEYPTKKFQELMAKIKGFQNQKVEIAAMNAESSGSGVTSGNFVP FT PIATTGPSVYPPATGTHGTNIGPQDQGGWGGRMPRSRMPGGYGRPQRPWTLPSAQTENG FT VMLIIPEDLTLAADAINRWESITINVVSKLAFDNMQDKVDYVENLLGEREKEVWTTWRM FT KWEDEYRRMVAISDDTRNLTAAIKRVFGVHDPFTGSTFLQNQAYADLERLSCKRMEDVM FT PFLFTYYQLAAKSGRMWTNEELSDKLFRKLPEAVGPTIEKAYKERYPGLVIGVMARINF FT IIEYLQNVCKQAALQRSLKNLNFCRTMPVPGYYEKKKYGVRKSTTYKGKPHDTHVKVIK FT NKDKNAPGRKCKCYLCGIEGHYARECPKKTVQPQRMAYFEGLALADNWDVLSVDVGESD FT SEGVCSISEGETAGRMDELAAFKTQLPYPVEFEQGMFVLTIEQVTAPAVASGWRRRTEL FT RGDQMVCPHQWSDVAEVSLEDRFCSLCGDNTPVGRRVHCTTCKANLCPVCAWLEFGIRI FT VAAKTDATKWNYLNKDELIAQLYEHNAFLTHQNKALQARIEELTKGRNNDLIDLCEGDP FT DLMAEICDELFRKPASGETSILRGKERVKLEILEEEVRGYKEEQELRTPLQKLSEGAST FT SYKAPEESDEERVGALLAEGELEKLAAVAGESYSRMPKGGLNKLYHLNVQFVIPKAEGG FT HVSFTVAAIIDTGCTCCCINGAKVPEEAQEEASYAMTFAGVNSRGTTRKKMRAGKMVIS FT GNDFYTPYISVFDMDLPDIDMLIGCNFIKAMQGGIRFEGTEVTIYKKVTTIQTTLEPIK FT LGYAEFDPDIQVELERAYYAAPVSEAELIKLRDHRLLAELKEQGFIGNDPMLHWAKNQI FT KCKLDIINPDITIQGKPPSTATPEIKDRYQRHIDALLSIGVIRPSKSRHRTAAFITYSG FT TSVDPKTGEEIRGKERMVFDYRALNNNTHKDQYTLPGINSIVAAVGNAKIYSKFDLKAG FT FHQVLMEESSIPWTAFITPVGFYEWLVMPFGIANAPAVFQRKMDNCFHKLREFVAVYID FT DILVFSNSLQEHESHLRQMLEVCRKNGLVLSPTKMKVAVTTVEFLGAIIGNGKIKLQPH FT IVKKISEVDDESLRTLKGLRSWLGIINYARNYIPNCGTLLGPLYSKTSENGDRRMSPQD FT WKLVRKVKELVKSLPDLELPPAGAYVVIETDGCMEGWGGVCKWKHKKGESASAEKVCAY FT ASGKFPAIKSTIDAEMHGVMNSLEKFQIYFMDKGEVTIRTDCQAIVAFYEKLNANKPSR FT VRWLNFCDYITNTGVKVVFEHIKGKDNVLADTLSRLTQTLAAVREMPAEQEEILRQALN FT NTEVQPKERRILMDHICGMLEAQAQKASLHQHGLDP" XX SQ Sequence 7649 BP; 2265 A; 1841 C; 2020 G; 1523 T; 0 other; tggtatcaga gcttcggctc tacgttagtc ttcatggcta gtttctaaat tacctgagag 60 gttgtgccat aaagcctaac ccgaggttca aacccagctg aacgtcagac cttcggtctg 120 aggttgtggt gttttccgac gattgtcata gtccgaactc cggaaaagct ttctccttac 180 ggtattataa ggaggttgct gtttgaaacg ttaggagttg cagagttgca aaaggatcag 240 gcagcccgag agccgttagc cgtgggaggc gccgaggcga atagtggtgt ccctgatatg 300 agcaaggtga gcaacgagaa acgagtatct agagcagtag ccgacaccgg ccggagaata 360 gtaaagtaac gactcaagac gtgacagtct atatgcggaa acacacagcc ttagaatttg 420 aagagaaggc cgaagcttgg gagagaactg aaagggcggc gaggcacgac ttcgttttta 480 gaaacttgaa gacttacccc cggtacgata ccaaccagag gtttcccagt tgtgagatcc 540 cttgttatca ttacaatact ggcgcgggaa cgaaagtttg ccacgcaaca atctccaaag 600 aaggcggaaa ccagcacttt gtgcttaaca gtctgtttga cttagaagtc actcagatcc 660 ataaccaagc agtcatccac gactgtttga ctcagttcgt ccagtactcc atctacaaga 720 gaaggaagaa actcaagaag agtagactcc caacgatccc ggaggagcgg cctttggcta 780 cctctgaggt ctcgaaggta gatccggagc agatctccca gatctcatcg cagctcaccg 840 ctgtgaaggc agatctccga gagatcaaga gtcagcaatc ccagctcaag acgggattca 900 accagctgag agattccatt caggaattac tctccagaga atcggaaccc