ID HQ852249; SV 1; linear; genomic DNA; STD; VRL; 7660 BP. XX AC HQ852249; XX DT 11-MAY-2011 (Rel. 108, Created) DT 17-AUG-2011 (Rel. 109, Last updated, Version 2) XX DE Gooseberry vein banding virus isolate RC, complete genome. XX KW . XX OS Gooseberry vein banding associated virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7660 RX DOI; 10.1007/s11262-011-0614-8. RX PUBMED; 21533750. RA Xu D., Mock R., Kinard G., Li R.; RT "Molecular analysis of the complete genomic sequences of four isolates of RT Gooseberry vein banding associated virus"; RL Virus Genes 43(1):130-137(2011). XX RN [2] RP 1-7660 RA Xu D., Mock R.G., Kinard G.R., Li R.; RT ; RL Submitted (06-JAN-2011) to the INSDC. RL National Germplasm Resources Laboratory, USDA-ARS, 10300 Baltimore Ave., RL Beltsville, MD 20705, USA XX DR MD5; 03ad09ad406682132996cf723aa1f3fc. XX FH Key Location/Qualifiers FH FT source 1..7660 FT /organism="Gooseberry vein banding associated virus" FT /host="Ribes rubrum cv. Augustus" FT /isolate="RC" FT /mol_type="genomic DNA" FT /country="Netherlands" FT /db_xref="taxon:157270" FT CDS 394..1068 FT /codon_start=1 FT /product="unknown" FT /note="ORF 1" FT /db_xref="UniProtKB/TrEMBL:F5BDD0" FT /protein_id="AEE39271.1" FT /translation="MRKHTALEFEEKAEAWERTERAARHDFVFRNLKTYPRYDTNQRFP FT SCEIPCYHYNTGAGTKVCHATISKEGGNQHFVLNSLFDLEVTQIHNQAVIHDCLTQFIQ FT YSIYKRRKKLKKSRLPTIPEERPLATSEVSKVDPEQISQISSQLTAVKADLREIKSQQS FT QLKTGFNQLRDSIQELLSRESEPKPIEAATAEVADQLKKQLKEVKAVLEDTKKIVRSLT FT PE" FT CDS 1069..1512 FT /codon_start=1 FT /product="unknown" FT /note="ORF 2" FT /db_xref="UniProtKB/TrEMBL:F5BDD4" FT /protein_id="AEE39272.1" FT /translation="MSSWEDTSSKQIYKDAVTATNTLYINGIGEGFVRPAELTGGQVTV FT KAIRQNNTLIELVVGISAKLDNAAAQLRSLDRRISELETAIQAKEAVSLPEGIVDDLTK FT EFAKLDAGTGRKAPKIGKKGRFFVWKDPKNDDQNPNRASTSRN" FT CDS 1469..7201 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF 3; contains MP/CP/aspartic protease/RTase/RNase FT H" FT /db_xref="GOA:F5BDD5" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:F5BDD5" FT /protein_id="AEE39273.1" FT /translation="MTTRTRTEQVPRATSTRPGSRGEASSTLDDQIRGYRQTARLRHNV FT RRRLRSLSPGGFRNTLEQQLSPDQELALSRRRRANLVPAEVLYTHNNNEVVNRVYQHYE FT ERSAHVVDRQMDLRFIEEESYRRLVDEGLQFIHLGMGMVRIHMLHRNSAGIEAMIVFRD FT TRWTDDRQVIASMSVDMTHGSQLVYVIPDAMLSIHDFYNHIQVSIQTRGYNGGWTGGDS FT NMIVTRSLIGRLTNQSTTNFGYQIQGVTDYLTSHGVSCIPGEQWSVTNRSGEWRLQQSS FT IAPPEQVPTEARLRPGPRGELSMRFTNFRDQTIRERTSDEDTDSGRPETSGRDETTHYV FT GALRFDLKGRSKPREEECFEVAAPDVLQSWMQQLSRSPPRQNRYEGPEWDTLGEPSGKY FT DYKVRYSAPPPTPWPTKPTGWGDEKEDLPPPRFDSSSESFSGGGEIEPLEYHESSEDSY FT EEVRRRDIEKHNNLIAEGFTQEPRFPGLYAPARVEVIEEDHYEGDASEQNWSEEEPEFD FT