ID HQ842620; SV 1; linear; genomic RNA; STD; VRL; 2791 BP. XX AC HQ842620; XX DT 20-NOV-2011 (Rel. 110, Created) DT 20-NOV-2011 (Rel. 110, Last updated, Version 1) XX DE Umatilla virus isolate USA1969/01 segment 2, complete sequence. XX KW . XX OS Umatilla virus OC Viruses; Riboviria; Reoviridae; Sedoreovirinae; Orbivirus. XX RN [1] RC Publication Status: Online-Only RP 1-2791 RX PUBMED; 21897849. RA Belaganahalli M.N., Maan S., Maan N.S., Tesh R., Attoui H., Mertens P.P.; RT "Umatilla virus genome sequencing and phylogenetic analysis: identification RT of stretch lagoon orbivirus as a new member of the Umatilla virus species"; RL PLoS One 6(8):E23605-E23605(2011). XX RN [2] RP 1-2791 RA Belaganahalli M.N., Maan S., Maan N.S., Tesh R., Attoui H., Mertens P.P.C.; RT ; RL Submitted (29-DEC-2010) to the INSDC. RL Arbovirus Molecular Research Group, Vector Borne Disease Programme, RL Institute for Animal Health, Pirbright Laboratory, Ash Road, Pirbright, RL Woking, Surrey GU24 0NF, United Kingdom XX DR MD5; 3a1bfeceae2c0e1d7454fd1d2879afcf. XX CC GenBank Accession Numbers HQ842619-HQ842628 represent sequences CC from the 10 segments of Umatilla virus. XX FH Key Location/Qualifiers FH FT source 1..2791 FT /organism="Umatilla virus" FT /segment="2" FT /host="bird" FT /isolate="USA1969/01" FT /serotype="1" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="pool of Culex pipiens mosquitoes" FT /collected_by="John Lazuick, Arbovirus Disease Section, Ft. FT Collins, USA" FT /collection_date="Jul-1969" FT /db_xref="taxon:40060" FT CDS 19..2736 FT /codon_start=1 FT /product="subcore shell T2 protein" FT /note="VP2" FT /db_xref="GOA:G8DP03" FT /db_xref="InterPro:IPR002614" FT /db_xref="InterPro:IPR016029" FT /db_xref="UniProtKB/TrEMBL:G8DP03" FT /protein_id="AEE98369.1" FT /translation="MDGQPARQTPAEQTRNSPYLRGDEVRNDSGPLLSVFGLQEILAKV FT RDAQTRLQMSAGEAPPTPPDIQTMFDNLHALANERPFRIERQPMSYYRHQAVQSDERIF FT QINRFYEQISAIGADIEGDDTQQLLETVLRRIQFVRDQGSFIIHDIPTYFENGIEIISR FT SALGLDVEEALTALNNRERAILDAQLRTYRIITRPVQNVYYDLFNAAMPEPIYNVHQSL FT TNYVVNDQREDYRRAQAWLRLYSDNKGVTFDRNLQTDIFSPDTMYILSYTLPPNPSIIW FT SLPRCGISNLMLNAAIGLPMGQYILPNSKIASVTITARITQNSPFSQVQATTATEAQMH FT DVRKIYLALMFPNQILLDIKTEPGHSVDQVVNSVAGVIGKIMFTYGPRLFNITSRTAHI FT LDRACSDFLTSYSQQNVRFNIRSRAPFDWTATLRTETFDGNRLRMDPVSGRGFNGYRAN FT DLRNEPTCYPHVSRRVCYTGYDSTDILDERFSGSEHMYPTLQEIMTALRVTGHTQERSY FT LYAMSQHHIVRFAYLNQIINRDLLSAFSLPDDLFHELMDRIPLDELTANGPIILDISMH FT SIWHAYKMRFLPTEHSTFQMIQPLIESIFSSQISVMKLNAIELRNFTIANPDSFPNLKA FT MDVWRAVYANVPESIKAMMDLAGQHWFITAYDCNRWMNNPEVQVSIPYRCMSAAWRCLD FT DANTIMLTRDVYIHRTSIPELAIENIEEFRRRAEFFTNVTSDQPPAHQRVYLPVQAAIH FT RAGEGRFKIYLRSLLDEGYYVRVGSGVRPLVLEIHNKLPSREILERLPYSYQTTKSDGP FT VAKFSFSTTGRVNGILIMYSADDHSTPDEMVNVNPTYCNTLVILKEMPFSRVETSSILN FT VVNRDLVAIKKKTRIYDLTEALTAGNRQAIPSND" XX SQ Sequence 2791 BP; 886 A; 560 C; 599 G; 746 T; 0 other; gtttaagatg actcagcaat ggatggccaa ccagcaagac aaacgccagc agaacaaacc 60 agaaactcac catatctacg aggtgacgaa gtcagaaatg attcgggtcc tcttctgtcc 120 gtattcggat tacaggaaat cctcgccaag gtgcgtgatg cacaaactag actccaaatg 180 tcagcaggtg aagcgccacc