ID HQ731496; SV 1; linear; genomic RNA; STD; VRL; 3167 BP. XX AC HQ731496; XX DT 03-APR-2013 (Rel. 116, Created) DT 04-JUN-2013 (Rel. 117, Last updated, Version 2) XX DE Rice black-streaked dwarf virus 2 isolate V segment S5, complete sequence. XX KW . XX OS Rice black-streaked dwarf virus 2 OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RC Publication Status: Online-Only RP 1-3167 RX PUBMED; 23704174. RA Xue J., Li J., Ta H.A., Zhang H.M., Yang J., Lv M.F., Meng Y., Li P.P., RA Chen J.P.; RT "Complete genomic sequence of southern rice blacked-dwarf virus, a novel RT fijivirus, from Vietnam"; RL Genome Announc 1(3):E00212-13(2013). XX RN [2] RP 1-3167 RA Zhang H.; RT ; RL Submitted (20-DEC-2010) to the INSDC. RL Institution of Virology and Biotechnology, Zhejiang Academy of Agricultural RL Sciences, 198 Shiqiao Road, Hangzhou, Zhejiang 310021, China XX DR MD5; 7b2ecd131a94f9664665d1f75087baf9. XX CC GenBank Accession Numbers HQ731492-HQ731501 represent sequences CC from the 10 segments of Rice black-streaked dwarf virus 2. XX FH Key Location/Qualifiers FH FT source 1..3167 FT /organism="Rice black-streaked dwarf virus 2" FT /segment="S5" FT /isolate="V" FT /mol_type="genomic RNA" FT /country="Viet Nam" FT /isolation_source="rice" FT /db_xref="taxon:566568" FT CDS 16..2835 FT /codon_start=1 FT /product="minor structural protein P5-1" FT /db_xref="GOA:M4GP41" FT /db_xref="UniProtKB/TrEMBL:M4GP41" FT /protein_id="AEV91049.1" FT /translation="MTYLKVKMTTDPSEMSLKKVLFNPTNEIRILNHEQADNTLLTTLM FT IIHDFEDTHTRDSILPQIVNEEKAEFDRTIESILEEVSDAFVANYHKILEENAKLGNPL FT APNYKNVVSVETCIPGLEKLFVDRERWELFTRLYRLDRKMSQKYPLEKMLKGNFLNISI FT SDETYYEYVSAMIIVFEVFLCVITVNSVYGGLIFSALNLMSGGHNYIPILGLLLHAIVQ FT AVKIYLDKSAANQIEEKTTSYVDKVTNHDVKDVMIDDTMFIFVDKPKEPIFQNFDISLK FT VHTHKSSAFQPFKTGFNALLTKIIRIHKIKGEILKVGYIDGISRDELIGASGKKLSYSE FT RHAIGIKYDQETKTLFISHPILRDAFERLNKLSLLHDNLLLKDDFANIPSDFFTVDFNE FT PDSVSDYVVPFLNNADLKFSTQMSYNWRSINTEKRPYCFLKEGTSVNFYDPIFECFFPN FT HFIKIVKKDAITIDPTKVVTEDDMIHFGRLVERHEDLTYNKTTAYSILKFLNENCHSCG FT CSEYFANFVSDYLTSIDVLNHMKDSKLSKVEYHLKQEYENLFKKTKRQELSKTPIAEHS FT DFLSQCAYNESFFDIDFCFLEDGDCHSLVIRFAKRKPYFRFKDENLEKLNVLSLYDLVV FT NCNHGELSSSSRVGWNLVDIDNMGSDDNLNRTIRRTNSKPRHFTYDLMMITFTGSVTQY FT LIPEWLGESLTVYEEKHEGARLFEKSSLFSTLSCIPATFLANHILIECLEKSSNKLISF FT MDGVISAMSTSIEFSTFKNTMLNNLKRCTQASEMNVAKQSPIAGTSRNKSFRSYLRSSR FT PNHVYDALSYCISKKQNGLFTSEEMCMSYNLRSFGKVGVDYSNGELSYDISSREELYNN FT HPCALRLRNLGHFVFGKHFRCKVCRNNYGTSFELSLCQLGHQETAIEAVRSNTITSQIR FT AKLQPTTAR" FT CDS 2459..3076 FT /codon_start=1 FT /product="nonstructural protein P5-2" FT /db_xref="UniProtKB/TrEMBL:M4GP44" FT /protein_id="AEV91050.1" FT /translation="MSMTRCPIVSPRNRTGCSHQKKCACLIISDHLEKWELTIATVNCH FT MISRQEKSCTTIIPVRFDLEISDILSLENILDAKYVATITELALNFPCVNWDIKKQQLK FT QFDPTQSLVKLEQNFNQLQRDDKLHFNCCYNYPALHILNRILNVSKDVIPFLFDHNHNA FT NNKTMSDLSSTLNNCRDMKVSERHHSLRTLLFGSTLGVILHV" XX SQ Sequence 3167 BP; 994 A; 632 C; 573 G; 968 T; 0 other; aagttttttt cactcatgac atatttgaaa gtgaagatga ccacagatcc ttccgaaatg 60 tctctgaaaa aagtgctttt caacccaacg aacgaaatcc gaattctcaa ccacgaacaa 120 gcagacaaca ctcttttgac cacactgatg attattcacg actttgaaga cacccacact 180 cgtgactcaa ttctgcccca aattgtcaat gaagaaaaag ccgaattcga ccgaactatt 240 gaatccattc ttgaagaagt tagcgatgcc tttgttgcta attatcacaa aattctcgaa 300 gaaaacgcga aattgggtaa ccctcttgct ccaaattata aaaacgtcgt