ID HQ728386; SV 1; linear; genomic RNA; STD; VRL; 4955 BP. XX AC HQ728386; XX DT 01-APR-2011 (Rel. 108, Created) DT 10-APR-2013 (Rel. 116, Last updated, Version 5) XX DE Soybean vein necrosis virus isolate TN segment M, complete sequence. XX KW . XX OS Soybean vein necrosis virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; Orthotospovirus; OC Soybean vein necrosis orthotospovirus. XX RN [1] RP 1-4955 RX DOI; 10.1007/s11262-011-0621-9. RX PUBMED; 21604150. RA Zhou J., Kantartzi S.K., Wen R.H., Newman M., Hajimorad M.R., Rupe J.C., RA Tzanetakis I.E.; RT "Molecular characterization of a new tospovirus infecting soybean"; RL Virus Genes 43(2):289-295(2011). XX RN [2] RC Publication Status: Available-Online prior to print RP 1-4955 RX DOI; 10.1094/PHYTO-12-12-0322-R. RX PUBMED; 23550970. RA Zhou J., Tzanetakis I.; RT "Epidemiology of Soybean vein necrosis-associated virus"; RL Phytopathology 103(9):966-971(2013). XX RN [3] RP 1-4955 RA Tzanetakis I.E.; RT ; RL Submitted (18-DEC-2010) to the INSDC. RL Department of Plant Pathology, Cell and Molecular Biology Program, RL University of Arkansas, Plant Pathology-Plant Sciences Building, 495 N. RL Campus Drive, Room 217, Fayetteville, AR 72701, USA XX DR MD5; aea22ba2353d4197c81e238c08340b93. DR EuropePMC; PMC3371012; 22715400. DR EuropePMC; PMC4718560; 26784931. XX FH Key Location/Qualifiers FH FT source 1..4955 FT /organism="Soybean vein necrosis virus" FT /segment="M" FT /host="soybean" FT /isolate="TN" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Sep-2008" FT /db_xref="taxon:980895" FT CDS 58..1008 FT /codon_start=1 FT /product="nonstructural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:F2Y3N4" FT /protein_id="ADX96064.1" FT /translation="MSNFVAKAIEMGQGMIPKSNGEIKEYQNPITESQGRHKLDLGNYK FT GKEVDKIVKKNMELSKGSFVRDTTGSSELGVYESGTTLSSDSNLDLAAKMIVDKSNHIS FT KWKNDVLVGNGKELIKKKLHLKPNWDSMKQFMMLSRVIVWICPVSPDTSGYLKIGIKDQ FT CSEDKNAFVARGEGKINTPICFYFNLNWSYPKEKNTLEFCPIAIMETDQQYKKGAPLAS FT VMYSWCKEFCGSPRYYEKSDCYVIPISPAVRFQSAAMIEACKYMIPKGSSGKAIKKQIE FT ELGKYLEQAALDEENEEGGMESGSSFPSLVEMKPI" FT CDS complement(1276..4863) FT /codon_start=1 FT /product="glycoprotein precursor" FT /db_xref="GOA:F2Y3N5" FT /db_xref="InterPro:IPR005167" FT /db_xref="UniProtKB/TrEMBL:F2Y3N5" FT /protein_id="ADX96063.1" FT /translation="MRIKDFFVIMLLFGLNLVFLSIFINASIRGDHEVSQETSFEELSK FT EVMEAHEQGKIGKSLVSSRVEAFESFNKEPIETSRRPEMNDRITQTKPGIDDQMIPKHG FT EGKREAPPPSKVDLSCANINPENCKVVGKTPFNFYYQISDSEETISCLSSKVEDLKACN FT PQSMHVFTSAPVLPITTILNKRVLSVGSKYYIQNSIDSSSFPVQDSGNVQLGLVNIYSV FT RLTGECNITKVSLTNPFFVTLTSSNKETFYSIKKIGADDVNLIKFSGEKTVELPSDSVD FT GNHVLLCGDKVSEIPKIDVNKRNCLVKYKGKRYQQSACVHFNILRYLLVSIILFVPVSW FT FLNKTKDSMFLWYDFLGIIFYPILYILNWLWRYFPMKCSNCGNFSLITHSCYDTCVCNK FT SKAKSEHAENCPIITGKAFSKSEDQDVDDLSVEETESLTGSKKPKKASSKFRTFQLVVN FT TKISTGFLMFVTKVLLGFLIFSQMPKTMASKTATQTISQTETQVLCVSYCSAKPGCNKF FT LFKNEEVCIDNPKLKCNCLIRDGMINEEAYINGTRYSVSMVDNCLDRRCEFSSNKVEDL FT LACRLGCGQLKKLKSSKLQSKALKQGIVPRGASISQIYSSLRLQDGYIDSEESLHSLGD FT LPENKVKIEDEDIPEGVLPRQSFVYNSIVDGKYRYLISMDAIQSTGYVYSMNDAKMAPP FT QELVVFVKEAGVTYTMKTLYYTAPISATHTHVYSTCTGNCETCRKEHPISGYQDYCIAP FT TSNWGCEELGCLAIGEGATCGYCRNVYDLSKKYSVRQILTSHVTVKVCFKGFAGTGCQT