gactccacca gatattcaga ccatgtttga caacttacat 240 gctcttgcaa atgaaagacc gttcagaata gagaggcaac caatgagtta ctatagacat 300 caagctgtgc aatcggatga gaggattttt caaataaata ggttctacga acagatctct 360 gccattggtg cggatattga aggagatgat acgcaacaac tattggagac ggtattacgc 420 agaattcaat ttgtacgtga tcaaggaagt tttatcattc atgatattcc aacctacttt 480 gaaaatggaa tcgaaatcat atctagaagc gcgttgggtt tggatgttga ggaagcatta 540 accgcactaa ataatagaga gcgagcgata ttggatgcgc aattgcgaac ttatagaatt 600 ataactcgac cagtacagaa tgtgtactat gatttattca acgccgcgat gccagaacca 660 atttataatg tccatcagtc tttgacaaat tatgtcgtta atgatcagcg cgaagattac 720 agacgcgcac aggcatggtt aagactttat tcagacaaca aaggagtaac ttttgataga 780 aacttacaga ctgatatttt tagtccagac acaatgtata ttttatcata cactttacca 840 ccgaatcctt caattatctg gagcttacca cgatgtggaa tttctaatct aatgttaaac 900 gccgcaatcg gtcttccaat gggacagtac atattgccaa attcgaaaat cgcctcggtt 960 acaattacgg cacgtattac acagaattct cccttctctc aagtgcaggc gacgaccgcg 1020 acagaggcgc agatgcatga tgtcagaaag atatatcttg cgttaatgtt tcctaaccaa 1080 attttattag atataaagac cgaaccagga catagcgttg atcaggttgt aaatagtgtg 1140 gcaggtgtta tcgggaaaat tatgtttacg tatggaccaa gattgttcaa tattacatca 1200 cgcacagcgc atatattgga cagagcatgc agtgattttt taacgagcta cagtcaacaa 1260 aacgttcgtt ttaatattcg tagtcgagcg ccttttgatt ggactgcgac gttacggaca 1320 gaaacattcg atggaaacag gttaagaatg gacccagttt cgggtcgagg ctttaatggc 1380 tatagagcga atgatctacg aaatgagccg acatgttatc ctcacgtctc aagacgcgta 1440 tgttacaccg gttatgactc gacagatata ctagacgaaa gattcagtgg tagcgagcat 1500 atgtacccaa cattacaaga gatcatgacc gcattgcgtg ttacaggaca cactcaagaa 1560 cgaagctatc tttacgcaat gtcccaacac catattgtac gatttgcata cttgaatcaa 1620 atcattaatc gagatttgtt gtcggccttt agcttaccag atgatttgtt tcatgaattg 1680 atggatcgga ttccactgga cgaattaaca gcaaatgggc caattatctt agatatttcg 1740 atgcattcaa tttggcatgc gtataagatg cgatttctac caactgaaca ttcaacattt 1800 cagatgatcc agcctttaat tgagtcaatt ttttcgtcgc aaatctcagt catgaaattg 1860 aacgcgattg aattgcgaaa cttcacgata gcgaaccctg atagcttccc aaatctaaaa 1920 gcaatggatg tctggagagc agtgtatgca aacgttccgg agagcataaa ggcgatgatg 1980 gatctagctg gtcagcattg gttcattact gcttatgatt gtaataggtg gatgaacaac 2040 cctgaagtac aagtttcgat tccataccga tgcatgagcg ccgcatggag atgtcttgat 2100 gatgcgaata cgataatgtt aacgagagat gtatatattc atcgcacttc tatcccagaa 2160 ttagcgattg agaatatcga ggagtttagg cgacgtgcgg agttcttcac gaatgtgacc 2220 tctgatcagc caccagcgca ccaacgagta tacttaccag tacaagcagc aatacataga 2280 gcaggagaag gaagatttaa gatttactta agatctctac tagatgaagg ttattatgtg 2340 cgcgttggat caggagtcag accacttgtg ctagaaatcc acaataaatt accatcacgg 2400 gagatcttag agcgtttacc atatagttat cagacgacaa aaagcgatgg gccagttgca 2460 aagttttcat ttagtacaac aggaagagtt aatgggatct taatcatgta cagcgcggat 2520 gatcattcca cacccgatga gatggttaac gtcaacccga cctactgcaa cactttggta 2580 attttgaaag aaatgccctt ttcacgtgtt gagaccagtt caatattaaa tgttgtgaat 2640 agagatttag ttgcaattaa aaagaagact agaatttatg atttgacaga ggctctaact 2700 gctggaaacc gccaagccat tccttccaac gattgagcac gagaaatcag ccacctcgcg 2760 ttcctcctgg aagggggtca tcaaaagata c 2791 //