ID HQ852248; SV 1; linear; genomic DNA; STD; VRL; 7652 BP. XX AC HQ852248; XX DT 11-MAY-2011 (Rel. 108, Created) DT 17-AUG-2011 (Rel. 109, Last updated, Version 2) XX DE Gooseberry vein banding virus isolate GB1, complete genome. XX KW . XX OS Gooseberry vein banding associated virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7652 RX DOI; 10.1007/s11262-011-0614-8. RX PUBMED; 21533750. RA Xu D., Mock R., Kinard G., Li R.; RT "Molecular analysis of the complete genomic sequences of four isolates of RT Gooseberry vein banding associated virus"; RL Virus Genes 43(1):130-137(2011). XX RN [2] RP 1-7652 RA Xu D., Mock R.G., Kinard G.R., Li R.; RT ; RL Submitted (06-JAN-2011) to the INSDC. RL National Germplasm Resources Laboratory, USDA-ARS, 10300 Baltimore Ave., RL Beltsville, MD 20705, USA XX DR MD5; 57746d2620883d2cac331cbebf3de638. DR EuropePMC; PMC6355771; 30729184. XX FH Key Location/Qualifiers FH FT source 1..7652 FT /organism="Gooseberry vein banding associated virus" FT /host="Ribes uva-crispa cv. Weisse Neckartal" FT /isolate="GB1" FT /mol_type="genomic DNA" FT /country="United Kingdom" FT /db_xref="taxon:157270" FT CDS 393..1067 FT /codon_start=1 FT /product="unknown" FT /note="ORF 1" FT /db_xref="UniProtKB/TrEMBL:F5BDD0" FT /protein_id="AEE39268.1" FT /translation="MRKHTALEFEEKAEAWERTERAARHDFVFRNLKTYPRYDTNQRFP FT SCEIPCYHYNTGAGTKVCHATISKEGGNQHFVLNSLFDLEVTQIHNQAVIHDCLTQFIQ FT YSIYKRRKKLKKSRLPTIPEERPLATSEVSKVDPEQISQISSQLTAVKADLREIKSQQS FT QLKTGFNQLRDSIQELLSRESEPKPIEAATAEVADQLKKQLKEVKAVLEDTKKIVRSLT FT PE" FT CDS 1068..1511 FT /codon_start=1 FT /product="unknown" FT /note="ORF 2" FT /db_xref="UniProtKB/TrEMBL:F5BDD1" FT /protein_id="AEE39269.1" FT /translation="MSSWEDTSSKQIYKDAVTATNTLYTNGIGEGFVRPAELTGGQVTV FT KAIRQNNTLIELVVGISARLDNAAAQLRSLDRRISELETAIQAKEAVSLPESIVDDLTK FT EFAKLDAGTGRKAPKIGKKGKFFVWKDPKNDDQNPNRASTSRN" FT CDS 1468..7200 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF 3; contains MP/CP/aspartic protease/RTase/RNase FT H" FT /db_xref="GOA:F5BDD2" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:F5BDD2" FT /protein_id="AEE39270.1" FT /translation="MTTRTRTEQVPRATSTRPSSRGEASSTLDDQIRGYRQTARLRHNV FT RRRLRSLSPGGFRNTLEQQLSPDQELALSRSRRANLVPAEVLYTHNNNEVVNRVYQHYE FT ERSAHVVDRQMDLRFIEEESYRRLVDEGLQFIHLGMGMVRIHMLHRNSAGIEAMIVFRD FT TRWTDDRQVIASMSVDMTHGSQLVYVIPDAMLSIHDFYNHIQVSIQTRGYNGGWTGGDS FT NMIVTRSLIGRLTNQSMTNFGYQIQGVTDYLTSHGVSCIPGEQWSVTNRSGEWRLQQSS FT IAPPEQVPTEARLRPGPRGELSMRFTNFRDQAIRERASDEDTDSGRPETSGRDETTHYV FT GALRFDLKGRSKPREEECFEVAAPDVLQSWMQQLSRSPPRQNRYEGPEWDTLGEPSGKY FT DYKVRYSAPPPTPWPTKPTGWGDEEEDLPPPRFDSSSESFSGGGEIEPLEYHESSEDSY FT EEVRRRDTENHNNLIAEGFTQEPRFPGLYAPARIEVIEEDHYEGDASEQSWSEEEPEFD