ID   HQ842622; SV 1; linear; genomic RNA; STD; VRL; 2047 BP.
XX
AC   HQ842622;
XX
DT   20-NOV-2011 (Rel. 110, Created)
DT   20-NOV-2011 (Rel. 110, Last updated, Version 1)
XX
DE   Umatilla virus isolate USA1969/01 segment 4, complete sequence.
XX
KW   .
XX
OS   Umatilla virus
OC   Viruses; Riboviria; Reoviridae; Sedoreovirinae; Orbivirus.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-2047
RX   PUBMED; 21897849.
RA   Belaganahalli M.N., Maan S., Maan N.S., Tesh R., Attoui H., Mertens P.P.;
RT   "Umatilla virus genome sequencing and phylogenetic analysis: identification
RT   of stretch lagoon orbivirus as a new member of the Umatilla virus species";
RL   PLoS One 6(8):E23605-E23605(2011).
XX
RN   [2]
RP   1-2047
RA   Belaganahalli M.N., Maan S., Maan N.S., Tesh R., Attoui H., Mertens P.P.C.;
RT   ;
RL   Submitted (29-DEC-2010) to the INSDC.
RL   Arbovirus Molecular Research Group, Vector Borne Disease Programme,
RL   Institute for Animal Health, Pirbright Laboratory, Ash Road, Pirbright,
RL   Woking, Surrey GU24 0NF, United Kingdom
XX
DR   MD5; 6cea751d11f4d13e6e5673a4cb2cd1eb.
XX
CC   GenBank Accession Numbers HQ842619-HQ842628 represent sequences
CC   from the 10 segments of Umatilla virus.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2047
FT                   /organism="Umatilla virus"
FT                   /segment="4"
FT                   /host="bird"
FT                   /isolate="USA1969/01"
FT                   /serotype="1"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /isolation_source="pool of Culex pipiens mosquitoes"
FT                   /collected_by="John Lazuick, Arbovirus Disease Section, Ft.
FT                   Collins, USA"
FT                   /collection_date="Jul-1969"
FT                   /db_xref="taxon:40060"
FT   CDS             30..1772
FT                   /codon_start=1
FT                   /product="NS1"
FT                   /db_xref="InterPro:IPR002630"
FT                   /db_xref="UniProtKB/TrEMBL:G8DP05"
FT                   /protein_id="AEE98371.1"
FT                   /translation="MDAFIRTFGVPHNERPHLHLTWELREILTCSHRLNRCRIYGRCFR
FT                   ENYEFLVEEITRRHDEHAARQLIEESGELCADRNLVWTCANNWKIKGGTINVAADWLNI
FT                   FTEFNKIHQESVFQSEVTDEAVRFANHAEHTAWTYLDDSTSLLHGFFIPICGDRIVDIV
FT                   SSQRFGEFLVCYYDPYKANITGVVFREDRQITAALRNILHVLGDAHPSCQTTQAQHRPT
FT                   QVVFLPRMELLSANERVRVLRTLEMDSKFLKKLKSRESERMFFQKFGVHGRGISDFLTL
FT                   MLTPLGGVISPVQMQIQRPRHMFQDNFMPMLMLRMLFRGELVEFDLSRPSLIYRYMYQS
FT                   TATCQCCFLKENGVTSVTLIDTRDRDFQLDEGVRVGRLLNCETTIAFGNVDLQNGEMLT
FT                   RLGQHWIAIRCSSFTQALLTTLTVMHRDLRGKGYEDIDHKMTALALLGRCYLYWIPNEE
FT                   NAIGLFRAMTMVVLGRSDGNLKLWMETMDLGRFLHMILRPAKESKILRERMHAAMVRLS
FT                   LHALYVCYGKPFNAFIAPGVIPTISAQPTEIDGLLEGAAGAFGQRAFIREVRIPIDEFS
FT                   DLNI"
XX
