ID HQ842619; SV 1; linear; genomic RNA; STD; VRL; 3933 BP. XX AC HQ842619; XX DT 20-NOV-2011 (Rel. 110, Created) DT 20-NOV-2011 (Rel. 110, Last updated, Version 1) XX DE Umatilla virus isolate USA1969/01 segment 1, complete sequence. XX KW . XX OS Umatilla virus OC Viruses; Riboviria; Reoviridae; Sedoreovirinae; Orbivirus. XX RN [1] RC Publication Status: Online-Only RP 1-3933 RX PUBMED; 21897849. RA Belaganahalli M.N., Maan S., Maan N.S., Tesh R., Attoui H., Mertens P.P.; RT "Umatilla virus genome sequencing and phylogenetic analysis: identification RT of stretch lagoon orbivirus as a new member of the Umatilla virus species"; RL PLoS One 6(8):E23605-E23605(2011). XX RN [2] RP 1-3933 RA Belaganahalli M.N., Maan S., Maan N.S., Tesh R., Attoui H., Mertens P.P.C.; RT ; RL Submitted (29-DEC-2010) to the INSDC. RL Arbovirus Molecular Research Group, Vector Borne Disease Programme, RL Institute for Animal Health, Pirbright Laboratory, Ash Road, Pirbright, RL Woking, Surrey GU24 0NF, United Kingdom XX DR MD5; f5d624fe766518bb8555ddd37356cef5. DR EuropePMC; PMC3163642; 21897849. DR EuropePMC; PMC3236047. XX CC GenBank Accession Numbers HQ842619-HQ842628 represent sequences CC from the 10 segments of Umatilla virus. XX FH Key Location/Qualifiers FH FT source 1..3933 FT /organism="Umatilla virus" FT /segment="1" FT /host="bird" FT /isolate="USA1969/01" FT /serotype="1" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="pool of Culex pipiens mosquitoes" FT /collected_by="John Lazuick, Arbovirus Disease Section, Ft. FT Collins, USA" FT /collection_date="Jul-1969" FT /db_xref="taxon:40060" FT CDS 13..3912 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="VP1" FT /db_xref="GOA:G8DP02" FT /db_xref="InterPro:IPR007097" FT /db_xref="InterPro:IPR008723" FT /db_xref="UniProtKB/TrEMBL:G8DP02" FT /protein_id="AEE98368.1" FT /translation="MAVVGHRLTRTRSTLQKIFKGLIIDGNSAYYLYYKYAPRNNVIGS FT TKSEEEWLQKKNRMYNLPVLQESTWEELFEKTEFNYDQGERALNIYLDSLIEPEDIDPE FT EEFLRNYHMRSEDDSDVVEFIRARSREECAVYGDLSLKYWCALVLDLSAENAHYPIGIQ FT TLKALVTQYGTPFRQNSRDLSKISDEILASTIVLLVEMCITESIIELNAIYRMREIEET FT QIIIGAHKIKLHELMQELFLVCLPHPKKINNMLRAAYSWYVKTLGTASENITYLSSRGG FT DDRNSKDVVYTHFINEKNVYAKMLRVSRFHRDSKKANIQKVVETIEYANSLLTTTKVDL FT PIFRTLMHSVYTDYFDPRQKTHVLFASYLLSLQVISGYGRAWVKNKGDDEEKIMKPDES FT NLVARVCDKTKFFVQKAYDEAKRNGFEIVKPEAMYSSLLRLAKNTSSGMSTTVEVSKSF FT SPRGENKEKVKINSRQKALVIMREGQKIYSSEYLNKKFNTVVDYQTKGSRDVPIKATRT FT IYAIHVSVLAPQLLLTLPLNEYFARHGGPTNPDTNLLSGKVIIGDLEATGSRVMDASDT FT FRNTGDPAIITFALDYSEYDQHMTLFNFRNGLLSGMRSALSCYDTYRYDGYTVNEMIEY FT GYGEGRVQNTLWNGKRAVMRISKDAYDQLPEERKQVPDDAPFRATKPGIKLIDNFEGLE FT SYEGREVVLVSPWDGSDLARVSTHLSGENSTLVANSLHNMAIGSVIQEELAKKFGQTLK