ID HQ839729; SV 1; linear; genomic RNA; STD; VRL; 2926 BP. XX AC HQ839729; XX DT 18-JUL-2011 (Rel. 109, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate p105-RB-Mar segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-2926 RX PUBMED; 24623427. RA Margaria P., Bosco L., Vallino M., Ciuffo M., Mautino G.C., Tavella L., RA Turina M.; RT "The NSs protein of tomato spotted wilt virus is required for persistent RT infection and transmission by Frankliniella occidentalis"; RL J. Virol. 88(10):5788-5802(2014). XX RN [2] RP 1-2926 RA Margaria P., Ciuffo M., Mautino G., Bosco L., Tavella L., Turina M.; RT "Genetic evidence for a role of the NSs protein of TSWV for its efficient RT transmission by the thrips vector Frankliniella occidentalis"; RL Unpublished. XX RN [3] RP 1-2926 RA Margaria P., Ciuffo M., Mautino G., Bosco L., Tavella L., Turina M.; RT ; RL Submitted (29-DEC-2010) to the INSDC. RL Istituto di Virologia Vegetale, CNR Torino, Italy, Strada delle Cacce 73, RL Torino, TO 10135, Italy XX DR MD5; 889bf20180d77deca9d9e021bd4f67c6. DR EuropePMC; PMC4019118; 24623427. XX FH Key Location/Qualifiers FH FT source 1..2926 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="pepper" FT /isolate="p105-RB-Mar" FT /mol_type="genomic RNA" FT /country="Italy" FT /collection_date="Oct-2010" FT /db_xref="taxon:3052585" FT CDS 89..1420 FT /codon_start=1 FT /product="truncated silencing suppressor" FT /note="truncated NSs" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:G0YW88" FT /protein_id="AEK21292.1" FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSQLVQTQ FT LYSDSRSKSSFGYTAKVGDLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT FT VNANGVKHQGHLKVLSPAQLHSIGSIMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPNFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFRLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI FT ACIPNYNSVETALNITVICKHQLPIRKFKAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNHELTPGKLDLGEKTLNYSEDAYKRKYFLSKT FT LECLPSNTQTMSYLDSIQIPSWKIDLPGEKLKFLRNLFQLQNLC" FT variation 1361..1362 FT /replace="ttt" FT /note="single nucleotide deletion" FT CDS complement(1999..2775) FT /codon_start=1 FT /product="nucleocapsid" FT /note="Nc" FT /db_xref="GOA:Q88910" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q88910" FT /protein_id="AEK21291.1" FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA" XX SQ Sequence 2926 BP; 926 A; 548 C; 469 G; 983 T; 0 other; agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat cacaatactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttatgagt cgatcattca 120 gacaagagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggtactg gttctcaact agttcagacc caactgtatt ctgattcaag 240 aagcaaaagt agctttggct atactgcaaa agtaggggat cttccttgtg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcatcaatat 360 tgatgactct gttctggcat tatctgtttg ctcaaataca gtcaatgcta atggagtgaa 420 acatcaaggt catttgaagg ttttgtctcc tgctcagctc cactctattg gatctatcat 480 gaacagatct gatattacgg atcgattcca gctccaagaa aaagatataa ttcccaatga 540 cagatacatt gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa 600 gatcgagatg tgctataatc aagctttagg caaagtgaat gttctatctc ctaatagaaa 660 tgtccatgaa tggctgtaca gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtgaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 780 taactctcaa gcttttgtca aagcttccac tgattctcat ttcaggctga gcctctggct 840 aagggttcca aaggttttga agcagatttc cattcagaaa ttgttcaagg ttgcaggaga 900 tgaaacaaat aaaacatttt atttatctat tgcctgcatt ccaaactata acagtgttga 960 gacagcttta aacattactg ttatttgcaa acatcagctc ccaattcgta aatttaaagc 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat ccccaaagga ttgttcatgc tctgcttgaa actcacacat cttttgcaca 1140 agttctttgc aacaacttgc aagaagatgt gatcatctac accttgaaca accatgagct 1200 aactcctgga aagttagatt taggtgaaaa aaccttgaat tacagtgaag atgcctacaa 1260 aaggaaatat ttcctttcaa aaacacttga atgtcttcca tctaacacac aaactatgtc 1320 ttatttagac agcatccaaa tcccttcctg gaagatagac ttgccagggg agaaattaaa 1380 atttctccgc aatctatttc agttgcaaaa tctttgttaa agcttgattt aagcgggatc 1440 aaaaagaaag aatctaagat taaggaagca catgcttcag gatcaaaatg atcttgctgt 1500 gtccagcttt ttctaattat gttatgttta ttttcctcct ttacttataa ttatttctct 1560 gtttgtcatt tctttcaaat tcctcctgcc tagtagaaac cataaaaaca aaaataaaaa 1620 taaaataaaa tcaaaataaa ataaaaatca aaaaatgaaa taaaacaaca aaaaattaaa 1680 aaacaaaaaa ccaaaaaaga tcccgaaagg gacaattttg gccaaatttg ggttttgttt 1740 ttgttttttg ttttttgttt tttgtttttt atttttattt tttatttttt attttacttt 1800 attttatttt tatttgtttt tattttatgt ttttttgttg gttttttatt atgttattta 1860 ttaagcacaa cacacagaaa gcaaacttta attaaacaca cttatttaaa atttaacaca 1920 ctaagcaagc acaagcaata aagataaaga aagctttata tatttatagg ttttttataa 1980 tttaacttac agctgctttt aagcaagttc tgcgagtttt gcctgttttt taaccccaaa 2040 catttcatag aacttgttaa gagtttcact gtaatgttcc atagcaatac ttcctttagc 2100 attaggattg ctggagctaa gtatagcagc atactctttc cccttcttca cctgatcttc 2160 attcatttca aatgctttgc ttttcagcac agtgcaaact ttccctaagg cttccctggt 2220 gtcatacttc tttgggtcga tcccaaggtc cttgtatttt gcatcctgat atatagccaa 2280 gacaacactg atcatctcaa agctatcgac tgaagcaata agaggtaagc tacctcccag 2340 cattatggca agcctcacag actttgcatc atcaagaggt aatccatagg cttgaatcaa 2400 agggtgggaa gcaatcttag atttgatagt attgagattc tcggaattcc cagtttcctc 2460 aacaagcctg accctgatca agctatcaag ccttctgaag gtcatgtcag tggctccaat 2520 cctgtctgaa gttttcttta tggtaatttt accaaaagta aaatcacttt gcttaataac 2580 cttcattatg ctctgacgat tcttcaggaa tgtcagacat gaaataacac tcatcttttt 2640 gatctggtca aggttttcca gacaaaaagt cttgaagttg aatgctacca gattctgatc 2700 ttcctcaaac tcaaggtctt tgccttgtgt caacaaagca acaatgcttt ccttagtgag 2760 cttaacctta gacatgatga tcgtagaagt tgttatatgc tttgaccgta tgtaactcaa 2820 ggtgcaaaag tacaactctg tatcccgcag tcgtttctta gggttttaat gtgatgattt 2880 gtaagactga gtgttaaggt ttgaataaaa ttgacacaat tgctct 2926 //