FT ITDSVPFQNSYYQLSIDADLHNDDLTAGSRVAVDPNGMLFKGNIANLKDSSLAFGHPQL FT NELGVLMFAKANLELSDFTWSCAVIGNKKVDVKKCGYDTFHQYIGLEPISDYFADEIDD FT GTMFVKKDFKIGKINLIVDLPSELFQTIAKKPKVAMVASACKGCLSCSSGINCDLEFTS FT DSIFSCRISWEHCTSEPEQIAMKKGTNVFKLKPCFALKIQLLQKIILVPSDDESMALEF FT ETKNVEISDPETIIDHNDDAFNEEVEYDSDTSFKSVWDYIKSPFNWVASFFGDFFEIVR FT VLLVLTCCAVLFISISKLYEICHEYYSQEQYKKSSRKKEGDLEDDDEKKAQDDIIKSLR FT NQVTEDTTYKRNSNKSTRKAPFDDLIIRV" XX SQ Sequence 4955 BP; 1572 A; 901 C; 855 G; 1627 T; 0 other; agagcaatcg gcgcaataag aaaaataagt tggaaaggat aaactacaaa tagcaaaatg 60 tcaaactttg tagcaaaggc tattgaaatg ggacagggaa tgataccgaa aagcaatgga 120 gagataaaag aataccagaa tcctatcact gagtctcaag gtagacataa attggattta 180 ggtaactaca aagggaaaga agttgacaag attgttaaga aaaacatgga attgtcaaaa 240 ggaagtttcg tgagagacac tacaggatca tctgaattag gtgtatatga gtctggtaca 300 actctgtcat cagattcaaa cctagactta gctgccaaga tgattgttga caaaagcaat 360 catataagca aatggaagaa cgatgttttg gttggcaatg ggaaagaact aatcaagaaa 420 aagctccatc tgaaacccaa ttgggacagc atgaagcaat tcatgatgct ttctagagtt 480 attgtttgga tttgccctgt ttcaccagac acttcaggat atctcaaaat aggtattaaa 540 gatcaatgtt cagaagataa aaatgctttt gttgctagag gtgaaggcaa gataaataca 600 cctatatgct tttacttcaa cttgaattgg tcttacccaa aggaaaagaa tacattggag 660 ttctgcccta tagccatcat ggagacagat caacaataca aaaagggtgc tcctttagca 720 tcagtcatgt attcttggtg caaagagttt tgtggatcac caaggtatta tgaaaaaagt 780 gactgctatg tcatacctat atctccagct gttagattcc aatctgcagc aatgatagaa 840 gcatgcaaat atatgatccc gaaaggttct tctggaaaag caataaaaaa gcagatagag 900 gaactaggga agtatcttga acaagctgcc ttagatgaag agaatgaaga aggtgggatg 960 gaatctggtt ctagcttccc ttctttggtg gaaatgaaac cgatttaatt taaattaaat 1020 gtttatttca ataagactta tgtttaattt taatttctat gtgtgcatgt ttgaacctaa 1080 atgaataaat gaaaacaaat aaaaattgaa aatcaaaaaa ccaaaaatag aataaggtct 1140 tcggaccaaa ttggttaaac cattttgggt ctttcgacct ctctcttttt ttgatttttg 1200 attttggatt ttaatttaaa taagattaac attctctagt ttagcctata aataactaac 1260 aaatctaact gctgatcaaa ccctaattat taaatcatca aaaggtgctt tccttgtgct 1320 tttgttggaa tttcttttgt atgttgtgtc ttcagttact tgatttctta agctttttat 1380 tatgtcgtct tgagctttct tttcatcatc atcttctaaa tctccctctt tctttctact 1440 tgatttcttg tactgctcct ggctgtagta ctcatggcag atctcataaa gtttagaaat 1500 actaatgaac agaacagcac aacatgttag gacaagtagt actctaacaa tttcaaagaa 1560 atctccaaag aatgacgcaa cccagttaaa gggacttttt atgtaatccc aaacagattt 1620 aaatgaagtg tcactatcat attcaacttc ttcattgaag gcatcatcgt tgtgatctat 1680 gatggtttct gggtcagaga tttccacatt ttttgtttca aactctaaag ccatggactc 1740 atcatctgaa ggtacaagga taatcttttg taagagttgg atctttagag caaaacatgg 1800 ttttaacttg aaaacattag tccctttttt catagctatc tgttctggtt cagatgtgca 1860 atgctcccag cttattctac aagaaaagat gctgtcagat gtgaactcta aatcacagtt 1920 tattcctgaa ctacagctta aacaaccttt gcaagctgag gcaaccattg ccacttttgg 1980 tttttttgct atagtttgaa agagttctga tggtaaatcg acaatgagat ttattttacc 2040 gattttgaag tcttttttta caaacatagt tccatcatca atttcatctg caaagtaatc 2100 tgaaataggc tctaatccta tatactgatg gaaagtatca taaccgcatt ttttaacatc 2160 tactttttta ttaccaataa cagcacaaga ccaagtgaaa tctgaaagtt ccaagtttgc 2220 tttggcaaac atcagcacac ctaattcatt cagctgggga tgtccaaaag ctaacgaaga 2280 gtcttttaaa