FT VLSEMYVGDDTLWYLRFSSLDSGVLDACVDLIFDVVSKVGHEASPAKTTMLPFSAEKTQ FT THAKCGVYIPQDRMMMVSSERIKNIENIQGYMRSNVMTYVTKVSRGFSEELAHRILLFK FT SAILGHRKLKRTIKDTERYRSRYFDSEEDGYTLCIIRDPSILYTPVAWNGYGASPIALN FT IVMTPELYLDILQMPYASEWVAPYSHLVDCHLPPWNETEADTKQIRSNTEMGLFSKLAR FT KAVTATLLDPQLSEAVRTLPLQGFGPHKLSHTMMHSALLKEPRARTLLSTGYELEYQKA FT LNGHSGGKAKLDVAGHDLEISTSYAKIFRIDFGEEIVFNKLEFPDRNLSPRFLLQKLII FT GNRTSSRMRMSYVDKIDSILRGDVVMRGFITSNHIIRLMEDIGSGYNAEDLTTLFSLMN FT LDPKVANRLAEYLTQDRTKFDVQRLAKGGVGGDEFTMSLNLMTTEFVEQLVEYPTQLFQ FT AERDALILHASQIAMTRAALGLPLQKMHFVVTEEHKKELRTVRVRSKLPKRSTVKNLVH FT DVRRLGAGIVEQQFL" XX SQ Sequence 3933 BP; 1307 A; 635 C; 901 G; 1090 T; 0 other; gttttagttg ccatggctgt tgtggggcat cgacttacca ggactcgttc aacgttgcaa 60 aaaatcttca aaggactaat aattgatgga aattcagcat actacttata ttataaatat 120 gcaccacgga ataatgtgat cggatcaaca aaaagcgaag aagaatggct acaaaagaag 180 aatcgaatgt acaatttacc agtactacaa gaatcgacat gggaagagtt gtttgagaag 240 acagaattca attatgatca aggggagcgt gcattgaaca tatatttaga cagtttgatt 300 gagccagaag acatcgaccc cgaagaagag ttcttgcgta attatcacat gagaagcgaa 360 gatgatagtg atgtagttga gtttatacga gcaagaagta gagaggagtg tgccgtttat 420 ggtgatctat cattgaagta ttggtgtgct ttggtattgg atttatctgc tgagaatgca 480 cattatccga taggtattca gacgctgaaa gctttagtca cacaatatgg tacaccattt 540 agacagaatt cacgggattt atcaaagatt tcagatgaaa tacttgcttc aacaattgta 600 ttattggtcg aaatgtgtat tacagagagt ataattgaac taaatgctat atatcgcatg 660 cgtgagattg aggaaacgca gatcataatt ggtgcacata aaataaagtt acacgaattg 720 atgcaagagt tattccttgt atgtttaccg catcctaaga agatcaataa tatgttgcga 780 gctgcttatt cctggtacgt gaaaacttta ggtacagcga gcgaaaatat aacttatctg 840 tcgagccgtg gaggagatga tcgaaattca aaagatgtgg tatatacgca ttttattaat 900 gaaaagaatg tatatgctaa gatgttacgt gtgtcaaggt ttcaccgaga ctcaaagaaa 960 gcgaatatac aaaaagtcgt tgaaacaatc gagtacgcaa atagcttgct aacaacaaca 1020 aaggttgatt tacctatctt tcggacttta atgcatagcg tatatacgga ttatttcgat 1080 ccacgtcaga aaacccacgt tttattcgca tcatatcttc tctcactaca ggtgatttct 1140 ggttatggtc gcgcttgggt taagaataaa ggagatgatg aggaaaaaat tatgaaacca 1200 gacgagagta atctagttgc gcgagtatgt gataagacga aattcttcgt acagaaggcg 1260 tatgatgagg ccaaacgtaa cggttttgaa attgttaaac ctgaagcaat gtacagttca 1320 ttactgcgtt tagcaaaaaa cacatcttcg ggtatgtcta caacggttga ggtgtcaaaa 1380 agtttctccc cgagaggtga aaataaagaa aaggtaaaaa ttaattcaag acagaaggcg 1440 ttagtcatta tgcgtgaagg acagaagata tattcttcgg agtatttaaa caagaaattt 1500 aatacagtag ttgattatca gacgaaaggt tctagagatg taccaattaa agctacgaga 1560 acaatctatg cgatccacgt ctcggtatta gcgcctcagt tattgttaac gttaccgttg 1620 aacgagtatt ttgcgagaca tggagggcca acaaatccgg atacaaattt attaagtggg 1680 aaagtgataa taggagatct