ID HQ731495; SV 1; linear; genomic RNA; STD; VRL; 3565 BP. XX AC HQ731495; XX DT 03-APR-2013 (Rel. 116, Created) DT 04-JUN-2013 (Rel. 117, Last updated, Version 2) XX DE Rice black-streaked dwarf virus 2 isolate V segment S4, complete sequence. XX KW . XX OS Rice black-streaked dwarf virus 2 OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RC Publication Status: Online-Only RP 1-3565 RX PUBMED; 23704174. RA Xue J., Li J., Ta H.A., Zhang H.M., Yang J., Lv M.F., Meng Y., Li P.P., RA Chen J.P.; RT "Complete genomic sequence of southern rice blacked-dwarf virus, a novel RT fijivirus, from Vietnam"; RL Genome Announc 1(3):E00212-13(2013). XX RN [2] RP 1-3565 RA Zhang H.; RT ; RL Submitted (20-DEC-2010) to the INSDC. RL Institution of Virology and Biotechnology, Zhejiang Academy of Agricultural RL Sciences, 198 Shiqiao Road, Hangzhou, Zhejiang 310021, China XX DR MD5; d617f525266073aebe93b4ca494ebf93. XX CC GenBank Accession Numbers HQ731492-HQ731501 represent sequences CC from the 10 segments of Rice black-streaked dwarf virus 2. XX FH Key Location/Qualifiers FH FT source 1..3565 FT /organism="Rice black-streaked dwarf virus 2" FT /segment="S4" FT /isolate="V" FT /mol_type="genomic RNA" FT /country="Viet Nam" FT /isolation_source="rice" FT /db_xref="taxon:566568" FT CDS 15..3455 FT /codon_start=1 FT /product="structural protein P4" FT /db_xref="UniProtKB/TrEMBL:M4GP52" FT /protein_id="AEV91048.1" FT /translation="MLKVNVQALIYPFSGQITDIRRNQLIPTAKFKHTVLHQPIFITKL FT KNKFSSNDAPPTRDTLRVNPVWSNAFFDWNSALLNPWTVLPSSTGSGSMSIPSHKNVES FT GNAILKNAEFINERLPAFLKLLFDSLNLKENGYVNQFGFWALLYLDYSLHCLVPTEYYR FT QMLNLRTKDNIIFLDTYNEVEYAISYLSRFNKILYVNGHGRKFVKLPSFGKLGFTFDKD FT TILGGIGNDLQYWTLWPLHNDYTQADTNRPNHANILRNLGQFNNELVGIHYYPTFFYEH FT YLYFETIQELVKHQMYNVVRTYHAQLKLQDNLGTNRLERRGYYLTAYSPFYELFIDAIA FT QEFGELYLYIQLFGAIPFNSGSPSGIPMTYSDFDSYYHRRFGHLKEFGKLTFENLTEKY FT NRSKLKPFQLFFVYDQMYQLMQTISPSLNLKPNLELIEFEEYGDGANLEDFDINDVSAC FT RLIDYPLGDALPLNTLEVFPPNLFEVSEHIRMMFESRFLSPYAMYSLPLVPGGHDVLIQ FT TDESRLSDFRKNTAQRKVFKALQKQVLNSKNIFKKFVEPNLIKSSLSSADFLFWVAYSV FT ASSPKFTVNVKGELDVPPITADVDKLVYTSPNTSSFKLLSLFFQFLHEKTFVQLNQPMS FT IVFLGAKSEPVADMLYRLSHENWSIQRYGNDAEWPGKKANVLSINLKNVYDVAIPDMDQ FT SIGSSVANITANTLRQLRVCLESFSKRLIFKLQYCLFHTLSSVTAILREYGAEIAASGH FT FIKLRIIRHAWSKVGSLEIFLIIDKVKTAESIPDDKELRKVVNTLGLSEPNQLFFTYMG FT TPRKYTLNDLNCKIFSVDITSEEMTNICSVFLNLSQCVSYGSSIYDKEHLNLTFFGTTN FT IQRIGLFMRNKQIYRALSITGSEHKPEGIFTPSLDFVIPGVREVLVLGDAQRMVGWKML FT KALYFDKGVLDVSLTAYDIGCRDYECAYMTVIDDDTILNYVGYDRASVLDVKRGITVIK FT AEVNRDKLTELCGLGHVFAFNSYYMGFSTRDELEKELNYIADTLVIKGFFFISFYAMHD FT DLKPVLKHHGFIDITSADVAADKFTFGRYHAVATVSVDFVEEWKAKMMTKYDVYQIFLS FT ANDVSFSCIMHGYSVNLDSMYFAPVYNLVSPCFLIHPKK" XX SQ Sequence 3565 BP; 1110 A; 571 C; 643 G; 1241 T; 0 other; aagttttttt caggatgttg aaagtaaatg tgcaggccct catttatccc ttcagcggac 60 aaatcacaga cattagaaga aaccaactca ttccaactgc taaatttaaa cacactgtct 120 tacatcagcc tatttttatt acaaaactta aaaataaatt ctcatccaat gacgcccctc 180 caactcgaga tactctacga gttaatcctg tttggtcaaa tgcttttttt gattggaatt 240 cagctttatt aaatccttgg actgtccttc cctcctcgac tggctctggc tcaatgtcaa 300 ttccatcaca taaaaatgtt gaatcaggca acgcaatttt gaaaaatgct gaattcatta 360 acgaacgtct tccagctttc ttaaagctgt tgtttgatag tttgaatttg aaagaaaatg 420 gatatgttaa tcaatttgga ttttgggctt tattatacct agattacagt ttgcattgtc 480 tcgtaccaac tgaatattat cgccaaatgt taaatctacg aacaaaggat aacataatat 540 ttttagacac gtataatgaa gtagaatatg caatttcata tttatctcga ttcaacaaaa 600 ttttatatgt taatggtcat ggtcgaaaat tcgttaaatt