ttagctatgt tccctttaaa aagcattcca tttggatcta cagccactct 2340 agacccagct gtaagatcat cattgtgcaa atcagcatca atacttagct gataataaga 2400 gttttggaaa ggtacactat ctgttattgt ctgacagcct gttcctgcaa atcctttaaa 2460 gcaaacttta actgtaacat gtgaggtaag tatctgtctg acagaatatt ttttagacaa 2520 gtcataaaca ttcctgcaat agccacatgt tgctccttct cctatagcca aacaacctag 2580 ctcttcgcaa ccccaattgg atgtcggtgc aatgcaataa tcttgataac cgctaatagg 2640 atgttctttc ctgcaagtct cacaattgcc tgtgcatgtt gaataaacat gggtatgtgt 2700 tgctgaaatc ggtgctgtgt aatatagggt tttcatggtg taagttactc ctgcttcttt 2760 tacgaaaact accagctctt gaggtggtgc catttttgcg tcattcatag agtacacata 2820 ccctgtagac tggatagcat ccatagaaat caaataccta tatttcccat caactattga 2880 attgtagaca aaagattgtc taggtagcac accctcaggt atatcttcat cttctatctt 2940 aactttattt tctggaagat caccaagaga atgcaagctc tcttctgaat ctatataccc 3000 atcttgaagc cttaatgagg aataaatttg actgatagat gcacctcttg gaactatccc 3060 ttgcttcaat gctttactct gaagtttgga gcttttgagt ttttttagtt gaccacaccc 3120 taatctgcat gctaaaaggt cttcaacttt attagaagaa aattcgcacc ttctatctaa 3180 gcaattgtca accatagaaa cagagtatct tgtcccattt atataagctt cttcatttat 3240 cattccatca cgaatcaaac agttgcactt cagctttgga ttgtcgatac agacttcttc 3300 atttttaaac aagaatttgt tacaaccagg ttttgctgaa caataactta cacaaaggac 3360 ttgagtttct gtttgagaaa tagtttgggt tgcagtctta ctagccattg tctttggcat 3420 ttgagaaaat atcaagaagc ccaataagac ttttgtaaca aacatcaaaa accctgtgct 3480 tattttggta ttcacaacca gttgaaatgt tctgaactta gaacttgctt tctttggctt 3540 tttgcttcct gtgagggatt cagtctcttc aactgacaga tcatcaacat cctgatcctc 3600 agacttggaa aaagctttcc ctgttatgat tggacaattt tctgcatgct cagactttgc 3660 ttttgatttg ttgcaaacac aagtatcata gcagctatgt gttattaatg aaaagttacc 3720 acagtttgaa catttcatgg ggaaatatct ccataaccag tttaatatat atagtattgg 3780 atagaagatt atcccaagga aatcatacca taaaaacatt gagtcttttg ttttgtttaa 3840 gaaccaagat actggaacaa acagaatgat tgagactaaa agatacctga gtatattgaa 3900 gtgcacacaa gcagattgct gatatctttt gcccttgtat tttaccaaac aatttctttt 3960 gttaacatct attttgggta tttctgaaac tttgtctcca cataaaagga catggtttcc 4020 atctacacta tctgatggta attccacagt tttctctcca ctgaatttta tcaagttgac 4080 atcatctgct ccaatcttct ttattgaata aaatgtttct ttgttggaac ttgtcaatgt 4140 tacgaagaaa ggattggtca agctgacttt tgttatgttg cattctccgg tcaatctaac 4200 agaataaatg ttgaccaaac ctagctgaac attaccagaa tcttgaacag gaaaggagct 4260 tgaatctatc gaattctgaa tatagtattt tgatccaact gaaagaactc tcttattcag 4320 aattgtggtg atgggtaaaa caggagcaga agtgaaaaca tgcatagatt gaggattgca 4380 agctttcaga tcttcaactt tacttgacag gcaagaaatt gtctcttctg aatcagaaat 4440 ctgataatag aaattaaagg gtgttttgcc gacaactttg caattctctg ggtttatgtt 4500 tgcacaactt aaatcaacct tggatggagg aggtgcttct cttttccctt caccatgttt 4560 aggtatcatc tgatcatcta tacctggctt ggtttgtgtt attcgatcat tcatttcagg 4620 tctccttgat gtttctatcg gttccttatt gaaagattca aaagcttcca ctctgctaga 4680 gaccaagctt ttgccaattt tcccttgttc atgagcttcc ataacttctt ttgaaagttc 4740 ttcaaaagaa gtttcttgag acacctcatg atctcctcta atagaggcat tgataaatat 4800 actcagaaaa actaggttta gaccaaataa tagcattata acaaagaaat ccttaatcct 4860 cattgattaa tgcaattata aaatcactta acctaattct gttgtggaat tgatgaataa 4920 cccttatgta tctttcttgt tgcgccgaat gctct 4955 //