SQ   Sequence 2047 BP; 605 A; 355 C; 484 G; 603 T; 0 other;
     gtttaaaaac ctatcggtgt gccagcatca tggacgcatt catacgtaca tttggagtac        60
     ctcataacga aagaccgcat ctacatctga cttgggaatt gagagagata ctgacctgta       120
     gtcatcgatt gaataggtgt cgtatatatg gacgctgttt ccgtgaaaat tatgaatttt       180
     tagtcgaaga aattacaaga cgacatgatg aacacgcggc aagacagctg attgaagaga       240
     gtggcgaact gtgtgcggat aggaatttag tctggacatg tgccaataat tggaaaatta       300
     agggtggaac catcaatgtc gcagcggatt ggctaaatat cttcaccgaa ttcaacaaaa       360
     ttcatcagga gagcgtgttt caatcggagg ttacagatga ggccgtacgt ttcgcaaatc       420
     atgcagaaca tacagcgtgg acttatcttg atgattcgac tagtcttcta catggcttct       480
     ttattcctat ttgtggagac cggatcgtgg atattgtctc gagtcaacga tttggagaat       540
     ttctggtttg ctactatgat ccatacaaag cgaacatcac cggtgttgtt ttcagagaag       600
     atcggcaaat tacagctgcg ttaagaaaca tcttgcatgt cttaggagat gcacatccgt       660
     catgtcagac aactcaggcg caacatcggc caacgcaagt tgtgtttttg ccaaggatgg       720
     aattgctatc agcgaatgaa agagttagag tgctaagaac gttggagatg gattcgaagt       780
     ttttgaaaaa attaaaatct cgagagagtg agcgaatgtt tttccagaag tttggagtcc       840
     atggacgcgg aatttcggat tttctaacgt tgatgctaac accacttgga ggagtgatca       900
     gtccagttca gatgcagatt caacggcctc gccatatgtt tcaggataac tttatgccaa       960
     tgctaatgtt gagaatgctt ttccgaggtg agctcgttga attcgaccta tcaaggccat      1020
     ctctaatata tcgttacatg taccaaagca cagccacatg ccaatgttgc tttctgaaag      1080
     aaaatggagt taccagcgtg acgttaattg atacacgaga cagggatttc cagctagatg      1140
     aaggagttag agtaggaagg ttgctgaatt gtgaaacgac cattgcattc gggaacgttg      1200
     atctacaaaa tggagagatg ctcacaagat tgggacagca ttggattgcg attagatgtt      1260
     caagcttcac gcaagcactt ctaaccactt taacagttat gcatcgtgat ctgagaggaa      1320
     aaggatatga agatatcgat cataagatga cagcattagc tctgcttgga aggtgttatc      1380
     tttactggat tcccaacgaa gagaacgcga ttggattgtt tcgagcaatg acgatggttg      1440
     ttcttggaag gtctgatgga aatctgaaac tgtggatgga aacaatggac ttggggcgtt      1500
     tcttgcatat gattttaaga ccagctaaag aatcaaagat tttaagagag aggatgcatg      1560
     cggcgatggt acgtctatct ttgcatgcac tctatgtatg ctacggaaaa ccattcaatg      1620
     cgttcattgc tccaggagtg attcctacca ttagtgcaca accaacagag atcgatggat      1680
     tactagaagg agcagcagga gcatttggac aacgcgcctt cataagggaa gtgcggattc      1740
     caattgacga attttctgat ctgaacattt gaaaagaaca ttttgcataa cccacacgat      1800
     tatcatcatt tatccttaat cttatttttt cgtttttata attatgtatt tagtaatagt      1860
     gtatgtgtta gaacatttta tatctgtttt tgtgtaaaat tattagtatg tagatcaaga      1920
     ttagtgtgtg tacccgtttt gtgtgaaaag cattttaggc ataagatcct taaaccgctt      1980
     tgcgagtgct ctgtttgtat gtatgtttct tgcgtgcatc tatattatag gataggttta      2040
     aggatac                                                                2047
//