agaagcgaca ggttcgagag tgatggatgc gagtgatacg 1740 tttcggaata ctggcgaccc agcaattatc acattcgcat tagattactc ggaatatgat 1800 caacatatga ctttatttaa ttttagaaat ggattattgt ctgggatgcg tagtgcgtta 1860 tcgtgttatg atacttatcg ttacgatggt tatacggtga acgaaatgat tgagtacggc 1920 tatggtgaag gcagagtaca aaatacctta tggaatggaa aacgcgcggt aatgcgcatt 1980 tcgaaagacg catatgacca gcttccagag gaaagaaaac aagtacctga tgatgctcct 2040 ttccgagcaa cgaagccagg aataaaacta attgataatt ttgaaggttt ggagagttat 2100 gaaggtagag aggtagtatt agtttcacct tgggatggaa gtgatttagc aagagtgtca 2160 acacatttat caggagaaaa ctcaacgctc gttgcaaact cattacataa tatggcgatt 2220 ggaagtgtaa tacaggaaga attggcaaag aaatttggtc agactttaaa agtattatct 2280 gagatgtacg tcggggacga cactttatgg tatcttcgtt tttcaagctt ggatagcggc 2340 gttctcgacg cttgtgtcga tttaattttc gatgttgtct caaaggttgg tcatgaagct 2400 tcgcctgcaa aaacgacaat gcttcccttt tcagcggaga aaacacagac tcatgcgaaa 2460 tgtggggtgt atatccctca agaccgaatg atgatggtat cgtctgaacg aattaaaaat 2520 attgagaaca tacagggata tatgcgatca aacgttatga catatgtgac taaagtgagt 2580 cgggggtttt ccgaagagtt agcacataga atattactat ttaaatcagc gattttaggg 2640 catcgaaagc tgaaacgtac cattaaagat acagaacggt atagatcgag atatttcgat 2700 tcagaggaag atggttatac attatgtatt attcgtgatc caagcatttt atatacaccg 2760 gtagcatgga atggatatgg tgcttcacca atcgcactga acatcgtaat gacgcctgaa 2820 ctatatttag atatattaca aatgccatac gcaagcgaat gggtagcgcc ttattctcat 2880 ttagttgact gtcatttacc accttggaat gagactgaag cggatacaaa acaaataagg 2940 tctaatacgg aaatgggttt gttctcaaaa ttagcgagaa aggcagtaac tgcgacgcta 3000 ttggatcccc agctatcaga agctgttaga acattaccat tacaaggttt tggtcctcat 3060 aagctatcgc ataccatgat gcatagcgca ttattaaaag aaccgcgagc gcgtacgctc 3120 ttgtctaccg gttacgaatt agaatatcag aaagctttaa acggacattc aggtggaaag 3180 gcgaaattag atgtagctgg tcatgacctt gaaatttcaa catcatatgc gaaaatattc 3240 agaattgatt ttggagaaga gatcgtgttt aataagcttg aatttcctga taggaattta 3300 tctccacgat ttctactaca aaagttgatc attggaaata ggacttcgag tagaatgcgc 3360 atgtcatatg ttgataaaat tgattcaatt ttaagaggag atgtggttat gagggggttt 3420 ataacatcaa atcatataat tcgtttgatg gaagatattg gtagcggtta taacgcagag 3480 gatctaacga ctcttttttc attgatgaat ttagatccaa aagtcgcgaa cagactggct 3540 gaatacttga ctcaagatcg aactaagttc gacgttcagc gattagcgaa gggaggagtg 3600 ggcggagacg aatttacaat gtctttaaat ctaatgacga ccgaatttgt agaacaactt 3660 gtagaatatc cgacacaact tttccaagca gagcgtgacg cgctaatact ccacgcaagt 3720 cagatcgcta tgacacgcgc ggcgttagga ttaccattgc aaaagatgca ctttgtagtc 3780 actgaggaac ataaaaagga gttgagaacg gttagggtgc gctcaaagct cccgaaacgc 3840 agcacagtaa agaatttagt acatgatgtc cgaagattgg gagcaggcat cgttgaacag 3900 cagtttctgt agtcgagagg caacaaaaga tac 3933 //