YPQIAAVVNQNNEPELEYPTKKFQELMAKIKGFQNQKVEIAAMNAESSGSGVTSGNFVP FT PIATTGPSVYPPATGTHGTNIGPQDQGGWGGRMPRSRMPGGYGRPQRPWTLPSAQTENG FT VMLIIPEDLTLAADAINRWESITINVVSKLAFDNMQDKVDYVENLLGEREKEVWTTWRM FT KWEDEYRRMVAISDDTRNLTAAIKRVFGVHDPFTGSTFLQNQAYADLERLSCKRMEDVM FT PFLFTYYQLAAKSGRMWTNEELSDKLFRKLPEAVGPTIEKAYKERYPGLVIGVMARINF FT IIEYLQNVCKQAALQRSLKNLNFCRTMPVPGYYEKKKYGVRKSTTYKGKPHDTHVKVIK FT NKDKNAPGRKCKCYLCGIEGHYARECPKKTVQPQRMAYFEGLALADNWDVLSVDVGESD FT SEGVCSISEGETAGRMDELAAFKTQLPYPVEFEQGMFVLTIEQVTAPAVASGWRRRTEL FT RGDQKVCPHQWSDVAEVSLEDRFCSLCGDNTPVGRRVHCTTCKANLCPVCAWLEFGIRI FT VAAKTDATKWNYLNKDELIAQLYEHNAFLTHQNKALQGRIEELTKGRNNDLIDLCEGDP FT DLMAEICDELFRKPASGETSILRGKERVKLEILEEEVRGYKEELELRTPLQKLSEGAST FT SYKAPEESDEERVGALLAEGELEKLAAVAGESYSRMPKGGLNKLYHLNVQFVIPKAEGG FT HVSFTVAAIIDTGCTCCCINGAKVPEEAQEEASYAMTFAGVNSRGTTRKKMRAGKMVIS FT GNDFYTPYISVFDMDLPDIDMLIGCNFIKAMQGGIRFEGTEVTIYKKVTTIQTTLEPIK FT LGYAEFDPDIQVELERAYYAAPVSEAELIKLRDHRLLAELKEQGFIGNDPMLHWAKNQV FT KCKLDIINPDITIQGKPPSTATPEIKDRYQRHIDALLSIGVIRPSKSRHRTAAFITYSG FT TSVDPKTGEEIRGKERMVFDYRALNNNTHKDQYTLPGINSIVAAVGNAKIYSKFDLKAG FT FHQVLMEESSIPWTAFITPVGFYEWLVMPFGIANAPAVFQRKMDNCFHKLREFVAVYID FT DILVFSNSLQEHESHLRQMLEVCRKNGLVLSPTKMKVAVTTVEFLGAIIGNGKIKLQPH FT IVKKISEVDDESLRTLKGLRSWLGIINYARNYIPNCGTLLGPLYSKTSENGDRRMSPQD FT WKLVRKVKELVKSLPDLELPPAGAYVVIETDGCMEGWGGVCKWKHKKGESASAEKVCAY FT ASGKFPAIKSTIDAEMHGVMNSLEKFQIYFMDKGEVTIRTDCQAIVAFYEKLNANKPSR FT VRWLNFCDYITNTGVKVVFEHIKGKDNVLADTLSRLTQTLAAVREMPAEQEEILRQALN FT NTEVQPKERRILMDHICGMLEAQAQKASLHQHGLDP" XX SQ Sequence 7660 BP; 2295 A; 1833 C; 2003 G; 1529 T; 0 other; tggtatcaga gcttcggctc tacgttagtc ttcatggcta atttctaatt tacctgtgag 60 gttgtgccat aaagcctaac ccgaggttca aacccagcgg aacgtcagac cttcggtctg 120 aggttgtagt gttttccgac gaattgtcat agtccgaact ccggaaaagc tttctcctta 180 cggtatcata aggaggttgc tgtttgaaac gttaggagtt gcagagttgc aaaaggatca 240 ggcagcccga gagccgttag ccgagggagg cgccaaggcg aatagtggtg tccctgatat 300 gagcaaggtg agcaacaaga aacgagtatc tagagcagta gccaacaccg gccggagaat 360 agtaaagtaa cgactcaaga cgtgacagtc tatatgcgga aacacacagc cttagaattt 420 gaagagaagg ctgaagcttg ggagagaact gaaagggcgg cgaggcacga cttcgttttt 480 agaaacttga agacttaccc ccggtacgat accaaccaga ggtttcccag ttgtgagatc 540 ccttgttatc attacaatac tggcgcggga acgaaagttt gccacgcaac aatctccaaa 600 gaaggcggaa accagcactt tgtgcttaac agtctgtttg acttagaagt cactcagatc 660 cataaccaag cagtcatcca cgactgtttg actcagttca tccagtactc catctacaag 720 agaaggaaga aactcaagaa gagtagactt ccaacgatcc cggaggagcg gcctttggct 780 acctctgagg tctcgaaggt agatccggag cagatctccc agatctcatc gcagctcacc 840 gctgtgaagg cagatcttcg agagatcaag agtcagcaat cccagctcaa gacgggattc 900 aaccagctga gagattccat ccaggaatta ctctccagag aatcggaacc aaaaccgatt 960 