FT YPQIAAVVNQNNEPELEYPTKKFQELMAKIKGFQNQKVEIAAMNAESSGSGVTSGNFVP FT PIATTGPSAYPPATGTHGTNIGPQDQGGWGGRMPRSRMPGGYGRPQRPWTLPSAQTENG FT VMLIIPEDLTLAADAINRWESITINVVSKLAFDNMQDKVDYVENLLGEREKEVWTTWRM FT KWEDEYRRMVAISDDTRNLTAAIKRVFGVHDPFTGSTFLQNQAYADLERLSCKRMEDVM FT PFLFTYYQLAAKSGRMWTNEELSDKLFRKLPEAVGPTIEKAYKERYPGLVIGVMARINF FT IIEYLQNVCKQAALQRSLKNLNFCRTMPVPGYYEKKKYGVRKSTTYKGKPHDTHVKVIK FT NKDKNAPGRKCKCYLCGIEGHYARECPKKTVQPQRMAYFEGLALADNWDVLSVDVGESD FT SEGVCSISEGETAGRMDELAAFKTQLPYPVEFEHGMFVLTIEQVTAPAVASGWRRRTEL FT RGDQKVCPHQWSDVAEVSLEDRFCSLCGDNTPVGRRVHCTTCKANLCPVCAWLEFGIKI FT VAAKTDATKWNYLNKDELIAQLYEHNAFLTHQNKALQARIEELTKGRNNDLIDLCEGDP FT DLMAEICDELFRKPASGETSILRGKERVKLEILEEEVRGYREEQELRTPLQKLSEGAST FT SYKAPEESDEERVGALLAEGELEKLAAVAGESYSRMPKGGLNKLYHLNVQFVIPKAEGG FT HISFTVAAIIDTGCTCCCINGAKVPKEAQEEASYAMTFAGVNSRGTTRKKMRAGKMVIS FT GNDFYTPYISVFDMDLPDIDMLIGCNFIKAMQGGIRFEGTEVTIYKKVTTIQTTLEPIK FT LGYAEFDPDIQVELERAYYAAPVSEAELIKLRDHRLLAELKEQGFIGNDPMLHWAKNQV FT KCKLDIINPDITIQGKPPSTATPEIKDRYQRHIDALLSIGVIRPSKSRHRTAAFITYSG FT TSVDPKTGEEIRGKERMVFDYRALNNNTHKDQYTLPGINSIVAAVGNAKIYSKFDLKAG FT FHQVLMEESSIPWTAFITPVGFYEWLVMPFGIANAPAVFQRKMDNCFHKLREFVAVYID FT DILVFSNSLQEHESHLRQMLEVCRKNGLVLSPTKMKVAVTTVEFLGAIIGNGKIKLQPH FT IVKKISEVDDESLRTLKGLRSWLGIINYARNYIPNCGTLLGPLYSKTSENGDRRMSPQD FT WKLVRKVKELVKSLPDLELPPAGAYVVIETDGCMEGWGGVCKWKHRKGESASAEKVCAY FT ASGKFPAIKSTIDAEMHGVMNSLEKFQIYFMDKGEVTIRTDCQAIVAFYEKLNANKPSR FT VRWLNFCDYITNTGVKVVFEHIKGKDNVLADTLSRLTQTLAAVREMPAEQEEILRQALN FT NTEVQPKERRILMDHICGMLEAQAQKASLHQHGLSP" XX SQ Sequence 7652 BP; 2277 A; 1843 C; 2017 G; 1515 T; 0 other; tggtatcaga gcttcggctc tacgttagtc ttcatggcta gtttctaatt tacctgtgag 60 gttgtgccat aaagcctaac ccgaggttca aacccagctg aacgtcagac cttcggtctg 120 aggttgtgtt gttttccgac gattgtcata gtccgaactc cggaaaagct ttctccttac 180 ggtattataa ggaggttgct gttcgaaacg ttaggagttg cagagttgca aaaggatcag 240 gcagcccgag agccgttagc cgtgggaggc gccaaggcga atagtggtgt ccctgatatg 300 agcaaggtga gcaacgagaa acgagtatct agagcagtag ccgacaccgg ccggagaata 360 gtaaagtaac gactcaagac gtgacagtct atatgcggaa acacacagcc ttagaatttg 420 aagagaaggc tgaagcttgg gagagaactg aaagggcggc gaggcacgac ttcgttttta 480 gaaacttgaa gacttacccc cggtacgata ccaaccagag gtttcccagt tgtgagatcc 540 cttgttatca ttacaatact ggcgcgggaa cgaaagtttg ccacgcaaca atctccaaag 600 aaggcggaaa ccagcacttt gtgcttaaca gtctgtttga cttagaagtc actcagatcc 660 ataaccaagc agtcatccac gactgtttga ctcagtttat acagtactcc atctacaaga 720 gaaggaagaa actcaagaag agtagactcc caacgatccc ggaggagcgg cctttggcta 780 cctctgaggt ctcgaaggta gatccggagc agatctccca gatctcatcg cagctcaccg 840 ctgtgaaggc agatctccga gagatcaaga gtcagcaatc ccagctcaag acgggattca 900 accagctgag agattccatc caggaattac