ID   HQ840737; SV 1; linear; genomic DNA; STD; VRL; 1207 BP.
XX
AC   HQ840737;
XX
DT   31-MAY-2011 (Rel. 109, Created)
DT   31-MAY-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Jatropha mosaic India virus-[Lucknow] coat protein (AV1) gene, partial cds;
DE   replication enhancer protein (AC3) and transcriptional activator protein
DE   (AC2) genes, complete cds; and replication-associated protein (AC1) gene,
DE   partial cds.
XX
KW   .
XX
OS   Jatropha mosaic India virus-[Lucknow]
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1207
RA   Raj S.K., Srivastava A., Snehi S.K.;
RT   "Molecular characterization of a begomovirus causing mosaic disease on
RT   Jatropha curcas L. in India";
RL   Unpublished.
XX
RN   [2]
RP   1-1207
RA   Raj S.K., Srivastava A., Snehi S.K.;
RT   ;
RL   Submitted (30-DEC-2010) to the INSDC.
RL   Plant Molecular Virology, National Botanical Research Institute, Rana
RL   Pratap Marg, Lucknow, U.P. 226001, India
XX
DR   MD5; 36eb0ebb777aed746ebd8152ee6e65d9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1207
FT                   /organism="Jatropha mosaic India virus-[Lucknow]"
FT                   /segment="DNA-A"
FT                   /host="Jatropha curcas L."
FT                   /strain="3"
FT                   /isolate="Lucknow"
FT                   /mol_type="genomic DNA"
FT                   /country="India"
FT                   /collected_by="S. K. Snehi"
FT                   /collection_date="13-Oct-2010"
FT                   /identified_by="Dr. S. K. Raj"
FT                   /clone="JC-5"
FT                   /db_xref="taxon:569949"
FT   gene            <1..387
FT                   /gene="AV1"
FT   CDS             <1..387
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /note="involved in encapsidation of virion"
FT                   /db_xref="GOA:F6L740"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:F6L740"
FT                   /protein_id="AEF65941.1"
FT                   /translation="KNHTNSVMFFLVRDRRPVDKPQDFGVVFNMFDNEPSTATVKNMHR
FT                   DRYQVLRKWTATVTGGQYASKEQALVRRFFRVNNYVIYNQQEAGKYENHAENALMLYMA
FT                   CTHASNPVYATLKIRIYFYDSVSN"
FT   gene            complement(384..788)
FT                   /gene="AC3"
FT   CDS             complement(384..788)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /note="increases viral replication"
FT                   /db_xref="GOA:F6L741"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:F6L741"
FT                   /protein_id="AEF65942.1"
FT                   /translation="MDSFFGELITAAQATSGVFYWEPPNPLYFKITDHSSLPFSMTYDI
FT                   ITVPIRFCYTLRKALGLHQCWMDFKIWTALHPQTGRFLRVFNYQVLKYLDMLGVISINN
FT                   VVKAVEHVMYNVLTKTASIEQASIIKFNFY"
FT   gene            complement(529..936)
FT                   /gene="AC2"
FT   CDS             complement(529..936)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcriptional activator protein"
FT                   /db_xref="GOA:F6L742"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:F6L742"
FT                   /protein_id="AEF65943.1"
FT                   /translation="MRPSSPSTGHSTPVPIKAKHRAAKRRAIRRRRVDLNCGCSYYVHI
FT                   NCHNHGFVLWGTHHCSSSDEWRVLLGAPQSPLFQNHRPQQPAVQYDLRHYYRPDTVLLH
FT                   PEESVGTTSMLDGFQNLDSLTSSDWAFLESI"
FT   gene            complement(866..>1207)
FT                   /gene="AC1"
FT   CDS             complement(866..>1207)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="replication-associated protein"
FT                   /db_xref="GOA:F6L743"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="UniProtKB/TrEMBL:F6L743"
FT                   /protein_id="AEF65944.1"
FT                   /translation="LCGHLDLSPRVYSNDAWYNVIDEIDPHYLKHFKEFKWAQRDWQSN
FT                   TKYGKPVQIKGGIPTIFLRNPGPNSSYKEFLDEPKNTALKAWAIRNATFISLDGPLYSS
FT                   ADQGQTQGS"
XX
SQ   Sequence 1207 BP; 304 A; 259 C; 292 G; 352 T; 0 other;
     aaaaatcaca ccaatagtgt gatgtttttc cttgtcaggg atcgtaggcc tgtggataag        60
     ccccaggatt tcggggtagt cttcaacatg ttcgataatg agcccagtac agcaactgtg       120
     aaaaacatgc atcgtgatcg ctatcaagtg ctcaggaagt ggactgctac ggtgactggt       180
     ggtcagtacg caagcaagga gcaggcttta gttaggcgtt tttttagggt caataattat       240
     gtaatttaca atcagcaaga ggctggcaaa tatgagaatc acgctgagaa tgcgttgatg       300
     ctctacatgg cgtgtactca cgcctccaac cccgtgtatg caacgcttaa gattagaatc       360
     tatttttatg actctgtatc aaattaataa aaattaaatt ttattatact ggcctgctcg       420
     atactggcag tttttgttaa tacattgtac attacatgtt ctacagcctt tacaacgtta       480
     tttattgaaa taacccctag catatctagg tatttaagta cttggtaatt aaatactctc       540
     aagaaacgcc cagtctgagg atgtaaggct gtccagattt tgaaatccat ccagcattga       600
     tgtagtccca acgctttcct cagggtgtag cagaaccgta tcgggacggt aataatgtcg       660
     taggtcatac tgaacggcag gctgctgtgg tctgtgattt tgaaatagag gggattgggg       720
     ggctcccagt aaaacacgcc actcgtcgct tgagctgcag tgatgagttc cccaaagaac       780
     gaatccatgg ttgtggcagt tgatgtgcac gtagtacgag cacccgcagt tgaggtctac       840
     tctccgtcgc cggatggccc tacgcttagc tgccctgtgt ttggccttga tcggcactgg       900
     agtagagtgg cccgtcgagg gagatgaagg tcgcatttct tattgcccaa gcctttagtg       960
     ccgtattctt cggctcatct aggaactctt tatagctgga attgggccca ggatttctca      1020
     gaaagatagt gggtattccc cctttaattt gaactggctt gccgtacttg gtgttgcttt      1080
     gccagtctct ctgggcccac ttaaattcct tgaagtgctt gagataatgc ggatctattt      1140
     catcaatgac gttgtaccac gcgtcgttgc tgtagaccct aggactcaag tccagatgtc      1200
     cacatag                                                                1207
//