gaagcagcca cagctgaggt ggccgaccaa ctcaagaagc agcttaagga agttaaggct 1020 gtgcttgagg atacaaaaaa gatcgtccgg tctttgaccc cggagtagat gagtagctgg 1080 gaagacactt ccagtaagca gatctacaag gacgcggtaa ccgcaacaaa cacgctctac 1140 atcaacggca tcggcgaagg gttcgtcagg ccagcagagt taacaggggg tcaggtcacc 1200 gtaaaggcga tccgacagaa caacacgctc atcgagctag ttgttgggat aagtgcgaag 1260 ctagacaacg ctgccgcaca actaagaagc ctcgacagga ggatatcgga gctcgaaaca 1320 gccatccagg caaaggaggc tgtatccttg ccagaaggta tcgtcgacga tctcactaag 1380 gagttcgcca aactagacgc cggaacagga aggaaggctc ctaagatcgg gaagaaaggc 1440 aggttcttcg tgtggaaaga cccgaagaat gacgaccaga acccgaacag agcaagtacc 1500 tcgcgcaact agcacccgac ctggtagtcg cggtgaggcg tcgtcaactc tagacgacca 1560 gatacgaggg tacagacaga ccgccagact aagacacaat gtcaggcgaa gactaaggag 1620 tttatctcct ggtgggttca ggaacacgct agagcagcag cttagccctg atcaagagct 1680 agcactaagt aggaggagac gagcgaacct cgtgccagca gaagtgctct acacccacaa 1740 caacaatgag gtagttaaca gagtctacca acactacgag gagcggagcg cgcacgtagt 1800 ggacagacag atggaccttc ggttcatcga ggaggagtcc tatcgcaggc tagtcgatga 1860 gggcttacag ttcattcacc ttggcatggg gatggtaagg atccacatgt tgcacagaaa 1920 ctcggccggg attgaggcca tgatagtctt cagagacaca aggtggaccg acgacaggca 1980 ggtgatagcc agcatgtccg tcgatatgac acacggatca cagttggtat atgtgattcc 2040 ggatgcaatg ctctccatcc atgatttcta caatcatatc caggtcagca tacagaccag 2100 gggatacaat ggaggatgga cgggtggtga ctcaaacatg atagtcacca ggtcactgat 2160 tggtaggtta accaaccaga gtacgaccaa ttttggttac cagatccaag gagtcacgga 2220 ctacctcaca agccatggag tctcttgcat tccaggagaa caatggagtg taaccaacag 2280 atcaggagag tggcggttac agcaatcatc cattgcgcca ccggagcagg tccctacgga 2340 ggctaggcta aggccaggac ctagaggtga actcagcatg aggttcacga acttccgaga 2400 tcagacgatt cgggagagaa cgtcggatga agataccgac agtggtaggc cagaaacaag 2460 tgggcgagat gaaacaacgc actatgttgg tgcgctgaga ttcgatctca aaggcaggtc 2520 aaaaccacga gaagaggagt gcttcgaagt agcagctcca gacgtgcttc aaagctggat 2580 gcaacagcta tccagaagtc cgccaaggca gaatcgctac gaaggtcctg aatgggatac 2640 actgggcgag ccaagtggca agtatgacta caaggtcagg tactcagcac caccaccaac 2700 accgtggcca actaagccaa ctggttgggg ggacgaaaaa gaagatcttc caccaccaag 2760 atttgactca tcgtcagaat ctttttcagg ggggggggag atagaacctt tggagtacca 2820 cgaaagcagc gaagacagct atgaagaggt cagaagacgt gatatagaaa aacacaacaa 2880 cctcatagct gagggattca cccaggaacc taggttccca ggcttatatg cgccagccag 2940 ggtagaagtg atcgaggaag atcactatga aggcgacgct agtgagcaaa actggtctga 3000 ggaggaaccg gaattcgact atccccagat agcagcagtg gtgaaccaaa acaacgaacc 3060 cgaactggaa tatccgacaa aaaaattcca ggagcttatg gctaaaatca aagggttcca 3120 gaaccagaag gtggagattg ccgccatgaa cgctgagtcc tcgggatcag gcgtaacatc 3180 gggcaacttc gtgccgccaa