ID HQ703343; SV 1; linear; genomic RNA; STD; VRL; 6932 BP. XX AC HQ703343; XX DT 03-JUL-2011 (Rel. 109, Created) DT 03-JUL-2011 (Rel. 109, Last updated, Version 1) XX DE Fig mosaic virus isolate CAN01 segment RNA1 RNA-dependent RNA polymerase DE gene, partial cds. XX KW . XX OS Fig mosaic emaravirus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Fimoviridae; Emaravirus. XX RN [1] RP 1-6932 RA Rott M.E., Schmidt A.-M.; RT "First Report: Identification of Fig Mosaic Virus in Ficus in Canada by RT Next Generation Sequencing"; RL Unpublished. XX RN [2] RP 1-6932 RA Rott M.E., Schmidt A.-M.; RT ; RL Submitted (13-DEC-2010) to the INSDC. RL Centre for Plant Health, Canadian Food Inspection Agency, 8801 East Saanich RL Rd, Sidney, British Columbia V8L 1H3, Canada XX DR MD5; ed5e2d68e7e089380c66cbfdb551ab1c. DR EuropePMC; PMC4178757; 25100845. XX CC GenBank Accession Numbers HQ703343-HQ703346 represent sequences CC from the 4 segments of Fig mosaic virus isolate CAN01. XX FH Key Location/Qualifiers FH FT source 1..6932 FT /organism="Fig mosaic emaravirus" FT /segment="RNA1" FT /host="Ficus carica" FT /isolate="CAN01" FT /mol_type="genomic RNA" FT /country="Canada" FT /collection_date="Jun-2009" FT /identified_by="Rott M" FT /db_xref="taxon:1980427" FT 5'UTR 1..39 FT CDS 40..>6932 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:F8T051" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="UniProtKB/TrEMBL:F8T051" FT /protein_id="AEI98676.1" FT /translation="MEAKKGEIFESAISKIRSGDALPPDLMSKFLHIAGKTLKGYTITS FT KKRNIEKIYKQCTSDVHFHKDLVSLSEGILHTPPNQSQIDIVATLIGLLELSRHDLLIL FT CINELLQNQGYTIMGYDVPIKDVFPEIDSILTPDIFFTDGYDYYILEVKVRGKKTDLSI FT YYNRYKSVVDGSQKHIKVSVFNVSRSGYIEMGDYKISNLINIDPSTIEDITYCIDLCQN FT LREKYGRYPEFGFYMQDGMLADSSEPFIESGFKQMVFEHDNYEEISSLFGSKWNEIIND FT TDNISLISNPEDTIEKLLDAQKVLYQDCSDRYIEFQSHLEKNYMSTNSYNKTYLNDCNL FT SKILDKKNESLYNIVDTYKPSIYIPIAKTVFLDKFGFSRLDFYKSAFIDIQERGDSYTK FT SVINLVNTIFNSVSIDLLVKKNDEIDLETYKDVLTPDFCKYINDTSNKFKKIATVSNIT FT SDTSILNNNAFSINHHVDKYMKENICGFQNKHYDVDVQKKSCLSIKNSEDDALELLKLM FT GEIFNSKHYEGVYANDLVDIEVDNMNSHVCNLPKNCKTKYLDHLYSQHNIFKALISLNT FT VNSHKFRLIQTADPCTILIMLPNADTLKSAPLRYFTLTIIDKKDNTSYHANKLLGIAHE FT LLVGRNYNIILSKVVSLDVTRLKLLNHSFGKYCLIMSYYSTIKKDLRHQIHFMVWILCQ FT FITISSLSITDTYKNFVMAIYSDYSNIDNLIDDKLESRPTTLGHIVILQRCFHGLLQAS FT TQLKVINKNKNSEEIDERGDLIETGFNSNLSLKLPISGISVNNPREIIHEAFMLFYLGN FT KGLHGSPQELLNLYYTPYKFEQEYTDVIQRYKTILQEDGNISNMSISYDVMKKTSLAAY FT