ID HQ693401; SV 1; circular; genomic DNA; STD; VRL; 2690 BP. XX AC HQ693401; XX DT 05-AUG-2011 (Rel. 109, Created) DT 04-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Maize streak virus isolate MSV-A_ZA_Blu2_Ta29-2008, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2690 RX DOI; 10.1128/JVI.00640-11. RX PUBMED; 21715477. RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G., RA Rybicki E.P., Varsani A.; RT "Reconstructing the history of maize streak virus strain a dispersal to RT reveal diversification hot spots and its origin in southern Africa"; RL J. Virol. 85(18):9623-9636(2011). XX RN [2] RP 1-2690 RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M., RA Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.; RT ; RL Submitted (08-DEC-2010) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch, RL Cape Town, WP 7701, South Africa XX DR MD5; 5fbfba91acae442766ed143303ee4066. XX FH Key Location/Qualifiers FH FT source 1..2690 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_ZA_Blu2_Ta29-2008" FT /mol_type="genomic DNA" FT /country="South Africa" FT /lat_lon="30.59 S 30.52 E" FT /collection_date="2008" FT /db_xref="taxon:10821" FT CDS 1..306 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:B2BX37" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:B2BX37" FT /protein_id="AEL32173.1" FT /translation="MDPQNALYYQPRVPTAAPTSGGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT CDS 317..1051 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:B6CZ91" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:B6CZ91" FT /protein_id="AEL32174.1" FT /translation="MSTSKRKRGDDSNWNKRVPKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNTSWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1561..2379) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:B2BX40" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B2BX40" FT /protein_id="AEL32175.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPF FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSLSSHQMKDQESRASTSSAQQEPENLLGPEA" XX SQ Sequence 2690 BP; 688 A; 635 C; 692 G; 675 T; 0 other; atggatccac agaacgccct gtattatcag ccgcgggtac ccacagcagc tccgacatcc 60 ggaggagtgc cgtggagtcg cgtaggcgag gtagctattt tgagctttgt tgctttgatt 120 tgcttttacc tgctttacct ttgggtgctg agagacctta tcttagttct gaaggctcga 180 caaggcagat ccacggagga gctgatattt ggtggacaag ctgtggatag gagcaaccct 240 atccctaatc tacctgcacc accaagtcag ggcaatcccg ggccatttgt tccaggcacg 300 ggataagcaa tcagccatgt ccacgtccaa gaggaagcgg ggagatgatt cgaattggaa 360 taagcgggtg cctaagaaga agccatcttc agctggtctg aagagggctg ggagcaaggc 420 cgataggcca tccctccaaa tccagacact ccagcatgct gggaccacca tgataacggt 480 cccctccgga ggagtatgtg acctcatcaa cacttatgcc cgaggatctg acgagggcaa 540 ccgccacacc agcgagactc tgacgtacaa gatcgccgtc gactaccact tcgttgccga 600 cgcggctgcc tgccgctact ccaacaccgg caccggtgta atgtggctgg tgtatgacac 660 cactcccggc ggacaagctc cgaccccgca aactatattt gcctaccctg acacgctaaa 720 agcgtggccg gccacatgga aagtgagccg ggagctgtgt catcgcttcg tggtgaaacg 780 gcgatggttg ttcaacatgg agaccgacgg tcggattggt tcggatatcc ctccctcgaa 840 tacaagttgg aagccttgca agcgcaacat ctacttccac aagttcacga gtgggttggg 900 agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc agagaggagc 960 gctgtacatg gtcattgccc caggcaatgg ccttactttt actgcccatg ggcagacccg 1020 tctgtacttt aagagtgttg gcaaccagta atgaataaaa acgcccgttt tattatatct 1080 gatgaatgct gaaagcttac attaatatgt cgtgcgatgg cacgaaaaaa cacacgcaaa 1140 caatacaggg gggtagtcgg cgggcggcta agggtggtgc tcggcgggca gaacatcgaa 1200 aaatcaagat ctatatgaat tacacttcct ccgtaggagg aagcacaggg ggagaatacc 1260 atttctcccc cggcgacata atgtaaatga tgcagtttgc ctcgaaatac tccagttgcc 1320 ctggagtcat ttccttcatc caatcttcat ccgagttggc gaggattatt gtaggcttag 1380 acttcttctg caccttcttc ttcttaccat acttggggtt cacaatgaaa tccctctgac 1440 agccaactaa ctgtttccaa caaggacaga atttaaacgg aatatcatct acgatgttgt 1500 agattgcgtc ttcgttgtat gaagtccaat caacattatt ttgccagtaa ttatgaatcc 1560 ctaggcttct ggcccaagta gattttccgg ttcttgttgg gccgacgatg tagaggctct 1620 gctttcttga tctttcatct gatgactgga tagagaatcc atccattgga ggtcagaaat 1680 tgcatcctcg agggtataac aggtaggttg aaggagcatg taagcttcgg gactaacctg 1740 gaagatgtta ggctggagcc aatcattgat tgactcatta caaagtaaat caggtgagga 1800 gggtggatga ggattggtga actcttcctg aatctcaggg aaaagcttat ttgcagagta 1860 ttcaaaatac tgcaattttg tggaccaatc aaagggaagc tctttctgga tcatggagag 1920 gtactcttct ttggaagtag cgtgtgaaat aatgtctcgc attatttcat ctttagaagg 1980 ctttttttcc tttacctctg aatcagattt tcctaggaag ggagacttcc taggaatgaa 2040 agtacctctc tcaaacacag ccagaggttc cttgagaatg taatccctca cccggttaac 2100 tgacttggca ctctgaatat ttgggtgaaa cccatttata tcaaagaacc ttgagtcaga 2160 tatccttacc ggcttctctg tctggagcaa tgcatgtaaa tgcaaacttc catctttatg 2220 tgcctctcgg gcacatagaa tgtacttggg aatccaacga acgacgagct cccagatcat 2280 ctgacaggcg atttcaggat tttctggaca ctttggatag gttaggaacg tgttagcgtt 2340 cctgtgtgag aactgacggt tggatgagga ggaggccata gccgacgacg gaggctgagg 2400 ctgagggatg gcagactggg agctccaaac tctatagtat acctgtgcgc cttcgaaatc 2460 cgccgctccc ttgtcttata gtggttgtaa atgggccgga ccgggccggc ccagcaggaa 2520 aagaaggcgc gcactaatat taccgcgcct tcttttcctg cgagggcccg gtagggaccg 2580 agcgctttga tttaaagctt ggtcctgctt tgtatgattt atctaaagca gcccaatcta 2640 aagaaaccgg tcccgggcac tataaattgc ctaacaagtg cgattcattc 2690 //