tagcaaccac tggtccatca gtatacccgc cagctacggg 3240 aacacacggc actaacatcg ggccacagga ccaaggaggt tggggagggc gtatgcccag 3300 aagtagaatg ccaggagggt atggtaggcc tcagaggcca tggaccttgc cttcagcgca 3360 gaccgagaac ggcgtcatgc tgatcattcc ggaggattta accctcgcag cagatgctat 3420 caacagatgg gagtcaatca ccatcaacgt cgtcagcaaa cttgccttcg acaacatgca 3480 ggacaaagtc gactacgtcg aaaacctgct gggcgaacga gaaaaggaag tttggaccac 3540 ttggagaatg aagtgggaag acgaataccg gcggatggtt gccatttcag atgacaccag 3600 aaacctaacc gccgcaatca aaagggtgtt tggggtacat gacccattca caggaagtac 3660 cttcctacaa aaccaggcct atgcggacct agagaggttg agctgcaaaa gaatggagga 3720 cgtaatgcca ttcttattca cgtactatca gctggcagca aaatccggta ggatgtggac 3780 aaacgaggag ctctccgaca agctgtttcg gaagctacca gaggcagtag gccccacaat 3840 agagaaagcc tacaaagagc gctacccagg gttagtaatc ggggtaatgg ctcgaatcaa 3900 cttcataatc gagtacctac agaacgtgtg caaacaagca gcattgcagc ggagtttgaa 3960 gaatctcaac ttctgccgaa caatgccagt gccagggtac tacgagaaga agaaatatgg 4020 agtgcgcaag tccacaacgt acaaaggtaa accacatgac actcatgtga aggttatcaa 4080 gaacaaggac aagaatgcac cagggcgcaa gtgtaaatgc tacctttgcg gcatagaagg 4140 ccattacgca agggaatgcc ctaagaaaac agtacagcca cagaggatgg cgtacttcga 4200 aggtctcgct ctcgcagata attgggacgt tctctctgta gacgtcgggg aaagcgacag 4260 cgaaggagtc tgctccattt ctgaaggaga gacagcaggc aggatggatg agctagcagc 4320 gttcaaaact cagctcccct accctgtaga gttcgaacag ggcatgttcg ttctcaccat 4380 tgagcaggtc accgctcctg cagtagcctc aggatggcgc aggcgtacag aactacgagg 4440 tgaccagaag gtgtgtccgc accaatggag tgacgtcgcc gaggtgtcac tagaggacag 4500 attctgttct ctctgcggag acaatacgcc agtcggcaga agggtacatt gcacgacatg 4560 taaggcgaac ctgtgcccag tatgcgcttg gttggagttt ggcatcagaa ttgtagcagc 4620 caaaactgac gccaccaagt ggaactacct gaataaggat gagttgatcg ctcagctgta 4680 cgagcacaac gcattcctta ctcaccagaa caaagctctg caaggtagaa ttgaggaatt 4740 aacaaaaggc cgaaacaatg atctcatcga tctttgtgaa ggtgatccag acctcatggc 4800 agagatttgc gacgagcttt tccgcaagcc agctagcgga gaaacctcga ttttgcgggg 4860 gaaggagagg gtaaaactcg aaatcctgga agaagaagtc cgaggataca aagaggagct 4920 agagctcagg acccccctac aaaaactttc cgagggtgca tcaacatctt acaaggcacc 4980 agaagaaagc gatgaggaaa gagtcggagc actcttagct gaaggagaat tagagaaact 5040 cgctgccgtt gcaggagaat cctattctcg catgcctaaa ggtggcctaa acaaactata 5100 ccacttaaat gtgcagtttg tcatccccaa agctgagggt ggtcacgtta gcttcacagt 5160 cgcggccata attgatacag ggtgcacctg ttgctgtata aacggcgcga aagttccaga 5220 agaagctcaa gaagaagcct catatgcaat gacgttcgcg ggcgtcaact cgagaggcac 5280 aacaagaaaa aagatgaggg cgggaaaaat ggtcatcagt gggaatgatt tctacacccc 5340 ctacatctcg gtctttgaca tggatctccc agacatcgat atgctgatag gatgtaactt 5400 catcaaagcc atgcaaggag ggatcaggtt