aaaccgattg 960 aagcagccac agctgaggtg gccgatcagc tcaagaagca gcttaaggaa gttaaggctg 1020 tgcttgagga caccaagaag atcgtcagat ctttgacccc ggagtagatg agcagctggg 1080 aagacacttc cagtaagcag atctacaagg acgcgttaaa cgcaacaaac acgctctaca 1140 ccaacggcat cggcgaggga ttcgtcaagc cagcagagct aacagggggt caggtcaccg 1200 taaaggcgat ccgacagaac aacacgctca tcgagctagt tgttgggata agtgcgaagc 1260 tagataacgc tgccgcacag ttaagaagcc tcgacaggag gatatcggag ctcgaaacag 1320 ccatccgggc aaaggaggct gtatccttgc ctgaaagcat catcgacgat ctcactaagg 1380 agttcgccaa acttgacgcc ggaacaggaa ggaaggctcc taaggtcggg aagaaaggca 1440 agttcttcgt gtggaaagac ccgaagaatg acgaccagaa cccgaacaga gcaagtacct 1500 cgcgcaacta gcacccgacc cagtagtcgt ggtgaggcgt cgtcaaccct agacgaccag 1560 atacgagggt acagacaggc cgccaggctt agacataacg tcaggcggag gttaaggagt 1620 ttatctcctg gtgggttcag gaacacgcta gagcagcagc ttagccctga tcaagagcta 1680 gcactaagca ggaggcgacg agcgaacctc gtgccagcag aagtgctcta cacccacaac 1740 aacaatgagg tagttaacag ggtctaccaa cactacgagg agcggagcgc gcacgtagtg 1800 gacagacaga tggaccttcg gttcatcgag gaagagtcct atcgcaggct agtcgatgag 1860 ggcttacagt tcattcacct tggcatgggg atggtaagga tccacatgtt gcacagaaac 1920 tcggccggga ttgaggccat gattgtcttc agagacacaa ggtggaccga cgacaggcag 1980 gtgatagcca gcatgtccgt cgacatgacg cacggatcac agttggtata tgtgattccg 2040 gatgcgatgc tctccatcca tgatttctac aatcatatcc aggtcagcat acagaccagg 2100 ggatacaatg gaggatggac gggtggtgac tctaacatga tagtcaccag gtcactgatt 2160 ggtaggttaa ccaaccagag cacgaccaat tttggttacc agatccaagg agtcacggac 2220 tacctcacaa gccatggagt ctcttgcatt ccaggagaac agtggagcgt aaccaacaga 2280 tcaggagagt ggcgattaca gcaatcatcc attgcgccac cggagcaggt ccctacggag 2340 gctaggctaa ggccaggacc tagaggtgaa ctcagcatga ggttcacgaa cttccgagac 2400 cagacggttc gggagagagc gtcggacgaa gataccgaca gtggtagacc agaaacaagt 2460 gggcgagatg aaacaacgca ctatgttggt gcgctgagat tcgatctcaa aggcaggtca 2520 aaaccacgag aagaggagtg cttcgaagta gcagctccag acgtgcttca aagctggatg 2580 caacagctat ccagaagtcc gccaaggcag attcgctacg aaggccctga atgggataca 2640 ctaggcgagc caagtggcaa gtatgactac aaggtcaggt actcagcacc accaccaaca 2700 ccgtggccaa ctaagccaac tggttggggg gatgaagaag aggatcttcc accaccaaga 2760 tttgactcat cgtcagaatc tttttcaggg gggggggaga tagaaccttt ggagtaccac 2820 gaaagtagcg aagacagcta tgaagaggtc agaaggcgtg atattgaaaa tcacaacagc 2880 ctcatagctg agggattcac ccaggaacct aggttcccag gcttatacgc gccagccagg 2940 gtagaagtga tcgaggaaga tcactatgaa ggcgacgcta gtgagcgaag ctggtctgag 3000 gaggagccgg aattcgacta tccccagata gcagcagtgg tgaaccaaaa caacgaaccc 3060 gaactggaat atccgacaaa gaaattccag gagcttatgg ctaaaatcaa ggggttccag 3120 aaccagaagg tggaaattgc cgccatgaac gctgagtcct cgggatcagg cgtaacatcg 3180 