SNIYNKKENIRQSICSELSINKPLLALKQFSSTKSMVSNTKQVEIELPKKLPDNLDLYG FT LENIISNCKIDEDMEFMRFINSEIYRINSKRLKNEMSSSTREEKKEVTLLPEIYIETKK FT GVKFLRIKRHEYTRLINGDYIRQNNAKVFDEFYKLSEEYELVSLKDAYSKLIHDDELLI FT RIFYKDQRTADDREIYTGNAQTRLCLYPIEKTYKAICKHIPGEAITISGDQKQKKLLEQ FT RLQLIKEKKQKIKDKKWAEIYSVSSDASKWSARDVFLKFIITISVNPYLHPDEKWFLLY FT LCMTYYTKKIVFTDTIFNKMVDLADKDKHGKYEFMTEDFTQNYFTVRSNWLQGNLNMIS FT SFVHHCSTLYTETMLKILSDKNSLECSMTSMVHSDDSTYDFLICRDKKSKNRYVKEENI FT GKLIISLITYSNRFHCITLNEKKTYISTFYKEFLSTIIVGNELFFFYLADLLPLTSDTS FT YASPLQDLASYSGYINNSFSHACPREMIQTAIILINHLTLSTYNMQYTSDKNPRLNIQS FT TDLPIQIYPRYKVPIEMAGMIPYYSADAFNILNDIVLKLGYNDKLQSELVEDILTEELI FT SDYLNIIKKHTPMIVKYIKSCILCMDYSQYERDDADPYNIIDYDLSQKSIINVISLNKG FT QRLKKTYTYKKYLESETNVRLISAIHPEWCVIKPTDPELIKSNILQNYTNPNFRDGLIF FT STPAIDYGRRVISSNKNMYTISSHIMEKDKAKNIKTVYNDLNEKIDGVEITAKDLQRYL FT SLYLLSDKKISMAIQVFFSKIETVTMARPSYNKVVQPRSIYSEDFGRYSNNSLIESLLT FT SRYCKIATVDPKVEKFVDVSDYVLERIGDIKLYESPEDIDDDYINYYQFKYPHSDEVML FT DVEPVSDLGDLELKVYKNKLKFMSLLVKYYNDIKKTIENPNYNIPNYPSPSSIIMTIDS FT LLKKDEISTKVYLSNVKSIKYDDYLLTRYGMYAHNDFHIKYKLGYKVKIASSTKISHTL FT QTYKDTYEPVAFVTKLISRNLELFTSLKDNEDFVTGHYKFNDMINTLQNSRDINSSALL FT LMLDKIPNSRFMITLLNDNRVYNHWLIPTNSLQEDPGASLAYYMCQGNIMKVRTFTRGG FT SIVFTMTYYKYVNRDLGALVNIKKKISMDYVELLRKSLVTNRVEPTSSYDTYNINEYGR FT YTEYKGPRVFNVAQINYAKILDIKPAYTEIDDQVKLVLNIGTNEDHFTFDIRLRTYIDD FT EYYLNCLLDNLHIERENILGYLCEGTFFHRYPDYLKRILATLGPNQLVSLMSNYTDSDC FT ITDNIDVNRYGFLMEISNYFRDKNNIYMAELCETLEIVAMSTNVNILNVRNPEKFINNC FT NKIKLHPLCHEYVIHKYRADEEAPYYRLFRLVMKYRYNKSPVEKIILFIILIFRFYIHE FT YIDVEAEFEY" XX SQ Sequence 6932 BP; 2667 A; 998 C; 1091 G; 2176 T; 0 other; tgaactccct ttaattaaac aaaaaatcaa aaatatccaa tggaagctaa aaaaggtgaa 60 atattcgaga gtgcgatcag caaaataaga tctggagatg cattaccacc tgatctcatg 120 agtaagttct tgcacatagc tggtaagaca ctgaagggtt acacaatcac atctaaaaaa 180 aggaacattg aaaagatcta taagcagtgt actagtgatg ttcacttcca taaagatctt 240 gtatcacttt cagaaggaat attacacaca ccacctaatc aaagccaaat tgatatagtt 300 gccactttaa ttggtttact tgagttatct aggcatgatc tgctgatctt atgcatcaat 360 gaattgttgc agaatcaagg ttataccatc atgggctatg atgtaccaat caaagatgtg 420 ttccctgaaa ttgatagcat cttaacacct gatatattct ttacagatgg ttacgattat 480 tatatattag aagttaaagt cagaggaaag aagactgact tgtctattta ttataataga 540 tataaatcag ttgttgatgg ttcacaaaag cacattaaag ttagtgtttt caatgtttca 600 aggtctggtt acattgagat gggtgattac aagatctcaa atcttattaa tattgatcca 660 tctaccattg aagatattac atattgtata gacttgtgcc agaacctaag agaaaagtat 720 ggtaggtatc ctgaatttgg attttatatg