ID HQ731493; SV 1; linear; genomic RNA; STD; VRL; 3815 BP. XX AC HQ731493; XX DT 03-APR-2013 (Rel. 116, Created) DT 04-JUN-2013 (Rel. 117, Last updated, Version 2) XX DE Rice black-streaked dwarf virus 2 isolate V segment S2, complete sequence. XX KW . XX OS Rice black-streaked dwarf virus 2 OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RC Publication Status: Online-Only RP 1-3815 RX PUBMED; 23704174. RA Xue J., Li J., Ta H.A., Zhang H.M., Yang J., Lv M.F., Meng Y., Li P.P., RA Chen J.P.; RT "Complete genomic sequence of southern rice blacked-dwarf virus, a novel RT fijivirus, from Vietnam"; RL Genome Announc 1(3):E00212-13(2013). XX RN [2] RP 1-3815 RA Zhang H.; RT ; RL Submitted (20-DEC-2010) to the INSDC. RL Institution of Virology and Biotechnology, Zhejiang Academy of Agricultural RL Sciences, 198 Shiqiao Road, Hangzhou, Zhejiang 310021, China XX DR MD5; 87f66fc4118abfe675d585aee4b40b52. XX CC GenBank Accession Numbers HQ731492-HQ731501 represent sequences CC from the 10 segments of Rice black-streaked dwarf virus 2. XX FH Key Location/Qualifiers FH FT source 1..3815 FT /organism="Rice black-streaked dwarf virus 2" FT /segment="S2" FT /isolate="V" FT /mol_type="genomic RNA" FT /country="Viet Nam" FT /isolation_source="rice" FT /db_xref="taxon:566568" FT CDS 46..3726 FT /codon_start=1 FT /product="structural protein P2" FT /db_xref="UniProtKB/TrEMBL:M4GP46" FT /protein_id="AEV91046.1" FT /translation="MNLEENRKKGAKQDEDEKKEPDKTQEAEEPAQEKQESQKSQEKTD FT SVDPDAVINQEGITNSSRPEEIKYKDGSTIQAKTALSVEAIMNIQGHLKQSDQKLVDEQ FT ANQYLTYLTSNVPAYTTTFGITDCADFQLIPFYRSIEFTDDNSQQFPSLFCFNTFVNQY FT YDTDMTTYESKRYFEIFKDHPALLRSSEAFPVNAYKVSVGWNGNSFAPEITDPTVIGDT FT SLIKNVSYVGVHSSDNYKDKKMFSRLKTFLEIAANCNLLLKGCRTKPLSIEYDNTLISK FT KLAGKKILYNDRAHIIFNGIYHSVTPFQKKINDMLMDGNTEIDFDKIYKFGRTIEQTIN FT TYDLICRGYGNTDQFAAYLINLATQRIRDHRMTANHYKTLMAANYPNRVSMHVFDTMID FT DLLFVYCPTEEDWKFSMFVIMIDKNIRSLLMNKSLSLMTSRNLFGQNDIGVKLTTLINN FT KNNSPTSREAVTYFMNVLAGGNIESFCQLLTAEMYAGFIDFKVENTYVETEYLDILVLL FT EVLFAFIITPRLAWWNSHRFGRTLFDLMYTFCNDEWNKWEGEFGVFVKLQRGTWNKVNI FT SIDRYDLNDLLDGVVFSFLVQRQYTQKQLSDYPFISSIYNLIAPLGDYVNLTRKINAKY FT PFFETVVRGYLPCSAEDYKEASMINAVNTRVNAIGAAVHLVTKNYFSHNTVKTSVKESY FT NTLLNTIRIASNNLGLLMHYTVAPMLKTMYDSFLFVCDGFDKNSPWKRPRMIAYSGYNV FT LADTGNQNDNLVNLLKGKGITVPLTPLHCFSKLYTYVAIGVHGVCRNDTVTTTGSFLSR FT NFYDPNTINILPFDGQSITELALKVVGHSKRINTVFTIFNYLHKESTSEILSTVRERLS FT AFWTTSNGRAVLHEITRTLNCPVERYFEHENAFYTMDSDPRVYLPTLYASDANGNIDQV FT