ID HQ693433; SV 1; circular; genomic DNA; STD; VRL; 2690 BP. XX AC HQ693433; XX DT 05-AUG-2011 (Rel. 109, Created) DT 04-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Maize streak virus isolate MSV-A_ZA_Por3_Ta14-2008, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2690 RX DOI; 10.1128/JVI.00640-11. RX PUBMED; 21715477. RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G., RA Rybicki E.P., Varsani A.; RT "Reconstructing the history of maize streak virus strain a dispersal to RT reveal diversification hot spots and its origin in southern Africa"; RL J. Virol. 85(18):9623-9636(2011). XX RN [2] RP 1-2690 RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M., RA Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.; RT ; RL Submitted (08-DEC-2010) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch, RL Cape Town, WP 7701, South Africa XX DR MD5; 5ae78e48d54d56d29f9c79c86cff0988. XX FH Key Location/Qualifiers FH FT source 1..2690 FT /organism="Maize streak virus" FT /host="sugarcane" FT /isolate="MSV-A_ZA_Por3_Ta14-2008" FT /mol_type="genomic DNA" FT /country="South Africa" FT /lat_lon="30.7 S 30.37 E" FT /collection_date="2008" FT /db_xref="taxon:10821" FT CDS 1..306 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:B7SB69" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:B7SB69" FT /protein_id="AEL32269.1" FT /translation="MDPQNALYYQPRVPTAAPTSGGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGIPGPFVPGTG" FT CDS 317..1051 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:G0YHZ3" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:G0YHZ3" FT /protein_id="AEL32270.1" FT /translation="MSTSKRKRGDDSNWNKRVPKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNTSWNPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1561..2379) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:B7SB72" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B7SB72" FT /protein_id="AEL32271.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKAVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKQEYLSMIQKELPF FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSLSSHQMKDQESRASTSSAQQEPENLLGPEA" XX SQ Sequence 2690 BP; 690 A; 629 C; 693 G; 678 T; 0 other; atggatccac agaacgccct gtattatcag ccgcgggtac ccacagcagc tccgacatcc 60 ggaggagtgc cgtggagtcg cgtaggcgag gtagctattt tgagctttgt tgcattgatt 120 tgcttttacc tgctttacct ttgggtgctg agagacctta tcttagttct gaaggctcga 180 caaggcagat ccacggagga gctgatattt ggtggacaag ctgtggatag gagcaaccct 240 atccctaatc taccagcacc accaagtcag ggcattcccg ggccatttgt tccaggcacg 300 ggataagcaa tcagccatgt ccacgtccaa gaggaagcgg ggagatgatt cgaattggaa 360 taagcgggtg cctaagaaga agccatcttc agctgggctg aagagggctg gaagcaaggc 420 cgataggcca tccctccaaa tccagacact ccagcatgcg gggaccacca tgataacggt 480 cccatctgga ggagtatgtg acctcatcaa cacctatgcc cgaggatctg acgagggcaa 540 ccggcacacc agcgagactc tgacgtacaa gatcgccgtc gactaccact tcgttgccga 600 cgcggctgcc tgccgctact ccaacaccgg aaccggtgta atgtggctgg tgtatgacac 660 cactcccggc ggacaagctc cgaccccgca aactatattt gcctaccctg acacgctaaa 720 agcgtggccg gccacatgga aagtgagccg ggagctgtgt catcgcttcg tggtgaaacg 780 gcgatggttg ttcaacatgg agaccgacgg tcggattggt tcggatatcc ctccctcgaa 840 tacaagttgg aatccttgca agcgcaacat ctacttccac aagttcacga gtgggttggg 900 agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc agagaggagc 960 cttgtacatg gtcattgccc ccggcaatgg ccttactttt actgcccatg ggcagacccg 1020 tctgtacttt aagagtgttg gcaaccagta atgaataaaa actcccgttt tattatattt 1080 gatgaatgct gaaagcttac attaatatgt cgtgcgatgg cacgaaaaaa cacacgcaaa 1140 caatacaggg cggtagtcgg cgggcggcta agggtggtgc tcggcgggca gaacatcgaa 1200 aaatcaagat ctatatgaat tacacttcct ccgtaggagg aagcacaggg ggagaatacc 1260 atttctcccc cggcgacata atgtaaatga tgcagtttgc ctcgaaatac tccagctgcc 1320 ctggagtcat ttccttcatc caatcttcat ccgagttggc gaggattatt gtaggcttag 1380 acttcttctg cacttttttc ttcttaccat acttggggtt tacaatgaaa tccctctgac 1440 agccaactaa ctgtttccaa caaggacaga atttaaacgg aatatcatct acgatgttgt 1500 agattgcgtc ttcgttgtat gaagaccaat caacattatt ttgccagtaa ttatgaaccc 1560 ctaggcttct ggcccaagta gattttccgg ttcttgttgg gccgacgatg tagaggctct 1620 gctttcttga tctttcatct gatgactgga tagagaatcc atccattgga ggtcagaaat 1680 tgcatcctcg agggtataac aggtaggttg aaggagcatg taagcttcgg gactaacctg 1740 gaagatgtta ggctggagcc aatcgttgat tgactcatta caaagtaaat caggtgagga 1800 gggtggatga ggattggtga actcttcctg aatctcagga aaaagcttat ttgcagagta 1860 ttcaaaatac tgcaattttg tggaccaatc aaaggggagc tctttctgga tcatggagag 1920 gtactcttgt ttggaggtag cgtgtgaaat aatgtctcgc attatttcat ctttagaagg 1980 ctttttttcc tttacctctg aatcagattt tcctaggaag ggtgacttcc taggaatgaa 2040 agtacctctc tcaaacacag ccagaggttc cttgagaatg taatccctca cccggttaac 2100 tgacttggca ctctgaatat ttgggtgaaa cccatttata tcaaagaacc ttgagtcaga 2160 tatccttacc gccttctctg tctggagcaa tgcatgtaaa tgcaaacttc catctttatg 2220 tgcctctcgg gcacatagaa tgtacttggg aatccaacga acgacgagct cccagatcat 2280 ctgacaggcg atttcaggat tttctggaca ctttggatag gttaggaacg tgttagcgtt 2340 cctgtgtgag aactgacggt ttgatgagga ggaggccata gccgacgacg gaggctgagg 2400 ctgagggatg gcagactggg aggtcgaaac tctatagtat acctgtgcgc cttcgaaatc 2460 cgccgctccc ttgtcttata gtggttgtaa atgggccgga ccgggccggc ccagcaggaa 2520 aagaaggcgc gcactaatat taccgcgcct tcttttcctg cgagggaccg gtagggaccg 2580 agcgctttga tttaaagctt ggtcctgctt tgtatgattt atctaaagca gcccaatcta 2640 aagaaaccgg tcccgggcac tataaattgc ctaacaagtg cgattcattc 2690 //