ID HQ842621; SV 1; linear; genomic RNA; STD; VRL; 2411 BP. XX AC HQ842621; XX DT 20-NOV-2011 (Rel. 110, Created) DT 20-NOV-2011 (Rel. 110, Last updated, Version 1) XX DE Umatilla virus isolate USA1969/01 segment 3, complete sequence. XX KW . XX OS Umatilla virus OC Viruses; Riboviria; Reoviridae; Sedoreovirinae; Orbivirus. XX RN [1] RC Publication Status: Online-Only RP 1-2411 RX PUBMED; 21897849. RA Belaganahalli M.N., Maan S., Maan N.S., Tesh R., Attoui H., Mertens P.P.; RT "Umatilla virus genome sequencing and phylogenetic analysis: identification RT of stretch lagoon orbivirus as a new member of the Umatilla virus species"; RL PLoS One 6(8):E23605-E23605(2011). XX RN [2] RP 1-2411 RA Belaganahalli M.N., Maan S., Maan N.S., Tesh R., Attoui H., Mertens P.P.C.; RT ; RL Submitted (29-DEC-2010) to the INSDC. RL Arbovirus Molecular Research Group, Vector Borne Disease Programme, RL Institute for Animal Health, Pirbright Laboratory, Ash Road, Pirbright, RL Woking, Surrey GU24 0NF, United Kingdom XX DR MD5; 6297fd5f3837ab8790c64573b0cf06bb. XX CC GenBank Accession Numbers HQ842619-HQ842628 represent sequences CC from the 10 segments of Umatilla virus. XX FH Key Location/Qualifiers FH FT source 1..2411 FT /organism="Umatilla virus" FT /segment="3" FT /host="bird" FT /isolate="USA1969/01" FT /serotype="1" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="pool of Culex pipiens mosquitoes" FT /collected_by="John Lazuick, Arbovirus Disease Section, Ft. FT Collins, USA" FT /collection_date="Jul-1969" FT /db_xref="taxon:40060" FT CDS 19..2343 FT /codon_start=1 FT /product="VP3" FT /note="similar to outer shell protein VP2 of BTV" FT /db_xref="UniProtKB/TrEMBL:G8DP04" FT /protein_id="AEE98370.1" FT /translation="MAELNLLLVKRIEQTEQHLYNFVCQDVDIVIELNDCVGIDNYRIK FT YVDGIKALGQQTTQYKAYRSSDLVSRKNGFLSLKDTTSRLSDQIKFKHEGANSNRQYYK FT ILSSAIAKLEEGKGGVDPITRCNRNQNLIVENGILQNKMAFHHLEGKIYANHRSMTASF FT YHLNSRCRYGGYHDDLVNLFFILQNQNMLVYTKPKIHFDNFWNEADSQSVTTRLSDGTN FT HSETKQYKYNFLELDALGRRQVKTSAEKALNTMNRDHYNTLLGKEMRFGVDARLLPTSY FT NHSKHDLFNHLSLIEVVQESIQSSRLIWKWKRYERMKRIYGKQGISSENCGFRETLGII FT YIRYAELYCSLFNTWHLADNRMVELQRSQSEGTTNFFDRNEVDLSLREPIESVLKYAFP FT SCQVQEFLHDAYYSEEKGFKLYEVFLKHFSLYIGCIKNFEKDLRERTSMELIDMMREFN FT LFVLLTTFLPGVGFSDERGTAKLNLLIFREKADASFTGSATGSIAIENYGMEAYVREYS FT LQLNKTFGSTIEDFLNDLAHHPFKFQDFNVCEDQFEWEEDTRWTAKWAEWEQQRNIELN FT GKREVMGEKFTDFKAKWNAETAKIKERRDIRRQILKLAGEVAKTYRKLLIEKDLVIYKE FT YDKICRDAYKYDMAMSQCGGLSSVVSFIYPISYPEKQFISLLIVDSLTKTSEAEALYNQ FT YVKRLKSEGGRVIIQILKDRKALSDTYLTSDVLNVRTTGIVKTKIRYYSHNAVSGILVT FT ISSDVAKFGTHLYFAKLGAVR" XX SQ Sequence 2411 BP; 819 A; 379 C; 543 G; 670 T; 0 other; gtttaaaatc tgagagccat ggcggagctg aatttgctac ttgtcaagcg aattgaacaa 60 acagaacagc atttatacaa ttttgtttgc caggacgtag