gccaagcttt ggaaaactag 660 gatttacttt tgataaagac accattctag gaggaattgg aaacgatctt caatattgga 720 cattatggcc tttacacaac gactatactc aagctgatac caatagacca aatcatgcga 780 acattttacg aaatttagga caattcaata atgagttagt tggtattcat tattatccga 840 ccttctttta tgaacattat ctttattttg aaaccattca agagctagtt aaacatcaaa 900 tgtataacgt tgttcgtaca taccatgctc aattaaaatt acaagacaat ctcggtacta 960 atcgtttaga aagaagaggc tactatttga ctgcttacag tccattttat gaattattca 1020 ttgacgcgat agctcaagag ttcggtgaat tatatctcta tatacaactg tttggtgcta 1080 ttccttttaa cagtggaagt cctagtggta ttcctatgac ttactcagat tttgattcct 1140 attatcatcg tagatttgga catttgaaag aatttggaaa acttactttt gaaaatttaa 1200 ctgaaaaata caatagatct aaactcaaac ctttccaact gttttttgtt tatgatcaga 1260 tgtatcaact gatgcaaaca atatctccta gtttaaattt gaaacctaat cttgagctta 1320 ttgagtttga agagtatggt gacggtgcca atttagaaga tttcgatatt aatgatgtta 1380 gtgcatgccg gttgattgat tatcctttag gtgacgcatt acccttaaac actttagaag 1440 tattccctcc aaatttgttt gaagtttcag agcacattcg aatgatgttc gaaagccgtt 1500 ttctcagtcc ttatgcaatg tattctttgc ctttagttcc aggtggtcat gacgttttga 1560 ttcaaacaga tgagagtaga ttatccgatt ttcgtaaaaa cacagctcag aggaaagtat 1620 tcaaggcttt acaaaagcaa gttttaaatt ctaaaaacat ctttaagaaa tttgttgaac 1680 ctaatttaat aaaaagttcc ttgtcttcag ctgacttttt attttgggtt gcttatagtg 1740 tagcatcttc accgaaattt acggtgaatg tcaaaggtga attagacgta cctccaatca 1800 cagcagacgt tgataaatta gtatacacat ctcctaatac ttcttctttc aaattattaa 1860 gcttattctt tcagtttttg catgagaaaa cttttgttca gttaaatcaa cccatgagta 1920 tcgtctttct tggtgctaaa agtgaacccg ttgctgacat gttatatcgt ttatcgcatg 1980 agaattggag tattcaaagg tatggtaatg acgcggaatg gccaggtaaa aaagcaaatg 2040 ttctatctat taatttgaaa aatgtatatg acgtcgccat tcctgatatg gatcaaagca 2100 taggatctag cgttgcaaat attactgcga atactttaag acaattgaga gtttgtttag 2160 aatcatttag taaaagattg atttttaagt tgcaatactg tctatttcat actttgagtt 2220 cagtcactgc tattcttcgt gaatacggtg ctgagatagc tgcatcaggt cattttatca 2280 aattgcgaat tattcgtcat gcttggtcga aagtgggaag tctggaaata tttttgatta 2340 tagacaaggt aaaaacagct gagtcaattc cggatgataa ggagttaagg aaagttgtga 2400 atactttagg attgagcgaa cctaatcaat tgttctttac atacatgggt acccctcgaa 2460 aatacacctt gaacgacttg aattgtaaaa tattcagcgt tgacataacc tctgaagaaa 2520 tgacaaatat ttgttctgta tttttaaatt tatctcaatg tgtcagttat ggttcttcca 2580 tttatgataa ggaacattta aatttaactt ttttcgggac gacaaatatt caaagaatcg 2640 gattgttcat gcgcaataaa caaatttata gagctttgtc aattacaggt agcgaacaca 2700 agccagaagg aatttttaca ccctcattag attttgttat tcccggtgtt cgagaagttc 2760 tagtcttagg agatgctcag cgtatggttg gatggaaaat gctgaaggct ttgtattttg 2820 ataaaggtgt tcttgatgtt agtttaactg catatgatat tggttgtcgt gattatgagt 2880 gtgcttatat gactgttatc gatgatgata ctattcttaa ttatgtggga tacgatagag 2940 cttctgtgct ggatgttaaa cgtggaatta cagttattaa agctgaagtg aacagagaca 3000 agttaactga attgtgcggt ttaggacacg tcttcgcttt taattcttat tacatgggtt 3060 tttctactag agacgaattg gagaaagaat tgaattacat tgctgataca ttagtgataa 3120 aaggtttctt tttcataagt ttttacgcaa tgcatgacga tttaaaacct gtattgaaac 3180 atcatgggtt tatagatata actagtgcgg atgtggctgc agataaattc acttttggaa 3240 gatatcatgc cgtcgctact gtcagtgtgg attttgtaga agagtggaaa gcaaaaatga 3300 tgactaaata tgacgtttat caaatctttt tatcagctaa tgatgttagt ttcagttgta 3360 tcatgcatgg ttattctgtc aatttagata gtatgtattt cgcgccggtt tataacttag 3420 tttctccttg tttcttaatt catcccaaaa aatgaacttt taatgtttgt gcatgagtct 3480 tggaaggata tgagatactg tcacatgcgc tcttcccttt aacataccgt gttgtggcgg 3540 attaaacctg aaaacagcta acgtc 3565 //