caagatggta tgcttgctga tagcagtgaa 780 ccatttattg aatctggttt taaacagatg gtttttgaac atgacaatta tgaagagatc 840 tcaagcctat ttggtagcaa atggaatgaa attataaatg acactgataa tataagcttg 900 atatccaacc ctgaagatac tattgagaag ttattagatg ctcaaaaggt gttatatcaa 960 gattgttcag atagatatat tgaattccag tctcatttag aaaaaaatta tatgagtact 1020 aattcttaca ataagacata tctaaatgat tgcaatttat caaaaatatt agataaaaag 1080 aatgaatctt tatataacat tgtcgacaca tataaaccat ctatttacat accaattgca 1140 aaaacagtat tccttgataa atttgggttt tcaagattag atttttataa atcagcattt 1200 atagatattc aagagagagg agactcttac accaaatctg tcatcaatct ggttaatacg 1260 atatttaata gcgtctcaat tgatttactt gttaaaaaaa atgatgagat tgatctagaa 1320 acctacaaag atgttctaac gcctgatttc tgtaaataca taaatgatac aagcaataag 1380 ttcaagaaaa ttgcaacagt atctaacata acaagtgata caagcatttt gaataataat 1440 gcattttcaa ttaaccatca tgtggataaa tatatgaaag aaaatatttg tggatttcag 1500 aataaacatt atgatgtaga tgtccaaaaa aagagctgcc tatcaataaa aaatagtgaa 1560 gatgatgcat tagaactatt aaagttaatg ggggagatat ttaatagtaa gcattatgaa 1620 ggggtatatg caaatgatct agtagatatt gaggttgata atatgaatag tcatgtatgc 1680 aatcttccaa aaaattgcaa aactaaatat ttagatcatc tttacagcca gcataatata 1740 ttcaaagctt taatatcatt gaacacagtt aattctcata aatttagatt gattcaaaca 1800 gcagatccat gtacaatatt aatcatgctt ccaaacgcag acaccctgaa atctgcacca 1860 cttaggtatt tcacacttac aataattgat aaaaaggata atacaagtta ccatgcaaac 1920 aagctattgg gaatagcaca tgagttatta gtcggtcgga attataatat aatattatct 1980 aaagttgtaa gtttagatgt tacaagactt aagctattaa atcattcatt tggcaaatat 2040 tgtttaatta tgtcttatta ttcaaccata aagaaagatt taagacatca aatccatttt 2100 atggtgtgga tattatgtca atttattact atatcatcac taagcataac tgacacctat 2160 aagaattttg tcatggctat atattctgat tattcaaata ttgacaatct gattgatgac 2220 aagttagagt ctaggcctac aacattaggg catatagtaa tcttacaaag gtgtttccat 2280 ggtctactcc aggcttctac acaactcaag gtaattaaca aaaacaaaaa cagcgaagag 2340 attgatgaga ggggtgattt aatcgaaact ggatttaata gcaacttatc attaaagctg 2400 ccaatatcag gtattagtgt caataatcct agggagatta tacatgaagc atttatgtta 2460 ttttatctag gtaataaagg ccttcatggt tctccacagg agttgttaaa cttgtattac 2520 acaccataca aatttgaaca agaatatact gatgtaatac agagatataa aactatttta 2580 caagaggatg gaaatatttc taatatgtca atctcatatg atgttatgaa aaaaacatca 2640 ttagcagctt attcaaatat ttataataaa aaagaaaaca taaggcaatc tatatgcagt 2700 gaattaagta ttaataagcc attactagca ttgaaacaat tctctagtac aaaatctatg 2760 gtgtctaaca caaagcaggt cgaaatagaa ttaccaaaaa aattacctga taatctagat 