atatcgtgat tgagttaaac 120 gattgtgtgg gtatcgacaa ttatagaata aaatatgtag atgggattaa agcattagga 180 caacagacta ctcaatataa agcatatagg tcgagtgatc tagtgagtcg aaagaatggt 240 ttcttaagct taaaagatac gacgtcgcga ctgtcagatc agattaagtt taagcatgag 300 ggggcgaatt caaaccgtca atattataag attttgtcga gcgcgatcgc gaaacttgaa 360 gaaggtaaag gaggtgttga tccaataaca agatgtaata gaaatcaaaa cttaattgta 420 gaaaatggta ttttacagaa taaaatggca ttccaccact tagagggaaa gatttacgcc 480 aatcacagat cgatgacagc gtcattttat cacctgaata gtcgatgccg atatggagga 540 tatcatgacg atttagtgaa tctattcttt attctacaaa atcagaatat gctagtatat 600 acaaaaccaa aaatacattt tgacaatttt tggaatgagg ctgactccca atctgttaca 660 actcgattaa gtgatggaac gaatcattcc gagacgaagc agtataaata caatttttta 720 gagttagatg cattaggacg acgtcaagtg aaaacttcag cagaaaaggc gctaaatacc 780 atgaacaggg atcattacaa taccttacta gggaaggaga tgagatttgg agttgatgca 840 aggttacttc cgactagcta taatcattct aaacatgacc ttttcaatca tttgagtctg 900 atagaggtag tacaggaatc catacaatct agtcgactaa tttggaaatg gaagagatat 960 gaaaggatga agcgcatata tggcaagcaa gggatctcat cagaaaattg tggttttagg 1020 gaaactctgg ggattatcta tattcggtat gctgagttat attgcagtct ttttaatacc 1080 tggcacttag cagataatcg aatggtggaa ttacaacgat cccaatcaga aggtacgaca 1140 aatttctttg accgaaatga agtagacctg tcgctaagag aacctattga aagtgtactt 1200 aagtacgctt ttcccagctg tcaagtgcag gaatttcttc acgatgcgta ttactcagaa 1260 gaaaaaggat ttaagctcta tgaggtattt ttaaaacatt tttcgctata tattggatgc 1320 ataaagaact ttgagaagga tctaagagag aggaccagca tggaacttat agatatgatg 1380 cgcgaattca acctttttgt tttgttaact actttcttgc ccggcgttgg attttcagat 1440 gaacgaggta cagcgaaatt gaatctgtta atttttcgtg agaaggcgga tgctagtttc 1500 acaggcagtg cgacaggtag cattgcgata gagaattatg gtatggaagc gtacgttaga 1560 gagtacagtt tgcaactcaa taaaaccttc ggttccacaa tagaagactt tcttaacgac 1620 ttagcgcacc atccctttaa attccaggat tttaacgtgt gtgaagatca atttgagtgg 1680 gaagaggata cacggtggac cgcaaagtgg gctgaatggg aacagcagag gaatattgag 1740 ttgaacggaa aaagagaagt aatgggagag aagtttacag actttaaagc aaagtggaac 1800 gcggagacag ctaagattaa agagcgacgg gatatacgac ggcagattct aaagttagcg 1860 ggagaagttg caaagacata ccggaagctg ctaattgaaa aggatttagt gatatataaa 1920 gaatatgata aaatttgtcg ggatgcatat aaatatgata tggcaatgtc gcaatgtggc 1980 gggctttctt cggttgtatc atttatctat ccaatctctt acccagagaa gcaattcata 2040 agtcttttaa ttgttgactc cctaactaaa acttctgaag cagaagcgtt atataatcaa 2100 tatgttaaaa ggcttaagtc agagggtggg agggttatca ttcaaattct taaagataga 2160 aaagcgctca gtgatacata tttaacatct gatgttttaa acgtacgcac aacgggcatt 2220 gtaaaaacga aaatcagata ctattcacat aatgcagtgt cagggatcct ggtcacaatc 2280 agttcagatg ttgccaaatt cggaactcat ttatatttcg caaaactggg cgcagttaga 2340 taatgtaagc ttggcacagc aatatgaagc ccgtgatcct agtcttaggt tcgctctcag 2400 gttaaggata c 2411 //