ID   HQ700823; SV 1; linear; genomic RNA; STD; VRL; 1361 BP.
XX
AC   HQ700823;
XX
DT   13-JUL-2012 (Rel. 113, Created)
DT   13-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Cucurbit aphid-borne yellows virus isolate CABYV-C-PH1 RdRp protein (RdRp),
DE   coat protein (CP), and movement protein (MP) genes, partial cds.
XX
KW   .
XX
OS   Cucurbit aphid-borne yellows virus
OC   Viruses; Riboviria; Luteoviridae; Polerovirus.
XX
RN   [1]
RP   1-1361
RA   Knierim D., Tsai W.S., Dolores L.M., Kenyon L.;
RT   "First report of Suakwa aphid-borne yellows virus infecting cucurbit crops
RT   in the Philippines";
RL   Unpublished.
XX
RN   [2]
RP   1-1361
RA   Knierim D., Tsai W.S., Dolores L.M., Kenyon L.;
RT   ;
RL   Submitted (13-DEC-2010) to the INSDC.
RL   Virology, AVRDC - The World Vegetable Center, PO Box 42, Shanhua, Tainan
RL   74199, Taiwan
XX
DR   MD5; 180f02147164466cd88fa2f793aba139.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1361
FT                   /organism="Cucurbit aphid-borne yellows virus"
FT                   /host="Cucumis sativus (cucumber)"
FT                   /isolate="CABYV-C-PH1"
FT                   /mol_type="genomic RNA"
FT                   /country="Philippines:Manila"
FT                   /collection_date="19-May-2010"
FT                   /db_xref="taxon:91753"
FT   gene            <1..576
FT                   /gene="RdRp"
FT   CDS             <1..576
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RdRp protein"
FT                   /db_xref="GOA:I6MCP0"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="UniProtKB/TrEMBL:I6MCP0"
FT                   /protein_id="AEK07944.1"
FT                   /translation="SVSDWLLEDDMEVRNRLTLDLNETTRRLRAAWLYGISNSVLCLSD
FT                   GTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGAEWAMAMGDDALESACSNLERYRS
FT                   LGFKVEESSKLEFCSHIFEREDLAIPVNKAKMLYKLIHGYEPECGNVEVLINYLAACFS
FT                   ILNELRSDPSLVETLHQWLVLPVQPQKI"
FT   misc_feature    577..775
FT                   /note="intergenic NCR"
FT   gene            776..>1361
FT                   /gene="CP"
FT   CDS             776..>1361
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:I6MCP1"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:I6MCP1"
FT                   /protein_id="AEK07945.1"
FT                   /translation="MNTAVVRNQNAGRRRRRNQRSIRRDRVVVVNPSGGPPRGRRQRRN
FT                   RRRPNRGGRARGRSPGETFVFSKDNLTGSSSGSITFGPSLSESPAFSSGILKAYHEYKI
FT                   IMVQLEFISEASSTSSGSISYELDPHCKLSSLQSTINKFGITKNGLRRWAARQINGMEW
FT                   HDATEDQFKILYKGNGSSSVAGSFRITIKCQV"
FT   gene            804..>1361
FT                   /gene="MP"
FT   CDS             804..>1361
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:I6MCP2"
FT                   /protein_id="AEK07946.1"
FT                   /translation="MQGGGGEEISALYGATAWLWSTPLGDHRAEDDNEETADALIEEAE
FT                   LEEGAQAKHSYFQRTISRAVPQEVSPSGRLYQRAQHSALEYSRPTMNIRSSWSSWSSSP
FT                   RPLPPPRAPSLMSWTPIASSAPSNPRLINLESPRMDYDVGQLGRSTGWNGMTQLRTNSK
FT                   SSIKGTDLPRLQAASGSPSNARS"
XX
SQ   Sequence 1361 BP; 367 A; 340 C; 341 G; 313 T; 0 other;
     agcgtttcgg actggcttct cgaagatgat atggaagtcc gaaaccgcct gacgctggat        60
     ctaaatgaaa ccacgcgccg tttacgagca gcgtggttat atggtatatc aaatagcgtc       120
     ctctgccttt ctgacggaac attattagcg cagagagtcc caggcgtgca gaagagtggc       180
     agctataata cgtcatcgag caattcccgc attcgggtga tggctgccta ccactgcggc       240
     gcagaatggg caatggcgat gggcgatgac gccctagagt cagcttgctc gaacctcgag       300
     cgttacagat cgctcggttt taaagtcgag gagtcctcaa aactggaatt ctgttctcac       360
     atttttgaga gagaggacct cgccattccg gtcaacaagg ccaagatgct ttacaagctc       420
     atacatggct atgaaccgga atgtggcaat gtggaagtgc tgattaatta cttggccgcc       480
     tgcttttcaa ttctaaatga gttgcggtcc gatccttccc ttgtcgaaac tctccaccag       540
     tggctggttc ttccagtgca gccacaaaag atataagggg agtataaaga acactagcca       600
     agcacacgcg agttgcaagc gttggaagta taagtctcgt tacaaagagt ccacacaata       660
     gattataaat ttctcgcagg attttctagc ggtctattgt ctgctatacc catcacggta       720
     ataggactct attttgtcta cctaaagatt tcagcacacg tgcgagcaat cgttaatgaa       780
     tacggccgtg gttagaaatc aaaatgcagg gaggcggagg cgaagaaatc agcgctctat       840
     acggcgcgac cgcgtggttg tggtcaaccc ctctggggga ccaccgcgcg gaagacgaca       900
     acgaagaaac cgccgacgcc ctaatcgagg aggcagagct agaggaagga gcccaggcga       960
     aacattcgta ttttcaaagg acaatctcac gggcagttcc tcaggaagta tcaccttcgg      1020
     gccgtcttta tcagagagcc cagcattcag ctctggaata ctcaaggcct accatgaata      1080
     taagatcatc atggtccagc tggagttcat ctccgaggcc tcttccacct cctcgggctc      1140
     catctcttat gagttggacc cccattgcaa gctcagctcc ctccaatcca cgattaataa      1200
     atttggaatc accaagaatg gattacgacg ttgggcagct aggcagatca acgggatgga      1260
     atggcatgac gcaactgagg accaattcaa aatcctctat aaagggaacg gatcttcctc      1320
     ggttgcaggc agcttcagga tcaccatcaa atgccaggtc c                          1361
//