tctccagaga atcggaaccc aaaccgattg 960 aagcagccac agctgaggtg gccgatcagc tcaagaaaca gcttaaggaa gttaaggctg 1020 tgcttgagga caccaagaag atcgtcagat ctttgacccc ggagtagatg agcagttggg 1080 aggacacttc cagcaagcag atctacaagg acgcggtaac cgcaacaaat acgctctaca 1140 ccaacggcat cggcgaagga ttcgtcaggc cagcagagct aacagggggt caggtcaccg 1200 taaaggcgat ccgacagaac aacacgctca tcgagctagt tgttgggata agtgcgaggc 1260 tagacaacgc tgccgcacaa ctaagaagcc tcgacaggag gatatcggag ctcgaaacgg 1320 ccatccaggc aaaggaggct gtatccttgc cggaaagtat agtcgacgat ctcaccaagg 1380 agttcgccaa actagacgcc ggaacaggaa ggaaggctcc taagatcggg aagaaaggca 1440 agttcttcgt gtggaaagac ccgaagaatg acgaccagaa cccgaacaga gcaagtacct 1500 cgcgcaacta gcacccgacc cagtagtcgc ggtgaggcgt cgtcaactct agacgaccag 1560 atacgagggt acagacagac cgccagacta agacataatg tcaggcgaag actgaggagt 1620 ttatctcctg gtgggttcag gaacacgcta gagcagcagc ttagccctga tcaagagcta 1680 gcactaagta gaagccgacg agcgaacctt gtgccagcag aagtgctcta cacccacaac 1740 aacaacgagg tagtcaatag agtctaccag cactacgagg agcgaagcgc gcacgtagtg 1800 gacagacaga tggaccttcg gttcatcgag gaagagtcct atcgcaggct agtcgatgag 1860 ggcttacagt tcattcacct tggcatgggg atggtaagga tccacatgtt gcacagaaac 1920 tcggccggga ttgaggccat gattgtcttc agagacacaa ggtggaccga cgacaggcag 1980 gtgatagcca gcatgtccgt cgacatgacg cacggatcac agttggtata tgtgattccg 2040 gatgcgatgc tctccatcca tgatttctac aatcatatcc aggtcagcat acagaccagg 2100 ggatacaatg gaggatggac gggtggtgac tctaacatga tagtcaccag gtcactgatt 2160 ggtaggctaa ccaaccagag catgaccaat tttggttacc agatccaagg agtcacggac 2220 taccttacaa gccatggagt ctcttgcatt ccaggagaac agtggagcgt aaccaacaga 2280 tcaggagagt ggcgactaca gcaatcatct attgcgccac cggagcaggt ccctacggag 2340 gctaggctaa ggccaggacc cagaggtgaa ctcagtatga ggttcacgaa cttccgtgat 2400 caggcgatac gggagagagc gtcggacgaa gataccgaca gtggtagacc agagacaagt 2460 gggcgagacg aaacaacgca ctatgttggt gcgctaagat tcgatctcaa aggcaggtca 2520 aaaccacgag aagaggagtg cttcgaagta gcagctccag acgtgcttca aagctggatg 2580 cagcagctat ccagaagtcc gccaaggcag aatcgctacg aaggccctga atgggataca 2640 ctaggcgagc caagtggcaa gtatgactac aaggtcaggt actcagcacc accaccaaca 2700 ccgtggccga ctaagccaac tggttggggg gatgaagaag aggatcttcc accaccaaga 2760 tttgactcat cgtcagaatc tttttcgggg gggggggaga tagaaccttt ggagtaccac 2820 gaaagcagtg aagacagcta tgaagaggtc agaaggcgtg atacagaaaa tcacaacaac 2880 ctcatagctg agggattcac ccaggaacct aggttcccag gcttatacgc gccagccagg 2940 atagaagtga tcgaggaaga tcactatgag ggtgacgcta gtgagcaaag ctggtctgag 3000 gaagaaccgg aattcgacta tccccagata gcagcagtgg tgaaccaaaa caacgaaccc 3060 gaactggaat atccgacgaa gaaattccag gagcttatgg ctaaaatcaa ggggttccag 3120 aaccagaagg tggagattgc cgccatgaac gctgagtcct caggatcagg cgtgacatcg 