ID HQ698591; SV 1; linear; genomic DNA; STD; VRL; 2744 BP. XX AC HQ698591; XX DT 07-FEB-2011 (Rel. 107, Created) DT 07-FEB-2011 (Rel. 107, Last updated, Version 1) XX DE Radish leaf curl virus isolate Varanasi, complete genome. XX KW . XX OS Radish leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2744 RA Sinha D.P., Saxena S., Singh M., Tiwari S.K.; RT ; RL Submitted (11-DEC-2010) to the INSDC. RL Biotechnology Division, Indian Institute of Vegetable Research, P.B.-01, RL P.O.-Jhakhini, Shahanshahpur, Varanasi, U.P. 221 305, India XX DR MD5; 22943fa341836cc2f4cfbc0095b342d4. XX FH Key Location/Qualifiers FH FT source 1..2744 FT /organism="Radish leaf curl virus" FT /segment="DNA-A" FT /host="Capsicum annuum" FT /isolate="Varanasi" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="D.P. Sinha" FT /collection_date="Aug-2010" FT /db_xref="taxon:435646" FT gene 146..502 FT /gene="AV2" FT CDS 146..502 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:A9XCL4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A9XCL4" FT /protein_id="ADW66585.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDL FT IPVIRARNYVEATSRYNHFHARFEGTSPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCS" FT gene 306..1076 FT /gene="AV1" FT CDS 306..1076 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="responsible for encapsidation of viral DNA and FT insect transmission" FT /db_xref="GOA:A9XCL6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A9XCL6" FT /protein_id="ADW66586.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRVAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1073..1471) FT /gene="AC3" FT CDS complement(1073..1471) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:E9NQF2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E9NQF2" FT /protein_id="ADW66587.1" FT /translation="MDSRTGELITAAQAENGVFIWEIHYRLYFKITEHHNRPFTMKEDI FT IKVQIQFNYNLRKALEMHKCFLVYRIWMTSQPQTGRFLRVFKTQVLKYLDNLGVISINN FT VIRSVDHVLWNVLQHIVYVEQYSIKFNI" FT gene complement(1212..1616) FT /gene="AC2" FT CDS complement(1212..1616) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein" FT /db_xref="GOA:E9NQF3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E9NQF3" FT /protein_id="ADW66588.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRHAKKGNRRRRVDLPCGCSYFIALA FT CHNYGFTHRGTHHCSSSREWRVYLGDSLSAVFQDNRTPQPSIHNERRHNQSPNTVQLQP FT EESVGDAQVFSSLPNLDDFTASDWSFLKGL" FT gene complement(1519..2598) FT /gene="AC1" FT CDS complement(1519..2598) FT /codon_start=1 FT /gene="AC1" FT /product="replicase" FT /db_xref="GOA:E9NQF4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E9NQF4" FT /protein_id="ADW66589.1" FT /translation="MAPPKQFQIYAKNYFLTYPKCSLTKEEALSQLQNLQTPVNKKYIK FT ICRELHENGEPHLRVLIQFEGKYKCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYM FT EKDGDTLDSGEFQIDGRSARGGQQTANDAYAAALNAGSKEALRIIKELAPKDYVLQFHN FT LNANLDRIYTPPLEVYVSPFSSSSFDQVPEELEEWAAENVVSAAARANRPISVVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNIIDDVDPHYLKHFKEFMGAQRDWL FT SNTKYGKPEQIKGGIPTIFLCNPGPNSSYKVFLDEEKNAAQNWALKNATFITLEGPLYS FT GSNQSAAQACQEGEQTSSC" XX SQ Sequence 2744 BP; 745 A; 544 C; 618 G; 837 T; 0 other; accggatggc cgcgatttat tttggggccc ccacaaagca ctaactgaca