ID HQ830187; SV 1; linear; genomic RNA; STD; VRL; 2963 BP. XX AC HQ830187; XX DT 18-JUL-2011 (Rel. 109, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate p202/3WT segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-2963 RX PUBMED; 24623427. RA Margaria P., Bosco L., Vallino M., Ciuffo M., Mautino G.C., Tavella L., RA Turina M.; RT "The NSs protein of tomato spotted wilt virus is required for persistent RT infection and transmission by Frankliniella occidentalis"; RL J. Virol. 88(10):5788-5802(2014). XX RN [2] RP 1-2963 RA Margaria P., Ciuffo M., Mautino G., Bosco L., Tavella L., Turina M.; RT "Genetic evidence for a role of the NSs protein of TSWV for its efficient RT transmission by the thrips vector Frankliniella occidentalis"; RL Unpublished. XX RN [3] RP 1-2963 RA Margaria P., Ciuffo M., Mautino G., Bosco L., Tavella L., Turina M.; RT ; RL Submitted (24-DEC-2010) to the INSDC. RL Istituto di Virologia Vegetale, CNR Torino, Italy, Strada delle Cacce 73, RL Torino, TO 10135, Italy XX DR MD5; c1a6d13df8aa2def593a9795a033af31. DR EuropePMC; PMC4019118; 24623427. XX FH Key Location/Qualifiers FH FT source 1..2963 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="pepper" FT /isolate="p202/3WT" FT /mol_type="genomic RNA" FT /country="Italy" FT /collection_date="1999" FT /db_xref="taxon:3052585" FT CDS 89..1492 FT /codon_start=1 FT /product="silencing suppressor" FT /note="NSs" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:G0YUQ6" FT /protein_id="AEK21289.1" FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ FT LYSDSRSKSSFGYTAKVGNLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPSFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQVSIQKLFKVAGDETNKIFYLSI FT ACIPNHNSVETALNISVICKHQLPIRKCKAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNYELTPGKLDLGERTLNYSEDICKRKYFLSKT FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQPVSVAKSLLKLDLSGIEKKESKI FT PETYASGSK" FT CDS complement(2036..2812) FT /codon_start=1 FT /product="nucleocapsid" FT /note="Nc" FT /db_xref="GOA:Q88910" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:Q88910" FT /protein_id="AEK21290.1" FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA" XX SQ Sequence 2963 BP; 936 A; 547 C; 476 G; 1004 T; 0 other; agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat cacaatactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttatgagt cgatcattca 120 gacaagagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggcactg gttctccact agttcaaacc cagctgtatt ctgattcaag 240 aagcaaaagt agctttggct atactgcaaa ggtagggaat cttccctgtg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcattaatat 360 tgatgactct gttctggcac tatctgtttg ctcaaataca gtcaatacta atggagtgaa 420 acatcaaggt catttgaaag ttttgtctcc tgctcagctc cactctattg gatctaccat 480 gaacagatct gatattacag accgattcca gcttcaagaa aaagacataa ttcccaatga 540 cagatacatc gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa 600 gatcgagatg tgctataatc aagctttggg caaagtgaat gttttatccc ctaacaggaa 660 tgttcatgaa tggctgtaca gtttcaagcc aagtttcaat caagttgaaa gcaacaacag 720 aactgtaaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 780 taactctcag gcttttgtca aagcttccac tgattctcat ttcaaactga gcctctggct 840 aagggtccca aaggttctga agcaggtctc tattcagaaa ttgttcaaag ttgcaggaga 900 cgaaacaaat aaaatatttt atttatctat tgcttgcatt ccaaaccata acagtgttga 960 gacagcttta aacatttctg ttatttgcaa gcatcagctc ccaattcgta aatgtaaagc 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat cctcagagga ttgttcatgc tctgcttgaa actcacacat cttttgcaca 1140 agttctttgc aacaacttac aagaagatgt gatcatctac actttgaaca actatgagct 1200 aactcctgga aagttagatt taggtgaaag aaccttaaat tacagtgaag atatctgcaa 1260 aaggaaatat ttcctttcaa aaacacttga atgtcttcca tctaacacac aaactatgtc 1320 ttacttggac agcatccaaa tcccttcctg gaagatagac tttgccaggg gagaaattaa 1380 gatttcccca caacctgttt cagttgcaaa atctttgtta aagcttgatt taagcgggat 1440 cgaaaagaaa gaatctaaga ttccggaaac atatgcttca ggatcaaaat aatcttgctg 1500 tgtccggttt ttctaattat gttatgttta ttttctttct ttacttataa ttatttctct 1560 gttttgtcat ttcttttaag ttcctcctgt ttaatagaaa ccataaaaca aaaaataaaa 1620 taaaaataaa attaaaaatg aaacaaaaat caaaaatgaa acaaaaataa aaaataaaaa 1680 atgaaataaa aacaacaaaa aaattaaaaa acaaaaaccc aaaaaagatc ccgaatggga 1740 caatcttggc caaatttggg ttttgttttg tttttgtttt ttgttttttg tttttatttt 1800 tattttattt atttatttta ttttattttt gttttttatt ttttattttg ttttttattt 1860 tatgtttttt cttgtttttg ttattttgtt tatttattaa gcataacaca cagaaagcaa 1920 actttaatta aacacactta ttttaaattt aacacactaa gcaagcacaa gcaataaaga 1980 taaagaaagc tttatatatt tgtagacttt tccataattt aacttacagc tgatttcaag 2040 caagttctgc gagttttgcc tgttttttaa ccccgaacat ttcatagaac ttgttaagag 2100 tttcactgta atgttccata gcaatacttc ctttagcatt aggattgctg gagctgagta 2160 tagcagcata ctcttttcct ttcttcacct gatcttcatt catttcaaat gctttgcttt 2220 tcagcacagt gcaaactttt cctaaggctt ctctggtgtc atacttcttt gggtcaatcc 2280 cgaggtcttt gtattttgca tcctgatata tagccaagac aacactgatc atctcaaagc 2340 tatcaactga agcaataaga ggtaagctac ctcccagcat tatggcaagc ctcacagact 2400 ttgcatcatc aagaggtaat ccataggctt gaatcaaagg gtgggaagca atcttagatt 2460 tgatagtatt gagattctca gaattcccag tttcctctac aagcctgacc ctgatcaagc 2520 tatcaagcct tctgaaggtc atgtcagtgg ctccaatcct gtctgaagtt ttctttatgg 2580 taattttacc aaaagtaaaa tcactttgtt taataacctt cattatactc tgacgattct 2640 tcaggaatgt cagacatgaa ataacgctca tcttcttgat ctggtcgagg ttttccagac 2700 aaaaagtctt gaagttgaat gctaccagat tctgatcttc ctcaaactca aggtctttgc 2760 cttgtgtcaa caaagcaaca atgctttcct tagtgagctt aaccttagac atgatgattg 2820 tagaagttgt tatatgcttt gaccgtatgt aattcaaggt gcgaaagtgc aactctgtat 2880 tccgcagtcg tttcttaggg ttttaatgtg atgatttgta agactgagtg ttaaggtttg 2940 aataaaattg acacaattgc tct 2963 //