2820 ctatatgggt tagagaatat catatcgaat tgcaagattg atgaagatat ggagttcatg 2880 agatttataa attcagaaat ttacagaatt aattcaaaga gattaaaaaa tgaaatgagt 2940 agttccacaa gagaagaaaa aaaggaagtt actttattac ctgagatata tatagaaaca 3000 aagaaaggtg tgaaattttt aaggataaaa aggcatgaat acactagatt gatcaatggt 3060 gactatatta gacagaacaa tgcaaaggtt tttgatgaat tttacaaatt atctgaagag 3120 tatgagctcg tctcactcaa ggacgcatac tctaagttaa tacatgatga tgaattactg 3180 attcgaatat tttataaaga tcagagaact gctgatgaca gagaaatata tacaggtaat 3240 gctcaaacta gactctgttt gtatccaata gaaaaaacat ataaggcaat ttgtaaacat 3300 atcccaggtg aagcaataac aatcagcggt gatcaaaagc aaaaaaaact actggagcaa 3360 agactacagc tgatcaaaga aaagaaacaa aaaattaaag ataaaaaatg ggctgaaatc 3420 tattctgtat cctcagatgc atcaaaatgg tctgctagag atgtgttctt aaaattcata 3480 atcacaatat ctgtaaatcc atatctccac cctgatgaaa aatggttttt attatatctg 3540 tgtatgacct attacaccaa aaaaattgtg tttacagata ccatattcaa taaaatggtt 3600 gatctagcag ataaagataa acatggaaag tatgagttta tgactgaaga ctttacacaa 3660 aactacttta cagtaaggag caattggtta caaggcaatc ttaatatgat atcatcattt 3720 gtccaccatt gctccacatt gtacactgag accatgttaa agattttatc tgataaaaat 3780 tctttggaat gctctatgac atctatggtt cactctgatg attcaacata tgattttcta 3840 atctgtagag ataaaaaatc aaagaataga tatgtgaaag aagaaaacat tggcaaactc 3900 attatatcct tgattacata ctcaaataga tttcattgta taacactaaa tgaaaaaaag 3960 acatatatta gtacattcta taaagagttt ctctctacaa ttatagttgg caatgaacta 4020 ttcttttttt atttagctga tttattacca ttgacatcag atacaagtta tgcctcacca 4080 ttgcaggatt tagcatcata ttctggttat ataaataatt ccttttcaca tgcttgccca 4140 agagagatga tccaaacagc tatcatactg atcaatcact tgacattatc cacttataac 4200 atgcaatata catctgataa aaatccaagg ttgaatatac aatctactga tttaccaatc 4260 cagatatacc ctcgttataa agttccaatt gaaatggctg gtatgatacc ctattactca 4320 gcagatgcat tcaatatcct gaatgatata gtattgaaat taggttacaa tgacaaattg 4380 cagtcagagc tcgtggagga tattttgact gaagaactca ttagtgatta tcttaacata 4440 ataaaaaaac atacaccaat gattgttaaa tatatcaaat catgtatctt gtgtatggat 4500 tactcacagt atgaaagaga tgatgcagat ccatataata taatagatta tgatttaagt 4560 caaaaatcta ttattaatgt catcagtctt aataaaggcc agcgattaaa gaaaacttac 4620 acatacaaga agtatttaga atcagaaact aatgtacgat taatatctgc tatacatcct 4680 gaatggtgtg tgataaaacc aactgaccca gagttaatta aatcaaatat attacaaaat 4740 tatacaaatc ccaattttag agatggatta atattttcca ctcctgcaat tgattatggt 4800 cgtagagtta ttagttcaaa caagaatatg tataccataa gttcacatat tatggaaaaa 4860 gataaagcaa aaaatataaa