ID   HQ830171; SV 1; linear; viral cRNA; STD; VRL; 1744 BP.
XX
AC   HQ830171;
XX
DT   01-JUN-2011 (Rel. 109, Created)
DT   01-JUN-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Phlebovirus JS6 segment S, complete sequence.
XX
KW   .
XX
OS   Phlebovirus JS6
OC   Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes;
OC   Bunyavirales; Phenuiviridae; Phlebovirus.
XX
RN   [1]
RP   1-1744
RA   Shan J., Zhao K.C., Cui L.B., Qi X., Shi Z.Y., Tang F.Y., Zhou M.H.,
RA   Jiao Y.J., Guo X.L., Wang H.;
RT   "Genetic characteristics of novel Phlebovirus related to epidemic fever
RT   with thrombocytopenia syndrome in Jiangsu, China";
RL   Unpublished.
XX
RN   [2]
RP   1-1744
RA   Shan J., Zhao K.C., Cui L.B., Qi X., Shi Z.Y., Tang F.Y., Zhou M.H.,
RA   Jiao Y.J., Guo X.L., Wang H.;
RT   ;
RL   Submitted (27-DEC-2010) to the INSDC.
RL   Institute of Pathogen Microbiology, Jiangsu Provincial Center for Disease,
RL   172 Jiangsu Road, Nanjing, Jiangsu 210009, China
XX
DR   MD5; e2b669228d65cb6ad22c01b5d851b794.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1744
FT                   /organism="Phlebovirus JS6"
FT                   /segment="S"
FT                   /host="Homo sapiens"
FT                   /strain="JS6"
FT                   /mol_type="viral cRNA"
FT                   /country="China"
FT                   /isolation_source="serum"
FT                   /collection_date="11-Oct-2010"
FT                   /db_xref="taxon:1010665"
FT   CDS             29..910
FT                   /codon_start=1
FT                   /product="non-structural protein"
FT                   /db_xref="UniProtKB/TrEMBL:F6L6N2"
FT                   /protein_id="AEC50110.1"
FT                   /translation="MSLSKCSNVDLKSVAMNANTVRLEPSLGEYPTLRRDLVECSCSVL
FT                   TLSMVKRMGKMTNTVWLFGNPKNPLHQLEPGLEQLLDMYYKDMRCYSQRELSALRWPSG
FT                   KPSVWFLQAAHMFFSIKNSWAMETGRENWRGLFHRITKGQKYLFEGDMILDSLEAIEKR
FT                   RLRLGLPEILITGLSPILDVALLQIESLARLRGMSLNHHLFTSSSLRKPLLDCWDFFIP
FT                   IRKKKTDGSYSVLDEDDEPGVLQGYPYLMAHYLNRCPFHNLIRFDEELRTAALNTIWGR
FT                   DWPAIGDLPKEV"
FT   CDS             complement(965..1702)
FT                   /codon_start=1
FT                   /product="nucleocapsid protein"
FT                   /db_xref="GOA:F6L6N3"
FT                   /db_xref="InterPro:IPR009522"
FT                   /db_xref="InterPro:IPR015971"
FT                   /db_xref="UniProtKB/TrEMBL:F6L6N3"
FT                   /protein_id="AEC50111.1"
FT                   /translation="MSEWSRIAVEFGEQQLNLTELEDFARELAYEGLDPALIIKKLKET
FT                   GGDDWVKDTKFIIVFALTRGNKIVKASGKMSNSGSKRLMALQEKYGLVERAETRLSITP
FT                   VRVAQSLPTWTCAAAAALKEYLPVGPAVMNLKVENYPPEMMCMAFGSLIPTAGVSEATT
FT                   KTLMEAYSLWQDAFTKTINVKMRGASKTEVYNSFRDPLHAAVNSVFFPNDVRVKWLKAK
FT                   GILGPDGVPSRAAEVAAAAYRNL"
XX
SQ   Sequence 1744 BP; 436 A; 434 C; 409 G; 465 T; 0 other;
     acacaaagac ccccttcatt tggaaaccat gtcgctgagc aaatgctcca acgttgacct        60
     caaatctgta gcaatgaatg ctaacactgt taggcttgag ccttccctgg gagagtaccc       120
     cactcttagg agagacctcg ttgaatgctc ttgtagtgtg ttgactttgt caatggtcaa       180
     gaggatgggt aagatgacca acacagtatg gttgtttggc aaccctaaaa atcctcttca       240
     tcagcttgag cctggacttg agcagctgtt agacatgtac tacaaggaca tgaggtgcta       300
     ctcccagaga gaactgagtg ctcttaggtg gcctagtggg aagccatctg tatggttcct       360
     acaggcagct catatgttct tctccatcaa gaacagctgg gcaatggaaa ccggaagaga       420
     gaattggcgg ggcctcttcc acaggataac aaaaggccaa aagtatcttt ttgaagggga       480
     catgatattg gattctcttg aagccataga gaagcgaaga cttagacttg ggttgcctga       540
     gattctgata actggtctat ccccaattct ggatgtggct ctcctccaga tagaatcact       600
     tgcaaggcta agaggcatga gcttgaacca ccacttgttc acttcttcct cattgcgtaa       660
     gcctctgtta gactgttggg atttcttcat tcctatccgc aaaaagaaga cagatggctc       720
     atacagtgtc ttggatgagg atgatgagcc tggggtcctc cagggttacc catatctgat       780
     ggcacactat ttaaataggt gcccattcca caacctcatc aggtttgatg aagaactgag       840
     aactgcagcc ctgaacacca tttggggaag agattggcca gccattggtg acctcccgaa       900
     ggaggtctaa ttttgtcgaa ttggatcatg gaatttagcc taattggata tatcaaattg       960
     ctgcttacag gtttctgtaa gcagcagcag caacctcagc agctctgctg ggaaccccat      1020
     ctgggccaag gattcccttg gccttcagcc acttcacccg aacatcattg ggaaagaaga      1080
     cagagttcac agcagcatgg agagggtccc tgaaggagtt gtaaacttct gtcttgctgg      1140
     ctccacgcat cttcacattg atagtcttgg tgaaggcatc ttgccacaga gagtaggcct      1200
     ccataagggt cttggttgtg gcttcagata ctcccgcagt tggaatcagg gatccaaagg      1260
     ccatgcacat catctcaggt ggataattct caaccttcag gttcatgacg gctggcccca      1320
     ctgggagata ctcctttaag gctgctgctg ctgcacatgt ccaggtggga aggctctgcg      1380
     ctaccctcac aggagtgatt gagagcctgg tttctgccct ctcaaccagt ccatatttct      1440
     cttggagtgc catcaacctc ttagaccctg agttagacat tttccctgat gccttgacga      1500
     tcttattgcc tcgagtcagg gcaaagacaa tgatgaactt cgtatccttc acccaatcat      1560
     ctccacctgt ctccttcagc ttcttgataa tcaaagcagg atcaaggcct tcataggcca      1620
     gctctctcgc gaaatcctca agctcagtca aattgagctg ctgctcacca aactccactg      1680
     caatcctgga ccactctgac atgatcactc ctttgcgtct ttcctttttt gggggtcttt      1740
     gtgt                                                                   1744
//