ID   HQ700824; SV 1; linear; genomic RNA; STD; VRL; 1362 BP.
XX
AC   HQ700824;
XX
DT   13-JUL-2012 (Rel. 113, Created)
DT   13-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Cucurbit aphid-borne yellows virus isolate CABYV-R-PH11 RdRp protein
DE   (RdRp), coat protein (CP), and movement protein (MP) genes, partial cds.
XX
KW   .
XX
OS   Cucurbit aphid-borne yellows virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1362
RA   Knierim D., Tsai W.S., Dolores L.M., Kenyon L.;
RT   "First report of Suakwa aphid-borne yellows virus infecting cucurbit crops
RT   in the Philippines";
RL   Unpublished.
XX
RN   [2]
RP   1-1362
RA   Knierim D., Tsai W.S., Dolores L.M., Kenyon L.;
RT   ;
RL   Submitted (13-DEC-2010) to the INSDC.
RL   Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL   74199, Taiwan
XX
DR   MD5; 9a9a662e929036f0d0d576432f776eb7.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1362
FT                   /organism="Cucurbit aphid-borne yellows virus"
FT                   /host="Luffa acutangula (ridge patola)"
FT                   /isolate="CABYV-R-PH11"
FT                   /mol_type="genomic RNA"
FT                   /country="Philippines:Pangasinan province"
FT                   /collection_date="29-Jun-2010"
FT                   /db_xref="taxon:91753"
FT   gene            <1..576
FT                   /gene="RdRp"
FT   CDS             <1..576
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RdRp protein"
FT                   /db_xref="GOA:I6MCP3"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:I6MCP3"
FT                   /protein_id="AEK07947.1"
FT                   /translation="SVSDWLLEDDMEVRNRLTLDINETTKRLRSAWLKCISNSVLSLSD
FT                   GTLLSQQVPGVQKSGSYNTSSSNSRIRVMAAYHCGAEWAMAMGDDALESVDSNLAKYAE
FT                   LGFKVEVSPKLEFCSHIFEREDLAVPVNKAKMIYKLIHGYEPECGNAEVLINYLTACFA
FT                   VLNELRSDPQLVATLHQWLVLPVQPQKI"
FT   misc_feature    577..776
FT                   /note="intergenic NCR"
FT   gene            777..>1362
FT                   /gene="CP"
FT   CDS             777..>1362
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:I6MCP5"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:I6MCP5"
FT                   /protein_id="AEK07949.1"
FT                   /translation="MNTAVARNQNAGRRRRRNQRPSRRNRVVVVNPIGGPPRGRRQRRN
FT                   RRRANRGGRARGGSPGETFVFSKDNLAGSSSGSITFGPSLSESPAFSSGILKAYHEYKI
FT                   IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWTAKQINGMEW
FT                   HDATEDQFKILYKGNGSSSVAGSFRITIKCQV"
FT   gene            805..>1362
FT                   /gene="MP"
FT   CDS             805..>1362
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:I6MCP4"
FT                   /protein_id="AEK07948.1"
FT                   /translation="MQGGAGDEISALHGATAWLWSTRLGDHRAEDDNDETADALIEEAE
FT                   LEEEAQAKHSYFQRTISRAVPQEVSLSGRLFQRAQHSALEYSRPTMNIRSSWSSWSSSP
FT                   RPLPPPRVPSLMSWTPTASLAPSNPRLISLESQRMDCEDGQLSRLTGWNGTTQPKTNSR
FT                   SSTKEMDLPRLRVASGSPSSARS"
XX
SQ   Sequence 1362 BP; 375 A; 336 C; 336 G; 315 T; 0 other;
     agcgtttcgg actggctcct tgaagatgat atggaagtcc gaaaccgcct gacgctggac        60
     ataaatgaga ccaccaagcg cctgagatcc gcttggttga aatgcatctc gaatagcgtc       120
     ctcagcctct ccgatgggac actcttgtca caacaagtcc ccggagtgca gaaatccggc       180
     agctataata cctcatcctc caactcgagg attcgagtga tggctgcata tcattgcgga       240
     gctgagtggg cgatggcgat gggcgacgac gccctcgagt cagtcgattc aaacctagcg       300
     aaatacgctg agctaggttt taaagtcgag gtttccccaa aactggaatt ttgttcacat       360
     atttttgaac gtgaggacct cgccgttccg gttaacaaag ccaaaatgat atataagtta       420
     atacatggct atgaaccgga atgtggcaac gctgaggtct tgattaatta tctgaccgcc       480
     tgttttgcag ttctcaatga attgcggtca gatcctcagc tcgttgcaac tctccatcag       540
     tggctggttc ttccagtgca gccacaaaag atataaaggg gagtataaag aacactagcc       600
     aagcatacac gagttgcaag cgttggaagt taaagcctcg ttacaaagag tccacacaat       660
     agattataaa tttctcgcag gattttctag cggtctattg ttagcgatac ctgtaacggt       720
     agtaggactc tattttgtct acctaaagat ttcagcacac gtgcgatcaa tcgttaatga       780
     atacggccgt ggctagaaat caaaatgcag ggaggcgcag gcgacgaaat cagcgccctt       840
     cacggcgcaa ccgcgtggtt gtggtcaacc cgattggggg accaccgcgc ggaagacgac       900
     aacgacgaaa ccgccgacgc gctaatcgag gaggcagagc tagaggagga agcccaggcg       960
     aaacattcgt attttcaaag gacaatctcg cgggcagttc ctcaggaagt atcactttcg      1020
     ggccgtctct ttcagagagc ccagcattca gctctggaat actcaaggcc taccatgaat      1080
     ataagatcat catggtccag ttggagttca tctccgaggc ctcttccacc tcctcgggtt      1140
     ccatctctta tgagttggac ccccactgca agcttagctc cctccaatcc acgattaata      1200
     agtttggaat cacaaagaat ggattgcgaa gatggacagc taagcagatt aacgggatgg      1260
     aatggcacga cgcaaccgaa gaccaattca agatcctcta caaaggaaat ggatcttcct      1320
     cggttgcggg tagcttcagg atcaccatca agtgccaggt cc                         1362
//