ID HQ693450; SV 1; circular; genomic DNA; STD; VRL; 2688 BP. XX AC HQ693450; XX DT 05-AUG-2011 (Rel. 109, Created) DT 04-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Maize streak virus isolate MSV-A_ZM_Chi1_Z6-2008, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2688 RX DOI; 10.1128/JVI.00640-11. RX PUBMED; 21715477. RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G., RA Rybicki E.P., Varsani A.; RT "Reconstructing the history of maize streak virus strain a dispersal to RT reveal diversification hot spots and its origin in southern Africa"; RL J. Virol. 85(18):9623-9636(2011). XX RN [2] RP 1-2688 RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M., RA Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.; RT ; RL Submitted (08-DEC-2010) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch, RL Cape Town, WP 7701, South Africa XX DR MD5; 18adbde39b532c4afd92b99c3025e3e5. XX FH Key Location/Qualifiers FH FT source 1..2688 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_ZM_Chi1_Z6-2008" FT /mol_type="genomic DNA" FT /country="Zambia" FT /lat_lon="13.9 S 28.82 E" FT /collection_date="2008" FT /db_xref="taxon:10821" FT CDS 1..306 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:A5JLB8" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:A5JLB8" FT /protein_id="AEL32320.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT CDS 317..1051 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:A5JLB9" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:A5JLB9" FT /protein_id="AEL32321.1" FT /translation="MSTSKRKRGDDSNWSKRVPKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1559..2377) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:A5JLD8" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5JLD8" FT /protein_id="AEL32322.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHSTTKEEYLSMIQKELPY FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPQSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDNVSSHQMKDQESRASTSSAQQEQENLLGPEA" XX SQ Sequence 2688 BP; 679 A; 640 C; 696 G; 673 T; 0 other; atggatccac agaacgccct gtattatcag ccgcgggtac ccacagcagc tccggcatcc 60 gcaggagtgc cgtggagtcg cgtaggcgag gtagctattt tgagctttgt tgcattgatt 120 tgcttttacc tgctttacct ttgggtgctg agagacctta tcttagttct gaaggctcga 180 caaggcagat ccacggagga gctgatattt ggaggacaag ctgtggatag gagcaaccct 240 atccctaatc taccagcacc accaagtcag ggcaatcccg ggccatttgt tccgggcacg 300 ggataagcat tcagccatgt ccacgtccaa gaggaagcgg ggagatgatt cgaattggag 360 taagcgggtg cctaagaaga agccttcttc agctgggctg aagagggcgg gaagcaaggc 420 cgataggcca tccctccaaa tccagacact ccagcatgct gggaccacca tgataactgt 480 cccatccgga ggagtatgtg acctcatcaa cacctatgcc cgaggatctg acgagggcaa 540 tcgccacacc agcgagactc tcacgtacaa gatcgccatc gactaccact tcgttgccga 600 cgcggcagcc tgccgctact ccaacaccgg aaccggtgta atgtggctgg tgtatgacac 660 cactcccggc ggacaagctc cgaccccgca aactatattt gcctaccctg acacgctgaa 720 agcgtggccg gccacatgga aggtgagccg ggagctgtgt catcgcttcg tggtgaaacg 780 gcgatggttg ttcaacatgg agaccgacgg gcggattggt tcggacattc ctccctcgaa 840 tgcaagttgg aagccttgca agcgcaacat ctacttccac aagttcacta gcgggttggg 900 agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc agagaggagc 960 gttgtacatg gtcattgccc ccggcaatgg tcttacattt actgcccatg ggcagacccg 1020 tctgtacttt aagagtgttg gcaaccagta atgaataaaa actcccgttt tattatatct 1080 gatgatgctg aaagcttaca ttaatatgtc gtgcgatggc acgaaaaaac acacgcaatc 1140 aatacagggg ggtagtaggc gggcggctaa gggtggtgct cggcgggcag aacatcgaaa 1200 aatcaagatc tatctgaatg tactgcctcc gtaggaggca gctcaggggg agaataccac 1260 ttctcccccg gcgacataat gtaaatgacg cagtttgcct cgaaatactc cagctgccct 1320 ggagtcattt ccttcatcca atcttcatcc gagttggcga ggattattgt aggcttagac 1380 ttcttctgca ccttcttctt cttaccatac ttggggttta caatgaaatc cctctgacag 1440 ccaactaact gtttccaaca aggacagaat ttaaacggga tatcatctac gatgttgtag 1500 attgcgtctt cgttgtatga agaccaatca acattatttt gccagtaatt atgaacccct 1560 aggcttctgg cccaagtaga ttttcctgtt cttgttgggc cgacgatgta gaggctctgc 1620 tttcttgatc tttcatctga tgactggata cattatccat ccattggagg tcagaaattg 1680 catcctcgag ggtataacag gtaggttgaa ggagcatgta agcttcggga ctaacctgga 1740 agatgttagg ctggagccaa tcattgattg actcattaca aagtaaatca ggtgaggatt 1800 gcggatgagg attggtgaac tcttcctgaa tctcaggaaa aagcttattt gcagagtatt 1860 caaaatactg caattttgtg gaccaatcat agggaagctc tttctggatc atggagaggt 1920 actcttcctt ggtagtagag tgtgaaataa tgtctcgcat tatttcatct ttggaaggtt 1980 ttttttcctt aacttctgaa tcagattttc ctaggaaggg ggacttccta ggaatgaaag 2040 tacctctctc aaacatagcc agaggttcct tgaggatgta atccctcacc ctgtttactg 2100 acttggcact ctgaatgttt gggtgaaacc cattaatatc aaagaacctt gagtccgata 2160 ttcttaccgg cttctctgtt tgaagcaatg catgtaaatg caaacttcca tctttatgtg 2220 cctcccgggc acatagaatg tacttgggaa tccaacgaac aacgagctcc cagatcatct 2280 gacaggcgat ttcaggattt tctggacact ttggataggt gaggaacgtg ttagcgttcc 2340 ggtgtgagaa ctgacggttg gatgaggagg aggccatagc cgacgacgga ggctgaggct 2400 gagggatggc agactgggag ctccaaactc tatagcatac ctgtgcgcct tcgaaatccg 2460 ccgctccctt gtcttatagt ggttgtgaat gggccggacc gggccggccc agcaggaaaa 2520 gaaggcgcgc actaatatta ccgcgccttc ttttcctgcg agggcccggt agggcccgag 2580 cgatttgatg taaagcctgg tcctgctttg tatgatttat ctaaagcagc ccaatctaaa 2640 gaaaccggtc ccgggcacta taaattgcct aacaagtgcg attcactc 2688 //