gtctgtagaa 360 acatgtattc caggtcttga aaaacttttt gttgatcgcg agagatggga actgtttacc 420 cgtttgtatc ggctagatcg aaaaatgagt caaaaatatc ctctagagaa gatgctaaaa 480 ggcaatttcc ttaacatttc catttccgac gaaacttatt atgagtacgt ttccgctatg 540 atcatagttt ttgaagtgtt tctttgtgtt ataactgtca acagtgttta cggtggcttg 600 atctttagtg ctttgaactt gatgagcggc ggacataact acattcctat tcttggccta 660 cttttacatg ctattgttca agctgtaaaa atttatttgg ataaatcagc tgcgaatcaa 720 attgaagaaa agactacttc ctacgtagac aaagtgacaa accacgacgt taaagacgtt 780 atgattgatg acaccatgtt tatttttgtt gataaaccaa aagaaccaat attccaaaat 840 ttcgacatca gtttaaaagt tcatactcac aaatcatctg cttttcaacc ttttaaaacc 900 ggtttcaatg ctcttttaac taaaatcatt cgtattcaca aaatcaaagg tgaaattctc 960 aaagttggtt acattgatgg aatcagtcgt gacgaattga ttggcgcatc aggaaagaaa 1020 ctctcgtatt ctgaaagaca tgccattgga attaagtatg atcaggaaac caagacattg 1080 ttcatcagtc accccattct acgagatgct tttgagcgtt tgaacaagct ttcgctattg 1140 catgataacc ttctgttgaa agacgacttc gctaacattc cgtctgattt tttcactgtt 1200 gattttaatg agccagattc tgtcagtgat tacgtagttc ccttcttgaa taatgctgat 1260 ttgaagtttt ccactcaaat gtcgtacaac tggagaagca ttaacacgga aaaaagacct 1320 tactgcttct tgaaagaagg aactagcgtg aacttttacg atccaatttt tgaatgcttt 1380 tttccaaacc atttcatcaa aattgtcaaa aaagacgcaa ttaccattga tcctacgaaa 1440 gttgtaactg aagatgacat gatccatttt ggacggttgg ttgaaagaca tgaagatttg 1500 acgtacaaca agactactgc ttattccatc ttgaaatttt tgaatgaaaa ttgccacagt 1560 tgtggttgtt ctgaatattt cgccaatttc gtttctgatt acttaacatc aatcgacgtt 1620 cttaatcaca tgaaggattc aaaattatca aaggtcgaat atcatctcaa gcaggaatac 1680 gaaaacttgt tcaagaagac aaaaagacaa gagctttcaa aaacgccgat tgctgaacat 1740 tcagatttcc tctctcaatg cgcatataac gagtctttct tcgatatcga tttttgcttc 1800 ctggaagatg gtgactgtca ttcactcgtc attcgattcg ctaaacgcaa accttacttt 1860 cgcttcaaag acgaaaactt ggaaaagctc aacgttctgt ccctgtacga tcttgtggtg 1920 aattgtaatc acggagaact ttcttcatct agcagagttg gatggaattt ggttgacatt 1980 gacaacatgg gatcagatga taacctcaat cgtaccattc gtcgtactaa cagcaaacca 2040 cgccatttta cttacgatct aatgatgatt accttcactg gctcagttac gcaatacctc 2100 atacctgaat ggcttggtga aagtttgacg gtttacgaag aaaaacatga aggcgctcgt 2160 ctttttgaaa aatctagctt gttttcaact ttaagctgca ttccggcaac gtttttagca 2220 aatcacatac taatcgaatg tttagaaaaa agctcgaaca aactgatttc atttatggat 2280 ggtgtgatca gtgccatgtc cactagcatc gaattttcga ctttcaaaaa taccatgctc 2340 aacaacttga aaaggtgtac acaggcttct gagatgaacg ttgcgaaaca gtctccaata 2400 gcaggaacta gcagaaacaa gtcttttcgt tcctatttac gatcttctcg accaaaccat 2460 gtctatgacg cgttgtccta ttgtatctcc aagaaacaga acgggttgtt cacatcagaa 2520 gaaatgtgca tgtcttataa tctcagatca tttggaaaag tgggagttga ctatagcaac 2580 ggtgaattgt catatgatat ctcgtcaaga gaagagctgt acaacaatca tccctgtgcg 2640 cttcgactta gaaatctcgg acattttgtc tttggaaaac attttagatg caaagtatgt 2700 cgcaacaatt acggaactag ctttgaactt tccctgtgtc aattgggaca tcaagaaaca 2760 gcaattgaag cagttcgatc caacacaatc actagtcaaa ttagagcaaa acttcaacca 2820 actacagcgc gatgataagc ttcattttaa ttgttgttat aattatcctg ctttacacat 2880 attaaaccgt attttaaatg tttctaaaga cgtaattcca tttttatttg atcacaatca 2940 caacgctaac aataaaacga tgtctgactt atcttccacg cttaacaatt gtcgtgatat 3000 gaaagtttct gagagacatc actcacttag aactttactt ttcggaagca cgctaggagt 3060 tatacttcat gtttgagggt gtgttatccc tggctgcaag cgggaggcgc gtgaacaggt 3120 gttccacgtc ttcttagatg cgggggggag tgaatacagc tgatgtc 3167 //