QPATCAVHKKYQYGDTYLESMLKVISHVTFDDDLPLFRQVEGLAFGYYSTGTSSPADFF FT NVENDTEYFTINLDDHLEVFTTTGTDGFSVQLKFKKDNVDHEYINPLSNAIPKIKFILK FT RLGNMNEHFVIFMKRMIDTRRHMVVLTDVIVDYNIVTLANWKDFKISDENIFNQFVLNR FT DLNSIQLNFYDTRFIIQNRTDELLDRYISLSYRNIAALKDFVVMGGIFGNPNQAIDKLT FT EIDKDVYCFGERNGHTSKYFISKKDKIKGSTVNFNNHFTYLGPQSETRLPILDIRVPSQ FT I" XX SQ Sequence 3815 BP; 1255 A; 658 C; 652 G; 1250 T; 0 other; aagtttttta ccggaccctt ggattcaccc aaaattaagg acgaaatgaa tttggaggag 60 aaccgtaaaa aaggcgctaa acaagatgaa gatgaaaaga aagaaccaga taaaacgcaa 120 gaagcagaag aaccagctca agaaaaacaa gaatcacaga aaagtcaaga gaaaactgac 180 tcagtcgatc ctgacgctgt cattaatcaa gaaggaatta caaactcatc acgaccagaa 240 gaaattaaat ataaggatgg tagtacaatt caggctaaga ccgcactttc agttgaagcg 300 atcatgaaca tacaaggtca tttgaaacaa tcagatcaaa aacttgtcga cgaacaagca 360 aatcagtatc ttacatatct tacttcaaac gttccagcct ataccacaac atttggcatt 420 acagattgcg ctgacttcca actcatacct ttttatcgat ctattgaatt tacagatgat 480 aattctcaac aatttccttc attgttctgt tttaatactt tcgtaaatca atattatgat 540 actgatatga ctacttatga aagcaaaaga tattttgaaa tatttaaaga tcatcccgca 600 ttactacgtt caagtgaagc ttttcccgtt aatgcttata aagttagtgt tggatggaat 660 ggtaatagtt tcgcacctga aatcactgat cctactgtta ttggagatac atctttgata 720 aaaaacgttt cttatgtagg cgttcacagc tcagacaatt ataaagataa gaaaatgttt 780 tcgcgcttaa aaacattcct agaaattgct gctaattgta atttattatt aaaaggctgc 840 cgtactaaac ccttgtccat agaatatgat aacactttga tttctaaaaa gttagcagga 900 aaaaagattc tttacaatga cagagcgcac atcattttca atggtatcta tcactcagtt 960 actccattcc aaaagaaaat taatgacatg ttgatggatg gtaatactga aattgacttt 1020 gataaaattt ataaatttgg tcgtacaatt gaacaaacta ttaatactta tgatttaatt 1080 tgtcgtggat atggaaacac agaccaattt gctgcttatt tgatcaattt ggctacacaa 1140 agaattcgtg atcatagaat gaccgctaat cattataaga ctttgatggc tgctaattat 1200 cccaacagag ttagtatgca tgtttttgac accatgattg acgatttatt gtttgtttat 1260 tgtcctaccg aagaagattg gaaattcagt atgtttgtaa ttatgataga caagaacatc 1320 aggtctcttc ttatgaacaa atcgctatct ttgatgacct cgagaaattt atttggacaa 1380 aatgatattg gagttaagct tactacttta attaataaca aaaataatag tcctacttct 1440 agagaagctg taacttattt tatgaacgtg cttgcaggtg gaaacattga aagtttttgt 1500 caactcttaa ctgctgaaat gtatgctggg ttcattgatt ttaaagttga aaatacttac 1560 gtcgaaactg aatatttaga tattttggtg ttgcttgaag ttttatttgc tttcattatt 1620 acacctcgtt tagcttggtg gaacagtcac agatttggtc gtactctttt tgatttaatg 1680 tatacatttt gtaatgatga atggaataaa tgggaaggag aatttggcgt atttgttaaa 1740 cttcaaagag gaacttggaa