atgacatgtg 60 gtccaatgag aatcgttcct cgtagcctaa ttgttttgtg gtcccctcta taaacttagt 120 gcgcaagctg tgtttcacat tcaccatgtg ggatccgtta ttgaatgagt ttcccgaaac 180 cgttcacggt tttaggtgta tgttagcagt taaatatctg cagttagtag aaaatacgta 240 ttccccagat actctgggat acgatttaat tagggatttg attccagtaa taagggccag 300 gaattatgtc gaagcgacca gcagatataa tcatttccac gcccgcttcg aaggtacgtc 360 gccgtctcaa cttcgacagc ccatatgtga gccgtgttgc tgcccccatt gtccgcgtca 420 ccaaagcaaa agcatgggcg aacaggccca tgaacagaaa gcccaggatg tacaggatgt 480 acagaagtcc agatgttcct agaggatgtg aaggcccatg taaggttcag tcctttgagt 540 ccagacatga tattcagcat ataggtaaag tcatgtgtgt cagtgatgtt actcgtggaa 600 ctgggcttac ccatagagtg ggtaaaaggt tttgtgttaa gtctgtttat gttttgggca 660 agatctggat ggatgaaaat attaaaacta agaatcacac taatagtgtg atgttctttc 720 tagttaggga tcgtagacct gtagataaac cccaagattt tggagaggta tttaacatgt 780 ttgataatga gcccagtacg gctactgtga agaatgttca tcgtgatagg tatcaagttc 840 ttcggaaatg gcatgcaact gttaccggtg gacaatatgc gtcaaaggaa caagccctcg 900 tgaagaagtt tgttagggtt aataattatg ttgtatataa ccagcaagaa gctggcaagt 960 atgagaatca ttctgagaat gcgttaatgt tgtatatggc atgtactcat gcctctaacc 1020 cagtgtatgc tactttgaag atacggatct atttctatga ttccgtaaca aattaaatat 1080 taaattttat tgaatattgt tcgacatata caatgtgttg taatacattc cataaaacat 1140 gatcaactga tctgattaca ttattaatac tgataactcc taaattatct aaatatttta 1200 aaacttgagt cttaaagacc cttaagaaac gaccagtctg aggctgtgaa gtcatccaga 1260 ttcggtagac tagaaaacac ttgtgcatct ccaacgcttt cctcaggttg tagttgaact 1320 gtatttggac tttgattatg tcttctttca ttgtgaatgg acggttgtgg tgttctgtta 1380 tcttgaaata cagccgataa tgaatctccc agataaacac gccattctct gcttgagctg 1440 cagtgatgag ttccccggtg cgtgaatcca taattgtgac aggctagtgc tatgaaatat 1500 gaacatccac aaggtagatc aacacgacga cgtctgttcc ccttcttggc atgcctgtgc 1560 tgcactttga ttggaacctg agtagagtgg gccttcgagg gtgatgaagg tcgcattctt 1620 taaagcccaa ttctgtgcag cattcttctc ttcatccaag aacactttat aactggaatt 1680 gggtcctgga ttgcagagga agatagtggg aattccgcct ttaatttgtt ctggctttcc 1740 gtactttgta tttgaaagcc agtccctttg ggcccccatg aattctttaa agtgctttag 1800 gtagtgggga tcgacgtcat caatgatatt gtaccaggca tcattattgt agaccttagg 1860 gctaaggtct agatgtccac acaaataatt atgtggtccc agtgacctag cccacattgt 1920 cttccctgtc ctactatcac cctcaatcac tacacttatt ggtctattgg cccgcgcagc 1980 ggcactgacg acgttctcgg cagcccattc ctcaagttct tccggaactt gatcaaaaga 2040 agaagaagaa aaaggagaaa cataaacctc cagaggaggt gtataaatcc tatctaaatt 2100 agcatttaaa ttatggaatt gtaatacata atcttttgga gctaactcct taatgattct 2160 aagagcctcc ttactgcctg cgttaagcgc tgcggcgtaa gcgtcgttgg ctgtctgttg 2220 tccccctcta gcagatcgtc cgtcgatctg aaactctccg gagtcgaggg tgtctccgtc 2280 cttctccata taggacttga catcggagct tgatttagct ccctgaatgt tcggatggaa 2340 atgtgctgac ctggttgggg atacgaggtc gaagaatctg ttatttttgc acttgtattt 2400 gccttcgaac tggatgagca cgcgaagatg aggttcccca ttttcatgaa gctctctgca 2460 gattttaatg tattttttgt ttactggggt ttgtaggttt tgtagttggg aaagtgcttc 2520 ctctttagta agggagcatt tgggataagt aaggaaataa tttttggcat atatctgaaa 2580 ttgtttggga ggagccattg acttggtcaa tcggtaccca gaactagtct tatggcaatt 2640 ggtgaacggt accctatata tagtgggtac tgaatggcaa tatttgtaat tatgaaagaa 2700 attcaaaatc ctcacgctcc aatcgcggcc atccgtataa tatt 2744 //