ID HQ848383; SV 2; linear; genomic DNA; STD; VRL; 2756 BP. XX AC HQ848383; XX DT 31-MAY-2011 (Rel. 109, Created) DT 13-AUG-2014 (Rel. 121, Last updated, Version 4) XX DE Tomato leaf curl Palampur virus isolate Allipur segment DNA-A, complete DE sequence. XX KW . XX OS Tomato leaf curl Palampur virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2756 RA Raj S.K., Srivastava A., Kumar S.K., Snehi S.K.; RT "Begomovirus associated with mosaic disease in Cucumis sativus in India"; RL Unpublished. XX RN [2] RP 1-2756 RA Raj S.K., Srivastava A., Kumar S.K., Snehi S.K.; RT ; RL Submitted (05-JAN-2011) to the INSDC. RL Plant Molecular Virology, National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U.P. 226001, India XX RN [3] RC Sequence update by submitter RP 1-2756 RA Raj S.K., Srivastava A., Kumar S.K., Snehi S.K.; RT ; RL Submitted (06-AUG-2014) to the INSDC. RL Plant Molecular Virology, National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U.P. 226001, India XX DR MD5; aa9c3fa390398dea7cbd029c3f6f2ef2. XX CC On Aug 6, 2014 this sequence version replaced gi:333652132. XX FH Key Location/Qualifiers FH FT source 1..2756 FT /organism="Tomato leaf curl Palampur virus" FT /segment="DNA-A" FT /host="Cucumis melo var. flexuosus (Armenian cucumber)" FT /isolate="Allipur" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="Aug-2010" FT /db_xref="taxon:526476" FT gene 120..485 FT /gene="V2" FT CDS 120..485 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:B3CJQ8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B3CJQ8" FT /protein_id="AII85548.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLKEIEKTYSPDTIGYDLVRDL FT ISVVRARNYGEASSRYLHFNARIESTPSSELRQPVCCPCSCPYCPRHKGKGMGEQTHEP FT ETKILPDVSKLGRAQGL" FT gene 280..1050 FT /gene="V1" FT CDS 280..1050 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:B3CJQ9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B3CJQ9" FT /protein_id="AEF65953.2" FT /translation="MVKRPADIYISTPASKARRRLNFDSPYAVRAAVPIVRATKAREWV FT NRPMNRKPRFYRMYRSSDVPRGCEGPCKVQSFESRHDVSHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLKKWHSTVTGGTYASKEQALVKRFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHPSNPVYATLKIRIYFYDSVTN" FT gene complement(310..828) FT /gene="C5" FT CDS complement(310..828) FT /codon_start=1 FT /gene="C5" FT /product="C5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:A0A076K059" FT /protein_id="AII85550.1" FT /translation="MPFFEHLISITMHILNSGSARFVVEHIKNFAEILWRTRRSTITHQ FT EKHHTIRVVLGLDILVHPDLAKHVDGLHTESLSDAMCETGSTGNVANTHHLTNMGDIVP FT GFKRLHLTWAFTAPGHVRASIHPVKSWFPVHGSVHPFPCLCGADNRDSCTDSIRAVEVQ FT TTACFRCGR" FT gene complement(1047..1457) FT /gene="C3" FT CDS complement(1047..1457) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:F6L7B2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F6L7B2" FT /protein_id="AEF65954.1" FT /translation="MITDSRTGEYIIADRAESGVYIWDVPNPLYFKTLKHDERPCLTNH FT DIITVRIQFNHNLRKALGLHKCFLTFQIWTGLRPQTGRFLRVFKTQVLKYLDMIGVVGI FT TNVLRAAYHVLDNVLQRTVDVWTTYDVQLNTY" FT gene complement(1177..1596) FT /gene="C2" FT CDS complement(1177..1596) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional activator protein" FT /db_xref="GOA:F6L7B3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F6L7B3" FT /protein_id="AEF65955.1" FT /translation="MQSSLHSRDHSIPVAKTSLTKKKKKNIRRRRVDLQCGCSYYISIN FT CHDHGFTHRGIHHCGSSREWRVYLGRSKSPVFQNFETRRETLPHEPRHYNSPNTVQPQP FT EESTGASQVFSNIPDLDGLTPSDWAFLESFQNPGA" FT gene complement(1499..2602) FT /gene="C1" FT CDS complement(1499..2602) FT /codon_start=1 FT /gene="C1" FT /product="replicase protein" FT /db_xref="GOA:F6L7B4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F6L7B4" FT /protein_id="AEF65956.2" FT /translation="MAPPTRFRINAKNYFLTYPKCSLTKEEALSQLQNLETPTSKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVAPSRSAHFHPNIQGAKSASDVKTYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKEDALKVLKELAPKDYVLQFH FT NLMTNLDRIFPSRIEVYRSPFTVSSFDRVPPELVDWVSSNLRCSAARPFSAALPIRPIG FT LVLEGDSRTGKTMWARSLGPHNYLCGHLDLNPRVYSNDALYNVIDDVDPHYLKHFKEFM FT GAQRDWQSNTKYGKPMMIKGGIPTIFLCNKGPQSSYKEFLDEEKNAALKQWALKNAVFI FT TLEGPLYSGRENVAHQEEEEEHPQETS" FT gene complement(2269..2445) FT /gene="C4" FT CDS complement(2269..2445) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B3CJR4" FT /protein_id="AII85549.1" FT /translation="MGLRISMFSSNLKENSSAKITDSSTWLPQVGQHISIRTFRELNQR FT QMSRHTSTKTETF" XX SQ Sequence 2756 BP; 738 A; 602 C; 610 G; 806 T; 0 other; accgaatggc cgcggtgcct tttgtgtggg tccagaacca atgaaattcg agatacatgg 60 cttatttaat gcgtggggac caataaatag acttgctcac caagcttgga tccacaaaca 120 tgtgggatcc attattgcac gaatttcctg aaagcgttca tggtcttagg tgcatgctag 180 ctgtaaaata tctcaaagag atagaaaaga cctactctcc ggacacaatc ggatacgatc 240 ttgttcgtga cctaatctct gtcgtccgtg ccagaaacta tggtgaagcg tccagcagat 300 atctacattt caacgcccgc atcgaaagca cgccgtcgtc tgaacttcga cagcccgtat 360 gctgtccgtg cagctgtccc tattgtccgc gccacaaagg caagggaatg ggtgaacaga 420 cccatgaacc ggaaaccaag attttaccgg atgtatcgaa gctcggacgt gcccaggggc 480 tgtgaaggcc catgtaaggt gcaatctttt gaatccaggc acgatgtctc ccatattggt 540 aaggtgatgt gtattagcga cgttacccgt ggaaccggtc tcacacatcg cgtcggaaag 600 cgattctgtg tgaagtccgt ctacgtgctt ggcaagatct ggatggacga gaatatcaag 660 accaagaacc acacgaatag tgtgatgttt ttcttggtgc gtgatcgtcg acctacgggt 720 gcgccacaag atttcggcga agtttttaat atgttcgaca acgaacctag cactgccact 780 gttaagaata tgcatcgtga tcgatatcaa gtgctcaaaa aatggcattc gactgtgacg 840 ggaggaacat acgcgtcgaa ggaacaagca ttagttaaac gttttattag agttaataat 900 tacgttgtat ataatcaaca agaggccggc aagtatgaga atcatactga aaatgcatta 960 atgttgtata tggcctgtac tcatccatca aatcctgtat atgctacttt aaaaatccgg 1020 atctattttt acgattcggt gacaaattaa tatgtattaa gttgtacatc atatgttgtc 1080 catacatcaa ctgttctttg caatacattg tctaatacat gataagctgc tcttaataca 1140 ttagtaattc caacaacacc tatcatatcc aggtacttaa gcacctgggt tttgaaaact 1200 ctcaagaaac gcccagtctg agggcgtaag cccgtccaga tctggaatgt tagaaaacac 1260 ttgtgaagcc ccagtgcttt cctcaggttg tggttgaact gtattcggac tgttataatg 1320 tcgtggttcg tgaggcaagg tctctcgtcg tgtttcaaag ttttgaaata caggggattt 1380 ggaacgtccc agatatacac gccactctct gctcgatccg caatgatgta ttcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcga tatgtaatac gaacaaccac actgcaaatc 1500 aactcgtctc ctgcggatgt tcttcttctt cttcttggtg agcgacgttt tcgcgaccgg 1560 aatagagtgg tccctcgagt gtaatgaaga ctgcattctt caatgcccac tgcttcagtg 1620 ctgcattctt ttcttcgtcc aagaattctt tatagctgct ttgtggtcct ttattgcaca 1680 agaagatagt gggaatgccg cctttaatca tcatcggctt tccgtatttt gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaaatgctt tagatagtgg ggatcaacgt 1800 catcaatgac gttgtataat gcgtcgttac tgtaaaccct agggttcaga tccaagtggc 1860 cgcacaagta attgtggggt cccaaactac gcgcccacat tgttttgccc gtacgactat 1920 cgccctccaa tactaaccct atgggtctaa tcgggagcgc agcggaaaaa ggccgcgcag 1980 cggaacacct caaatttgac gacacccaat cgacgagttc tggcggaact ctgtcgaagg 2040 acgaaacagt aaatggcgaa cgataaactt cgattcgaga aggaaaaatc cgatctaaat 2100 ttgtcattaa attgtgaaac tgcaacacat aatcttttgg tgctaattct tttagcacct 2160 tcaatgcgtc ttctttattt ccagtattaa ttgcttgtgc gtatgcatcg ttagctgttt 2220 gttgaccacc acgagcagat cgtccatcga tctggaaaac accccactct aaaacgtctc 2280 cgtctttgtc gatgtatgtc ttgacatctg acgctgattt agctccctga atgttcggat 2340 ggaaatgtgc tgaccgactt ggggcaacca agtcgaagaa tctgttattt ttgcactgga 2400 attttccttc aaattggatg agaacatgga tatgcggaga cccatcttcg tgaagctctc 2460 tgcagatttt tatgaatttc tttgatgtag gggtttctag gttttgtaat tgggaaagtg 2520 cctcttcttt agttagagag cactttggat atgtaaggaa atagtttttt gcatttattc 2580 tgaaacgagt tggcggagcc ataaacctcg tatttccaac cggtgtctct caacttcttg 2640 tattatattg gtgtctgggg tcctatatat acataagacc ctaaatggca taattgtaat 2700 tttagagata aaattacttt aattcaaact cctatagcgg ccattcgtat aatatt 2756 //