3180 ggcaactttg tgccaccaat agcaaccact ggtccatcag catacccgcc agctacggga 3240 acacatggca ctaacatcgg gccacaggac caaggaggtt ggggagggcg tatgcccaga 3300 agtagaatgc caggagggta tggtaggcct cagaggccat ggaccttgcc ttcagcgcag 3360 actgaaaacg gcgtcatgct gatcattccg gaggatttaa ccctcgcagc agatgctatc 3420 aacagatggg agtcaatcac catcaacgtc gtcagcaaac ttgccttcga caacatgcag 3480 gacaaagtcg actacgtcga gaacctgctg ggcgaacgag aaaaggaagt ttggaccact 3540 tggagaatga agtgggaaga cgagtaccgg cggatggttg ccatttcaga tgacaccaga 3600 aatctgaccg ccgcaatcaa aagggtgttt ggggtacatg acccattcac aggaagtacc 3660 ttcctacaaa accaggccta tgcggacttg gagaggttaa gctgcaaaag aatggaggac 3720 gtgatgccat tcctattcac gtactatcag ctggcagcaa aatccggtag gatgtggacg 3780 aacgaggagc tctccgacaa gctgtttcgg aagctaccag aggcagtagg ccccacaata 3840 gagaaagcct acaaagagcg ctacccaggg ttagtaattg gggtaatggc tcgaatcaac 3900 ttcatcatcg agtacctgca gaatgtgtgc aaacaagcag cattacagcg gagtttgaag 3960 aatctcaact tctgccgaac aatgccagtg ccagggtact acgagaagaa gaagtatgga 4020 gtgcgcaagt ccacaacgta caaaggtaaa ccacatgata ctcatgtgaa ggttatcaag 4080 aacaaggaca agaacgcacc agggcgcaag tgtaaatgct acctttgcgg catagaaggc 4140 cactacgcaa gggaatgccc taagaagacg gtacagccac agaggatggc gtacttcgaa 4200 ggcctcgctc tcgcagataa ttgggatgtt ctctctgtag acgtcgggga aagcgacagc 4260 gaaggagtct gctccatttc tgaaggagag acagcaggca ggatggatga gctagcagca 4320 ttcaaaactc agctccccta ccctgtagag ttcgaacatg gcatgttcgt tctcaccatt 4380 gagcaagtca ccgcccctgc agtagcctca ggatggcgca ggcgtacaga gctacgaggt 4440 gaccagaagg tgtgtccgca ccaatggagt gacgtcgccg aggtgtcact agaggacaga 4500 ttctgttctc tctgcggaga caatacgcca gtcggcagaa gggtacactg cacgacatgt 4560 aaggcaaacc tgtgcccagt atgcgcttgg ttggagtttg gcatcaaaat tgtagcagcc 4620 aaaaccgacg ccaccaagtg gaactacctg aataaggatg agttgatcgc tcagctatac 4680 gagcacaacg cgttccttac tcaccagaac aaagctctgc aagctagaat tgaggagttg 4740 acaaaaggcc gaaacaacga tctcattgat ctttgtgaag gtgatccaga cctcatggca 4800 gagatttgtg acgagctttt ccgcaagcca gctagcggag aaacctcgat tttgcggggg 4860 aaggagaggg taaaactcga aatcctggaa gaagaagtcc gtggatacag agaagagcaa 4920 gagctcagga cccccctaca aaaactttct gagggtgcat caacatctta caaggcacca 4980 gaggaaagtg atgaggaaag agtcggagca ctcttagctg aaggagaatt agagaagctc 5040 gctgctgtcg caggagaatc ctattctcgc atgcctaaag gtggcctaaa caagctgtac 5100 cacttaaacg tgcagtttgt catcccaaaa gctgagggtg gtcacataag cttcacagtc 5160 gcggccataa tcgacacagg gtgcacctgt tgctgtataa acggcgcgaa ggttcctaaa 5220 gaagctcaag aagaagcctc atatgcaatg acgttcgcag gcgtcaactc gagaggcaca 5280 accagaaaga agatgagggc gggaaaaatg gtcatcagtg ggaatgattt ctacaccccc 5340 tacatctcgg tctttgacat ggatctccca gacattgaca tgctgatagg atgtaacttc 5400 atcaaagcaa tgcaaggagg