ID HQ693333; SV 1; circular; genomic DNA; STD; VRL; 2687 BP. XX AC HQ693333; XX DT 05-AUG-2011 (Rel. 109, Created) DT 04-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Maize streak virus isolate MSV-A_KE_Nye2_Ken12-2008, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2687 RX DOI; 10.1128/JVI.00640-11. RX PUBMED; 21715477. RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G., RA Rybicki E.P., Varsani A.; RT "Reconstructing the history of maize streak virus strain a dispersal to RT reveal diversification hot spots and its origin in southern Africa"; RL J. Virol. 85(18):9623-9636(2011). XX RN [2] RP 1-2687 RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M., RA Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.; RT ; RL Submitted (08-DEC-2010) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch, RL Cape Town, WP 7701, South Africa XX DR MD5; 9932f17054fdc72d2be96205ab2e7151. XX FH Key Location/Qualifiers FH FT source 1..2687 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_KE_Nye2_Ken12-2008" FT /mol_type="genomic DNA" FT /country="Kenya" FT /lat_lon="0.5 S 36.94 E" FT /collection_date="2008" FT /db_xref="taxon:10821" FT CDS 1..306 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:A5JLB8" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:A5JLB8" FT /protein_id="AEL31969.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT CDS 317..1051 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:G0YH43" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:G0YH43" FT /protein_id="AEL31970.1" FT /translation="MSTSKRKRGDDSNWSKRVHKKKPSSAGLKRAGIKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1560..2378) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:G0YH44" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G0YH44" FT /protein_id="AEL31971.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKSPFLGKSDSEGKEKKPSKDEIMRDIISHSTSKEEYLSMIQKEFPY FT DWATKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNETINDWLQPNIFQVSPQAYML FT LQPNCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQEPENLLGPEA" XX SQ Sequence 2687 BP; 685 A; 642 C; 686 G; 674 T; 0 other; atggatccac agaacgccct gtattatcag ccgcgggtac ccacagcagc tccggcatcc 60 gcaggagtgc cgtggagtcg cgtaggcgag gtagctattt tgagctttgt tgcactgatt 120 tgcttttacc tgctttacct ttgggtgctg agagacctta tcttagttct gaaggctcga 180 caaggcagat ccacggagga gctgatattt ggaggacaag ctgtggatag gagcaaccct 240 atccctaatc taccagcacc accaagtcag ggcaatcccg ggccatttgt tccaggcacg 300 ggataagcat tcagccatgt ccacgtccaa gaggaagcgg ggagatgatt cgaattggag 360 taagcgggtg cataagaaga agccctcttc agctgggctg aagcgggctg gaatcaaggc 420 cgataggcca tccctccaaa tccagacact ccagcatgct gggaccacca tgataactgt 480 cccatccgga ggagtatgtg acctcatcaa cacctatgcc cgcggatctg acgagggcaa 540 ccgccacacc agcgagactc tcacgtacaa gatcgccatt gactaccact tcgttgccga 600 cgcggcagcc tgccgctact ccaacaccgg taccggtgta atgtggctgg tgtatgacac 660 cactcccggc ggacaagctc cgaccccgca aactatattt gcctaccctg acacgctaaa 720 agcgtggccg gccacatgga aggtgagccg ggagctgtgt catcgcttcg tggtgaaacg 780 gcgatggttg ttcaacatgg agaccgacgg gcggattggt tcggacattc ctccctcgaa 840 tgcaagttgg aagccctgca agcgcaacat ctacttccac aagttcacga gcgggttggg 900 agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc agagaggagc 960 gttgtacatg gtcattgccc ccggcaatgg tcttacattt actgcccatg ggcagacccg 1020 tctgtacttt aagagtgttg gcaaccagta atgaataaaa actcccgttt tattatatct 1080 gatgaatgct gaaagcttac attaatatgt cgtgcgatgg cacgaaaaaa cacacgcaat 1140 caatacaggg gggtagtagg cgggcggcta agggtggtgc tcggcgggca aaacatcgaa 1200 aaatcaagat ctatctgaat gtactgcctc cgtaggaggc agctcagggg gagaatacca 1260 cttctccccc ggcgacataa tgtaaatggt gcaatttgcc tcgaaatact ccagctgccc 1320 tggagtcatt tccttcatcc aatcttcatc cgagttggcg aggattattg taggcttgga 1380 cttcttctgc accttcttct tcttaccata cttggggttt acaatgaaat ccctctgaca 1440 gccaactaac tgtttccaac aaggacagaa tttaaacgga atatcatcta cgatgttgta 1500 gattgcgtct tcgttgtatg aagaccaatc aacattattt tgccagtaat tatgaacccc 1560 taggcctctg gcccaagtag attttccggt tcttgttggg ccgacgatgt agaggctctg 1620 ctttcttgat ctttcatctg atgactggat acagaatcca tccattggag gtcagaaatt 1680 gcatcttcga gggtataaca gttaggttga aggagcatgt aagcttgggg actgacctgg 1740 aagatattag gctggagcca atcattgatt gtctcattac aaagtaaatc aggtgaggag 1800 ggtggatgag gattggtgaa ctcttcctga atttcaggaa aaagcttatt tgcagagtat 1860 tcaaaatact gcaattttgt ggcccaatca tagggaaact ctttctggat catagagagg 1920 tactcttcct tggaagtaga gtgtgaaata atgtctctca ttatttcatc tttcgaaggc 1980 tttttttcct ttccctctga atcagatttt cctaggaagg gggacttcct aggaatgaaa 2040 gtacctctct caaacatagc cagaggttcc ttgagaatgt aatccctcac cctgtttact 2100 gacttggcac tctgaatgtt tgggtgaaac ccattaatat caaagaacct tgagtcggat 2160 atccttaccg gcttctctgt ctgaagcaat gcatgtaaat gcaaacttcc atctttatgt 2220 gcctctcggg cacatagaat atatttggga atccaacgaa caacgagctc ccatatcatc 2280 tgacaggcga tttcaggatt ttctggacac tttggatagg ttaggaacgt attagcgttc 2340 ctgtgtgaga actgacggtt ggatgaggag gaggccatat ccgacgacgg aggatgaggc 2400 tgagggatgg cagaatggga gctctcaact ctataccaac cggtgcgcct tcgaaatccg 2460 ccgccccctg tcttatagtg gttgtgaatg ggccggaccg ggccggccca gcaggaaaag 2520 aaggcgcgca ctaatattac cgcgccttct tttccggcta gggcccggta gggcccgagc 2580 gatttgatgt aaagcttggt cctgctttgt atgatttatc taaagcagcc caatctaaag 2640 aaaccggtcc cgggcactat aaattgccta acaagtgcga ttcattc 2687 //