cgaaggcacc gaagtcacca tctacaagaa 5460 ggtgaccaca atccagacga ctctggagcc tatcaaattg ggctatgcag agttcgaccc 5520 tgacatccag gtggagcttg aaagggctta ctatgccgct ccagtgtcag aagcagagct 5580 gataaagctc agggatcaca ggctgctcgc tgaattaaaa gagcagggct tcataggcaa 5640 cgacccaatg ttgcactggg caaagaatca ggtcaagtgc aagcttgaca tcatcaaccc 5700 ggatatcacc atccagggca agccgcctag cacagccaca cctgagatca aagaccgcta 5760 ccagcgtcac atagatgcac tgctatccat tggggtcatc cgaccaagca aaagcaggca 5820 ccgaacagcg gcattcatca cctattcggg cactagcgtg gacccgaaga ctggggaaga 5880 aatcagaggc aaagaaagga tggtcttcga ctatcgcgcc ctgaacaaca acacgcacaa 5940 ggaccagtac acattgcctg gcatcaactc gattgtagca gctgttggca acgccaaaat 6000 ctacagcaag ttcgacttga aggctggttt tcatcaggtc ctaatggaag aatcctccat 6060 cccttggaca gcgttcatca cgccagtagg attctacgaa tggttggtaa tgcctttcgg 6120 tattgctaac gctccagcgg ttttccaaag gaaaatggat aactgcttcc acaagctgag 6180 agagttcgtc gcggtctaca tcgacgacat cctcgtcttc agcaattccc tgcaagaaca 6240 tgaaagccat ttacggcaaa tgctcgaggt ttgcaggaag aatgggttgg tgctatcacc 6300 aacgaaaatg aaggttgctg tcacaacagt ggaattccta ggggccatca tcggcaatgg 6360 gaaaatcaag ttgcagcctc acatcgtcaa gaagatttct gaagttgacg atgaatccct 6420 gagaaccctg aaagggttaa gaagctggtt gggcataatt aactatgcca ggaattacat 6480 tcctaactgt ggaaccttgc ttggcccact ttacagcaaa actagcgaaa atggggatcg 6540 aagaatgagt cctcaggact ggaagctggt caggaaagtc aaagagctcg ttaaaagtct 6600 gccagacttg gagctaccac cagcaggagc ctatgtggtc atcgaaacag acggctgcat 6660 ggaaggatgg ggaggagtgt gcaaatggaa gcacaagaaa ggagaatctg cctcagcaga 6720 gaaagtctgc gcatatgcaa gcggcaaatt cccggctatc aaatccacca tcgatgctga 6780 gatgcatgga gtaatgaact ccctggagaa attccagatc tatttcatgg acaaaggtga 6840 ggtcaccatc agaacagact gccaggccat agtagcgttc tacgaaaagc tcaacgctaa 6900 taaaccttca agggttcgct ggcttaactt ctgtgactac atcaccaata caggagtcaa 6960 ggtcgtcttc gagcacatca aagggaagga caacgtccta gcagacacgc tcagccgact 7020 cacacagacc ttagctgcgg ttcgggagat gcccgcagaa caggaagaga tcctcagaca 7080 ggctctcaac aatactgagg tccagcccaa ggaacgaagg atcctcatgg atcacatctg 7140 tggaatgctg gaagcccagg cccaaaaggc cagtctccac caacatgggc ttgacccatg 7200 acctatccga taatggaagc tgacgcaccg gatgacttca ccataaatga ttcgtcatca 7260 attacgccat cagctctgtt attactttac ttttgtaagt gcgcctgtag tgcgctgagt 7320 cagggaatct tatcccttat gtcttttagc cacactttcg gtggtagtgg atgctttgag 7380 tacaagcatt attgtaaaag ctaagctttt gagctgtcga tggggcccaa tgagcacccg 7440 agcttcaaaa ccttatcttc tactccctat atatggagtc ttaggtagac taagaggggc 7500 atcgaatagc tttcatcgaa tgtctttccc ttccttgtaa gcattattcc tcaataaaca 7560 aatcttccgc aatactctgt ttcctttctt tagttcttta ctgttaccta gccagtcagt 7620 agagaagatc caggaaaatt ttatttttcc gggaccattc 7660 //