ggcaactttg tgccaccgat agcaaccact ggtccatcag tatacccgcc agctacggga 3240 acacacggca ctaacatcgg gccacaggac caaggaggtt ggggagggcg tatgcccaga 3300 agtagaatgc caggagggta tggtaggcct cagaggccat ggaccttgcc ttcagcgcag 3360 accgaaaacg gcgtcatgct gatcattccg gaggatttaa ccctcgcagc agatgctatc 3420 aacagatggg agtcaatcac catcaacgtc gtcagcaaac ttgccttcga caacatgcag 3480 gacaaagtcg actacgtcga aaacctgctg ggcgaacgag aaaaggaagt ttggaccact 3540 tggagaatga agtgggaaga cgagtaccgg cggatggttg ccatttcaga tgacaccaga 3600 aatctgaccg ccgcaatcaa aagggtgttt ggggtacatg acccattcac aggaagtacc 3660 ttcctacaaa accaggccta tgcggacttg gagaggttaa gctgcaaaag aatggaggac 3720 gtgatgccat ttctattcac gtactatcag ctggcagcga aatccggtag gatgtggaca 3780 aacgaggagc tctccgacaa gctgtttcgg aagctaccag aggcagtagg ccccacaata 3840 gagaaagcct acaaagagcg ctacccaggg ttagtaatcg gggtaatggc tcgaatcaac 3900 ttcataatcg agtacctgca aaacgtatgc aaacaagcag cattacagcg aagtctgaag 3960 aatctcaact tctgccgaac aatgccagtg ccagggtact acgagaagaa gaagtatgga 4020 gtgcgcaagt ccacaacgta caaaggtaaa ccacatgaca ctcatgtgaa ggttatcaag 4080 aacaaggaca agaacgcacc agggcgcaag tgtaaatgct acctttgcgg catagaaggc 4140 cattacgcaa gggaatgccc taagaagacg gtacagccac agaggatggc gtacttcgaa 4200 ggtctcgctc tcgcagataa ttgggatgtt ctctctgtag acgtcgggga aagcgacagc 4260 gaaggagtct gctccatttc tgaaggagag acagcaggca ggatggatga gctagcagcg 4320 ttcaaaactc agctccccta ccctgtagag ttcgaacaag gaatgttcgt tctcaccatt 4380 gagcaagtca ccgctcctgc agtagcctca ggatggcgca ggcgtacgga gctacgaggt 4440 gaccagatgg tgtgtccgca ccaatggagt gacgtcgccg aagtgtcact agaggacaga 4500 ttctgttctc tctgcggaga caatacgcca gtcggcagaa gggtacattg cacgacatgt 4560 aaggcaaacc tgtgcccagt ttgcgcttgg ttggagtttg gcatcagaat tgtagcagcc 4620 aaaaccgacg ccaccaagtg gaactacctg aataaggatg agttgatcgc tcagctgtac 4680 gagcacaacg cattccttac tcaccagaac aaagctctgc aagctagaat tgaggagttg 4740 acaaaaggcc gaaacaatga tctcatcgat ctttgtgaag gtgatccaga cctcatggca 4800 gagatttgtg acgagctttt ccgcaagcca gctagcggag aaacctcgat tttgcggggg 4860 aaggagaggg taaaactcga aatcctggaa gaagaagtcc gaggatacaa agaagagcaa 4920 gagctcagga cccccctaca aaaactttct gagggtgcat caacatctta caaggcacca 4980 gaagaaagcg atgaggaaag agtcggagca ctcttagctg aaggagaatt agagaaactc 5040 gctgccgttg caggagaatc ctattctcgc atgcctaaag gtggcctaaa caagctgtac 5100 cacttaaatg tgcagtttgt catccccaaa gctgagggtg gtcacgttag cttcacagtc 5160 gcggccataa ttgatacagg gtgcacctgt tgctgtataa acggcgcgaa agttccagaa 5220 gaagctcaag aggaagcctc atatgcaatg acgttcgcgg gcgtcaactc gagaggcaca 5280 accagaaaga agatgagggc gggaaaaatg gtcatcagtg ggaatgattt ctacaccccc 5340 tacatctccg tctttgacat ggatctccca gacattgaca tgctgatagg atgtaacttc 5400 atcaaagcaa tgcaaggagg