ID HQ693420; SV 1; circular; genomic DNA; STD; VRL; 2688 BP. XX AC HQ693420; XX DT 05-AUG-2011 (Rel. 109, Created) DT 04-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Maize streak virus isolate MSV-A_ZA_Mak1_M22K-1988, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2688 RX DOI; 10.1128/JVI.00640-11. RX PUBMED; 21715477. RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G., RA Rybicki E.P., Varsani A.; RT "Reconstructing the history of maize streak virus strain a dispersal to RT reveal diversification hot spots and its origin in southern Africa"; RL J. Virol. 85(18):9623-9636(2011). XX RN [2] RP 1-2688 RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M., RA Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.; RT ; RL Submitted (08-DEC-2010) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch, RL Cape Town, WP 7701, South Africa XX DR MD5; 50d80e98c906251ebb4f63ccb733972b. XX FH Key Location/Qualifiers FH FT source 1..2688 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_ZA_Mak1_M22K-1988" FT /mol_type="genomic DNA" FT /country="South Africa" FT /lat_lon="27.42 S 32.22 E" FT /collection_date="1988" FT /db_xref="taxon:10821" FT CDS 1..306 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:A5JLB8" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:A5JLB8" FT /protein_id="AEL32230.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT CDS 317..1051 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:G0YHV4" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:G0YHV4" FT /protein_id="AEL32231.1" FT /translation="MSTSKRKRGDDANWSKRVTKKKPSSAALKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1560..2378) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:G0YHV5" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G0YHV5" FT /protein_id="AEL32232.1" FT /translation="MASSSSNRQFSHRNVNTFLTYPKCPENPEIACQMIWELVVRWIPK FT YIVCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKSPFLGKYDSEVKEKKPSKDEIMRDIISHSTSKEEYLSMIQKEFPY FT DWATKLQYFEYSANKLFPEIQEEFTNPHPQSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQEQESLLGPEA" XX SQ Sequence 2688 BP; 684 A; 650 C; 684 G; 670 T; 0 other; atggatccac agaacgcctt gtattatcag ccgcgggtac ccacagcagc tccggcatcc 60 gcaggagtgc cgtggagtcg cgtaggcgag gtagctattt tgagctttgt tgcactgatt 120 tgcttttact tgctttacct ttgggtgctg agagacctta tcttagttct gaaggctcga 180 caaggcaggt ccacggagga gctgatattt ggaggacaag ctgtggatag gagcaaccct 240 atccctaatc taccagcacc accaagtcag ggcaatcccg ggccatttgt tccaggcacg 300 ggataagcat tcagccatgt ccacgtccaa gaggaagcgt ggagatgatg cgaactggag 360 taagcgggtg actaagaaga agccttcttc agctgcgctg aagagggctg gaagcaaggc 420 cgataggcca tccctccaaa tccagacact ccagcatgct gggaccacca tgataacggt 480 cccatccgga ggagtatgtg acctcatcaa cacctatgcc cgaggatctg acgagggcaa 540 ccgccacacc agcgagactc tcacgtacaa gatcgccatc gactaccact tcgttgccga 600 cgcggcagcc tgccgctact ccaacaccgg aaccggtgta atgtggctgg tgtatgacac 660 cactcccggc ggacaagctc cgaccccgca aactatattt gcctaccctg acacgctaaa 720 agcgtggccg gccacatgga aggtgagccg ggagctgtgt catcgcttcg tggtgaaacg 780 gcgatggttg ttcaacatgg agaccgacgg tcggattggt tcggatatcc ctccctcgaa 840 tgcaagttgg aagccctgca agcgcaacat ctacttccac aagttcacga gcgggttggg 900 agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc agagaggagc 960 tttgtacatg gtcattgccc ccggcaatgg ccttacattt actgcccatg ggcagacccg 1020 tctgtacttt aagagtgttg gcaaccagta atgaataaaa actccgtttt tattatattt 1080 catgaatgct gaaagcttac attaatatgt cgtgcgatgg cacgcaaaaa cacacgcaat 1140 caatacaggg gggtagtagg cgggcggcta agggtggtgc tcggcgggca aaacatcgaa 1200 aaatcaagat ctatctgaat gtactgcctc cgtaggaggc agctcagggg gagaatacca 1260 cttctccccc ggcgacataa tgtaaatgac gcaatttgcc tcgaaatact ccagctgccc 1320 tggagtcatt tccttcatcc aatcttcatc cgagttggcg aggattattg taggcttaga 1380 cttcttctgc accttcttct tcttaccata cttggggttt acaatgaaat ccctctgaca 1440 gccaactaac tgtttccaac aaggacagaa tttaaacggg atatcatcta cgatgttgta 1500 gattgcgtct tcgttgtatg aagaccaatc aacattattt tgccagtaat tatgaacccc 1560 taggcttctg gcccaagtag actttcctgt tcttgttggg ccgacgatgt agaggctctg 1620 ctttcttgat ctttcatctg atgactggat acagaatcca tccattggag gtcagaaatt 1680 gcatcctcga gggtataaca ggtaggttga aggagcatgt acgcttcggg actaacctgg 1740 aagatgttag gctggagcca atcgttgatt gactcattac aaagtaaatc aggtgaggat 1800 tggggatgag gattggtgaa ctcttcctga atctcaggaa aaagcttatt tgcagagtat 1860 tcaaaatact gcaattttgt ggcccaatca tagggaaact ctttctggat catggagagg 1920 tactcttcct tggaagtaga gtgtgaaata atgtctcgca ttatttcatc tttggaaggc 1980 tttttttcct taacttctga atcatatttt cctaggaagg gggacttcct aggaatgaaa 2040 gtacctctct caaacatagc cagaggttcc ttgagaatgt aatccctcac cctgtttact 2100 gacttggcac tctgaatgtt tgggtgaaac ccattaatat caaagaacct tgagtccgat 2160 attcttaccg gcttctctgt ttgaagcaat gcatgtaaat gcaaacttcc atctttgtgt 2220 gcctctcggg cacagacaat atacttgggt atccaacgaa caacgagctc ccagatcatc 2280 tgacaggcga tttcaggatt ttctggacac tttggatagg ttaagaacgt gttcacgttc 2340 ctgtgtgaga actgacggtt ggatgaggag gaggccatat ccgacgacgg aggatgaggc 2400 tgagggatgg cagatgggga gctctcaact ctataccaac cggtgcgcct tcgaaatccg 2460 ccgccccccc ctcttatagt ggttgtgaac gggccggacc gggccggccc agcaggaaaa 2520 gaaggcgcgc actaatatta ccgcgccttc ttttcctgcg agggcccggt agggcccgag 2580 cgatttgatt taaagcctgg tcctgctttg tatgatttat ctaaagcagc ccaatctaaa 2640 gaaaccggtc ccgggcacta taaattgcct aacaagtgcg attcattc 2688 //