aacagtatac aatgatctaa atgagaaaat agatggagtt 4920 gaaataacag ctaaggatct acaaagatat ctaagccttt atctgttaag tgataaaaaa 4980 atctctatgg ctatacaagt atttttctct aaaatagaaa cagtgacaat ggccaggcca 5040 tcatataata aggttgtaca accaagaagc atatattctg aagattttgg taggtactct 5100 aataactcat tgatagaatc tcttttaact tcaagatatt gtaaaatagc tacagttgat 5160 ccaaaagttg aaaagtttgt tgatgttagt gattatgttt tagaaagaat tggtgatatc 5220 aaactatatg aatcaccaga agacattgat gatgactaca tcaattatta ccaatttaaa 5280 tatcctcatt ctgatgaggt tatgttagat gttgagcctg tttctgatct aggtgatctt 5340 gaactcaaag tttacaaaaa caagttgaag ttcatgtcat tgcttgtaaa gtactataat 5400 gatattaaaa aaactattga aaatcccaat tacaatattc ccaattaccc atctccatct 5460 tctataataa tgacaataga ttcattgcta aaaaaagatg agatcagtac taaagtatac 5520 ttatcaaatg taaaatctat taagtatgat gattatttgt tgactagata tggtatgtat 5580 gcccataatg attttcacat taagtacaag ttaggctaca aagttaaaat tgcatctagt 5640 acaaagatat cacacacatt acaaacatat aaagatacat atgaaccagt agcatttgtc 5700 accaaactaa tatctagaaa tctggaatta tttacttcac ttaaagacaa tgaagatttt 5760 gtcacaggac attataaatt taatgatatg ataaacacac ttcagaatag tcgagatatc 5820 aatagcagtg cattattatt aatgttggat aaaataccaa attcgagatt catgattaca 5880 ctacttaacg ataatagggt ttataatcac tggctgatac caacaaatag tttacaagaa 5940 gaccctggcg cctctttagc ttattacatg tgtcagggta atataatgaa agttagaacc 6000 tttaccagag gtggttccat agtattcaca atgacttact acaagtatgt aaaccgagac 6060 cttggtgcac ttgtcaatat taaaaagaag atatcaatgg attatgttga attattgagg 6120 aaatctttag tcacaaatag agttgaacca acatcttcgt atgacactta taatataaat 6180 gaatatggta ggtacactga atacaaaggt ccaagggtat ttaatgttgc acagatcaat 6240 tatgccaaaa tattagacat taaaccagcc tatactgaaa ttgatgatca agtgaagctt 6300 gttttgaata ttggaaccaa tgaagatcac ttcacatttg atatacgttt acgtacatat 6360 attgatgatg agtattattt gaattgtttg ctagataatt tacacataga gcgggaaaat 6420 attctgggct atctatgtga aggtacattt tttcataggt accctgatta tcttaagcga 6480 attcttgcta cacttggacc aaatcaactt gtatctttga tgtctaatta tactgattca 6540 gattgtataa ctgataacat agatgtgaat cgatatgggt tcctgatgga gattagcaat 6600 tacttcagag ataaaaataa tatatatatg gcagaattgt gtgagacatt agagattgta 6660 gcaatgagca ctaatgtgaa catactaaat gttagaaacc ctgaaaaatt tataaacaac 6720 tgcaataaaa ttaagctcca tccattatgc catgaatatg tgatacataa atatcgtgca 6780 gatgaagaag caccatatta tagattattt agattagtta tgaaatacag atacaacaag 6840 agccctgtag agaaaatcat cctattcatc atcttgatat ttagatttta cattcatgaa 6900 tacatcgatg ttgaagctga gtttgaatat tg 6932 //