gatcaggttc gaaggcactg aagtcaccat ctacaagaag 5460 gtgaccacaa tccagacgac tctggagcct atcaaattgg gctatgcaga gttcgaccct 5520 gacatccagg tggagctaga aagggcttac tacgccgctc cagtgtcaga agcagagcta 5580 atcaagctca gggatcacag gctgctcgct gaattaaagg agcagggctt cataggcaac 5640 gacccaatgt tgcactgggc aaagaaccag atcaagtgca agcttgacat catcaacccg 5700 gatatcacta tccagggtaa accgcccagc acagccacac ctgagatcaa agaccgctac 5760 cagcgtcaca tagatgcact gctatccatt ggggtcatcc gaccaagcaa aagcaggcat 5820 agaacagcgg cattcatcac ctactcgggc actagcgtgg acccgaagac aggggaagaa 5880 atcagaggca aagaaaggat ggtcttcgac tatcgcgctc tgaacaacaa cacgcacaag 5940 gaccagtaca cattgcctgg catcaactcg attgtagcag ctgttggcaa cgccaaaatc 6000 tacagcaagt tcgacttgaa ggctggtttc catcaggtcc taatggaaga atcctccatc 6060 ccttggacag cgttcatcac gccagtagga ttctacgaat ggttggtaat gcctttcggt 6120 attgctaacg ctccagcggt tttccagagg aaaatggata actgcttcca caagctgaga 6180 gagttcgtcg cggtttacat cgacgacatc ctcgtcttca gcaattccct gcaggaacat 6240 gagagccatt tacggcaaat gctggaagtt tgcaggaaga atgggttggt gctgtcacca 6300 acaaaaatga aggttgctgt cacaacagtg gaattcctag gggccatcat cggcaatggg 6360 aaaatcaagt tgcagcctca catcgtcaag aagatttccg aagttgacga tgaatccctg 6420 agaaccctga aagggttaag gagctggttg ggcataatta actatgccag gaattacatt 6480 cctaactgtg ggaccctgct tggcccactt tacagcaaaa ctagcgaaaa tggggatcga 6540 agaatgagtc ctcaggactg gaagctggtc aggaaggtca aagagctcgt caaaagtctg 6600 ccagacttag agctaccacc agcaggagcc tatgtggtca tcgaaacaga cggctgcatg 6660 gaaggatggg gaggagtgtg caaatggaag cacaagaaag gagaatctgc ctcagcagag 6720 aaagtctgcg catatgcaag cggcaaattc ccggctatca aatccaccat cgatgctgag 6780 atgcatggag taatgaactc cctggagaaa ttccagattt acttcatgga caaaggtgag 6840 gtcaccatca gaacagactg ccaggccata gtagcgttct acgaaaagct caacgctaac 6900 aaaccatcaa gggttcgctg gctcaacttc tgtgactaca tcaccaatac aggagtcaag 6960 gtcgtcttcg agcacatcaa agggaaggac aacgtcctag cagacacgct cagccgactc 7020 acacagacct tagctgcggt tcgggagatg cccgcagaac aggaagagat cctcagacag 7080 gctctcaaca atactgaggt ccagcccaag gaacgaagga tcctcatgga tcacatctgt 7140 ggaatgctgg aagcccaggc ccaaaaggcc agtctccacc aacatgggct tgacccatga 7200 tctatctgat aatggaagct gacgcaccgg atgacttcac cataaatgat tcgtcaccgc 7260 ttacgccatc agctctatta ttattttact tttgtaagtg cgcctgtagt gcgctgagtc 7320 agggaatctt atcccttatg tcctttagcc acactttcgg tggtagtgga tgcttttagt 7380 acaagcatta ttgtaaaagc taagcttttg agctgtcgat ggggcccaat gagcacccga 7440 gcttcaaaac cttatcttct actccctata tatggagtct taggtagatc gaaaataatc 7500 atcgaatagc tttcatcgaa tatctttcct tgtaagcatt attcctcaat aaacaaatct 7560 tccgcaatac tctgtttcct tagttcttta ctgttaccta gccagtcagt agagaagatc 7620 cacgaaaatt ttattttccg ggaccattc 7649 //