taaagtaaat atttctatag atcgttacga tttaaatgat 1800 ttgctagatg gcgtagtgtt tagtttttta gttcaaagac agtacactca aaaacaactt 1860 tctgattatc cttttataag ttccatttac aatcttattg ctcctttggg agactatgta 1920 aatctaacgc gaaaaattaa tgctaaatat ccattttttg aaaccgttgt tcgaggttac 1980 cttccttgct ctgctgaaga ttacaaagaa gctagtatga tcaacgctgt caacactcgt 2040 gttaacgcta tcggagctgc tgttcatttg gttactaaga attactttag tcataatact 2100 gtaaaaacat cagtcaaaga atcttataat actttgctga acaccattcg tatcgcctct 2160 aataatttag gactactgat gcattatact gttgctccca tgctaaaaac gatgtatgat 2220 tcttttttgt tcgtatgtga tggttttgat aagaatagtc cttggaaaag acctagaatg 2280 attgcttaca gcggttacaa cgtattggca gatactggaa atcagaatga caacctcgta 2340 aatctactta aaggcaaagg aatcaccgta cccttgactc ctcttcattg tttcagtaaa 2400 ttgtacactt acgttgctat tggcgttcat ggtgtttgta gaaacgatac agtaacaaca 2460 actggcagtt ttttgtctcg taatttttat gatcccaata cgattaacat cttgccattt 2520 gatggtcaat cgattactga attagcatta aaagttgtag gacacagcaa acgtatcaat 2580 actgtcttta caatattcaa ttatttgcac aaagagagca ccagtgagat tttgtcaact 2640 gttcgcgaac ggctttctgc tttttggact actagcaatg gaagagcagt tcttcatgaa 2700 atcactcgca cactcaattg ccctgtcgaa cgttattttg agcacgagaa tgctttttac 2760 actatggact ctgatcctag agtgtatctt ccaactttat atgcttctga tgctaatgga 2820 aacatcgacc aagttcaacc cgctacttgt gctgttcaca aaaaatatca atacggcgac 2880 acttatctag aatccatgtt gaaagtgatt tctcatgtga cttttgatga tgacttacct 2940 ttatttcgtc aagttgaagg cttagctttt ggttattaca gtaccggcac atcttcaccc 3000 gcagacttct ttaacgtcga aaacgatact gaatatttca ctattaattt agacgatcat 3060 cttgaagtgt ttaccaccac tggtacagac ggtttcagtg ttcaattgaa attcaaaaaa 3120 gacaacgttg atcacgaata cattaatcca ctatctaacg ctattcctaa aataaaattt 3180 atcttgaaga gattaggtaa tatgaatgaa cattttgtaa ttttcatgaa aagaatgatt 3240 gatactagaa gacatatggt agttctaacc gatgtgattg ttgactataa cattgtcact 3300 ttagccaatt ggaaagactt taagataagt gacgagaaca tctttaacca atttgttttg 3360 aatcgtgatc tgaatagcat tcaactaaac ttttacgata ctagattcat tattcaaaat 3420 cgtactgatg aattgctcga ccgttacatt agcttaagtt atcgtaacat tgccgcttta 3480 aaagacttcg tagtaatggg aggcattttt ggtaatccta accaggccat tgacaaattg 3540 actgagatag ataaagacgt atactgtttt ggagaacgta atggtcacac ttcaaagtat 3600 tttatcagta aaaaagacaa gattaaagga agtaccgtta actttaacaa tcatttcact 3660 tatcttggac cacaatctga gactagactg cccattttgg atatcagagt tccatctcaa 3720 atttaattaa catctttctc cttctttttc gatgtgtcta gctttttgcg gtgtattcta 3780 atggtcatcc acaaccggta aaaccagctg atgtc 3815 //