gatcaggttc gaaggcactg aagtcaccat ctacaagaag 5460 gtgaccacaa tccagacgac tctggagcct atcaaattgg gctatgcaga gttcgaccct 5520 gacatccagg tggagctaga aagggcatac tacgccgctc cagtgtcaga agcagagcta 5580 atcaagctca gggatcacag gctgctcgct gaattaaagg agcagggctt cataggcaac 5640 gacccaatgt tgcactgggc gaagaaccag gtcaagtgca agcttgacat catcaacccg 5700 gatatcacca tccagggcaa gccgcctagc acagccacac ctgagatcaa agaccgctac 5760 cagcgtcaca tagatgcact gctatccatt ggggtcatcc gaccaagcaa aagcaggcac 5820 cgaacagcgg cattcatcac ctactcgggc accagcgtgg acccgaagac aggggaagaa 5880 atcagaggca aagaaaggat ggtcttcgac tatcgcgctc tgaacaacaa cacgcacaag 5940 gaccagtaca cattgcctgg catcaactcg attgtagcag ctgttggcaa cgccaaaatc 6000 tacagcaagt tcgacttgaa ggctggtttc catcaggtcc taatggaaga atcctccatc 6060 ccttggacag cgttcatcac gccagtagga ttctacgaat ggttggtaat gccttttggt 6120 attgctaacg ctccagcggt tttccaaaga aaaatggata actgcttcca caagctgaga 6180 gagttcgtcg cggtctacat cgacgacatc ctcgtcttca gcaattccct gcaggaacat 6240 gaaagccatt tacggcaaat gcttgaggtt tgcaggaaga atgggttggt gctatcacca 6300 acaaaaatga aggttgctgt cacaacagtg gaattcctag gggccatcat cggcaatggg 6360 aaaatcaagt tgcagcctca catcgtcaag aagatttctg aagttgacga tgaatccctg 6420 agaaccctga aagggttaag aagctggttg ggcataatta actatgccag gaattacatt 6480 cctaactgtg ggaccttgct tggcccactc tacagcaaaa ctagcgaaaa tggggatcga 6540 agaatgagtc ctcaggactg gaagctggtc aggaaagtca aagagctcgt caagagtctg 6600 ccagacttag agctaccacc agcaggagcc tatgtggtca tcgaaacaga cggctgcatg 6660 gaaggatggg gaggagtgtg caaatggaag cacaggaaag gcgaatctgc ctcagcagag 6720 aaagtctgcg catatgcaag cggcaaattc ccggctatca agtccaccat cgatgctgag 6780 atgcatggag taatgaactc cctggagaaa ttccagatct acttcatgga caaaggtgag 6840 gtcaccatta gaacagactg ccaggccata gtagcgttct acgaaaagct caacgctaat 6900 aaaccttcaa gggttcgctg gctcaacttc tgtgactaca tcaccaatac aggagtcaag 6960 gtcgtcttcg agcacatcaa agggaaggac aacgtcctag cagacacgct cagccgactc 7020 acacagacct tagctgcggt tcgggagatg cccgcagaac aggaagagat cctcagacag 7080 gctctcaaca atactgaggt ccagcccaag gaacgaagga tcctcatgga tcacatctgt 7140 ggaatgctgg aagcccaggc ccaaaaggcc agtctccacc aacatgggct tagcccatga 7200 tctatctgat aatggaagct gacgcaccgg atgacttcac cataaatgat tcgtcatcgc 7260 ttacgccatc agctctatta ttactttact tttgtaagtg cgccagtagt gcgctgagtc 7320 agggaatctt atcccttatg tcttttagcc acactttcgg tggtagtgga tgcttttagt 7380 acaagcatta ttgtaaaagc taagcttttg agctgtcgat ggggcccaat gagcacccga 7440 gcttcaaaac cttatcttct actccctata taaggagtct taggaagaga gatcagatat 7500 cgaaaatcca tcatcgaaca cctttcatag aatatctttg atcaaatcaa taaacaaatc 7560 ttccgcaata ctctgttttc tttagttctt tactgttacc tagccagtca gtagagaaga 7620 tccacgaaaa tttttatttt ccgggaccat tc 7652 //