Dbfetch
ID HQ693417; SV 1; circular; genomic DNA; STD; VRL; 2690 BP. XX AC HQ693417; XX DT 05-AUG-2011 (Rel. 109, Created) DT 04-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Maize streak virus isolate MSV-A_ZA_Koe3_M42K-1989, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2690 RX DOI; 10.1128/JVI.00640-11. RX PUBMED; 21715477. RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G., RA Rybicki E.P., Varsani A.; RT "Reconstructing the history of maize streak virus strain a dispersal to RT reveal diversification hot spots and its origin in southern Africa"; RL J. Virol. 85(18):9623-9636(2011). XX RN [2] RP 1-2690 RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M., RA Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.; RT ; RL Submitted (08-DEC-2010) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch, RL Cape Town, WP 7701, South Africa XX DR MD5; f01888f2c31a7fc0839bf0b43a9566e9. XX FH Key Location/Qualifiers FH FT source 1..2690 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_ZA_Koe3_M42K-1989" FT /mol_type="genomic DNA" FT /country="South Africa" FT /lat_lon="24.9 S 27.45 E" FT /collection_date="1989" FT /db_xref="taxon:10821" FT CDS 1..306 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:G0YHU4" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:G0YHU4" FT /protein_id="AEL32221.1" FT /translation="MDPQNALYYQPRVPTAAPTSGGVSWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQVNPGPFVPGTG" FT CDS 317..1051 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:B6CZ91" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:B6CZ91" FT /protein_id="AEL32222.1" FT /translation="MSTSKRKRGDDSNWNKRVPKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNTSWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1561..2379) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:A5JLJ6" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5JLJ6" FT /protein_id="AEL32223.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPF FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQEPENLLGPEA" XX SQ Sequence 2690 BP; 691 A; 634 C; 687 G; 678 T; 0 other; atggatccac agaacgccct gtattatcag ccgcgggtac ccacagcagc tccgacatcc 60 ggaggagtgt cgtggagtcg cgtaggcgag gtagctattt tgagctttgt tgcattgatt 120 tgcttttacc tgctttacct ttgggtgctg agagacctta tcttagttct gaaggctcga 180 caaggcagat ccacggagga gctgatattt ggtggacaag ctgtggatag gagcaaccct 240 atccctaatc taccagcacc accaagtcag gtcaatcccg ggccatttgt tccaggcacg 300 ggataagcaa tcagccatgt ccacgtccaa gaggaagcgg ggagatgatt cgaattggaa 360 taagcgggtc cctaagaaga agccatcttc agctgggctg aagagggctg gaagcaaggc 420 cgataggcca tccctccaaa tccagacact ccagcatgcg gggaccacca tgataacggt 480 cccctctgga ggagtatgtg acctcatcaa cacctatgcc cgaggatctg acgagggcaa 540 ccgccacacc agcgagactc tgacgtacaa gatcgccgtc gactaccact tcgttgctga 600 cgcggcagcc tgccgctact ccaacaccgg aaccggtgta atgtggctgg tgtatgacac 660 cactcccggc ggacaagctc cgaccccgca aactatcttt gcctaccctg acacgctaaa 720 agcgtggccg gccacatgga aagtgagccg ggagctgtgt catcgcttcg tggtgaaacg 780 gcgatggttg ttcaacatgg agaccgacgg tcggattggt tcggatattc ctccctcgaa 840 tacaagttgg aagccttgca agcgcaacat ctacttccac aagttcacga gtgggttggg 900 agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc agagaggagc 960 cttgtacatg gtcattgccc ccggcaatgg ccttacattt actgcccatg ggcagacccg 1020 tctgtacttt aagagtgttg gcaaccagta atgaataaaa acgcccgttt tattatatct 1080 gatgaatgct gaaagcttac attaatatgt cgtgcgatgg cacgaaaaaa cacacgcaat 1140 caatacaggg gggtagtcgg cgggcggcta agggtggtgc tcggcgggca aaacatcgaa 1200 aaatcaagat ctatatgaat tacacttcct ccgtaggagg aagcacaggg ggagaatacc 1260 acttctcccc cggcgacata atgtaaatga tgcagtttgc ctcgaaatac tccagctgcc 1320 ctggagtcat ttccttcatc caatcttcat ccgagttggc gaggattatt gtaggcttag 1380 acttcttctg cacctttttc ttcttaccat acttggggtt tacaatgaaa tccctctgac 1440 agccaactaa ctgtttccaa caaggacaga atttaaacgg aatatcatct acgatgttgt 1500 agattgcgtc ttcgttgtat gaagaccaat caacattatt ttgccagtaa ttatgaaccc 1560 ctaggcttct ggcccaagta gattttccgg ttcttgttgg gccgacgatg tagaggctct 1620 gctttcttga tctttcatct gatgactgga tacagaatcc atccattgga ggtcagaaat 1680 tgcatcctcg agggtataac aggtaggttg aaggagcatg taagcttcgg gactaacctg 1740 gaagatgtta ggctggagcc aatcgttgat tgactcatta caaagtaaat caggtgagga 1800 gggtggatga ggattggtga actcttcctg aatctcagga aaaagcttat ttgcagagta 1860 ttcaaaatac tgcaattttg tggaccaatc aaagggaagc tctttctgga tcatggagag 1920 gtactcttct ttcgaagtag cgtgtgaaat aatgtctcgc attatttcat ctttagaagg 1980 ctttttttcc tttacctctg aatcagattt tcctaggaag ggggacttcc taggaatgaa 2040 agtacctctc tcaaacacag ccagaggttc cttgagaatg taatccctca ctctgttaac 2100 tgacttggca ctctgaatat ttgggtgaaa cccatttata tcaaagaacc ttgagtcaga 2160 tatccttacc ggcttctctg tctgaagcaa tgcatgtaaa tgcaaacttc catctttatg 2220 tgcctctcgg gcacatagaa tgtacttggg aatccaacga acgacgagct cccagatcat 2280 ctgacaggcg atttcaggat tttctggaca ctttggatag gttaggaacg tgtttgcgtt 2340 cctgtgtgag aactgacggt tggatgagga ggaggccata gccgacgacg gaggttgagg 2400 ctgagggatg gcagactggg agctccaaac tctatagtat acctgtgcgc cttcgaaatc 2460 cgccgctccc ttgttttgta gtggttgtaa atgggccgga ccgggccggc ccagcaggaa 2520 aagaaggcgc gcactaatat taccgcgcct tcttttcctg cgagggcccg gtagggaccg 2580 agcgctttga tttaaagctt ggtcctgctt tgtatgattt atctaaagca gcccaatcta 2640 aagaaaccgg tcccgggcac tataaattgc ctaacaagtg cgattcattc 2690 //