Dbfetch
ID HQ693298; SV 1; circular; genomic DNA; STD; VRL; 2689 BP. XX AC HQ693298; XX DT 05-AUG-2011 (Rel. 109, Created) DT 04-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Maize streak virus isolate MSV-A_CF_Bang3_Car41-2008, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2689 RX DOI; 10.1128/JVI.00640-11. RX PUBMED; 21715477. RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G., RA Rybicki E.P., Varsani A.; RT "Reconstructing the history of maize streak virus strain a dispersal to RT reveal diversification hot spots and its origin in southern Africa"; RL J. Virol. 85(18):9623-9636(2011). XX RN [2] RP 1-2689 RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M., RA Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.; RT ; RL Submitted (08-DEC-2010) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch, RL Cape Town, WP 7701, South Africa XX DR MD5; 3a884e9f15ada0f7192d4c972add3ef1. XX FH Key Location/Qualifiers FH FT source 1..2689 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_CF_Bang3_Car41-2008" FT /mol_type="genomic DNA" FT /country="Central African Republic" FT /lat_lon="4.83 N 23.12 E" FT /collection_date="2008" FT /db_xref="taxon:10821" FT CDS 1..306 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:A5JLB8" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:A5JLB8" FT /protein_id="AEL31864.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT CDS 317..1051 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q6LBI6" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:Q6LBI6" FT /protein_id="AEL31865.1" FT /translation="MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1560..2378) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:G0YGT9" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G0YGT9" FT /protein_id="AEL31866.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPF FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESIDDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSGQQEPENLLGPEA" XX SQ Sequence 2689 BP; 687 A; 641 C; 692 G; 669 T; 0 other; atggatccac agaacgccct gtattatcag ccgcgggtac ccacagcagc tccggcatcc 60 gcaggagtgc cgtggagtcg cgtaggcgag gtagctattt tgagctttgt tgcactgatt 120 tgcttttacc tgctttacct ttgggtgctg agagacctta tcttagttct gaaggctcga 180 caaggcagat ccacggagga gctgatattt ggaggacaag ctgtggatag gagcaaccct 240 atccctaatc taccagcacc accaagtcag ggcaatcccg ggccatttgt tccaggcacg 300 ggataagcat tcagccatgt ccacgtccaa gaggaagcgg ggagatgatt cgaattggag 360 taagcgggtg actaagaaga agccctcgtc agctgggctg aagagggctg gaagcaaggc 420 cgataggcca tccctccaaa tccagacact ccagcatgct gggaccacca tgataactgt 480 cccatccgga ggagtatgtg acctcatcaa cacctatgcc cgaggatctg acgagggcaa 540 ccgccacacc agcgagactc tcacgtacaa gatcgccatc gactaccact tcgttgccga 600 cgcggcagcc tgccgctact ccaacaccgg aaccggtgta atgtggctgg tgtatgacac 660 cactcccggc ggacaagctc cgaccccgca aactattttt gcctaccctg acacgctaaa 720 agcgtggccg gccacatgga aggtgagccg ggagctgtgt catcgcttcg tggtgaaacg 780 gcgatggttg ttcaacatgg agaccgacgg gcgtattggt tcggacattc ctccctcgaa 840 tgcaagttgg aagccttgca agcgcaacat ctacttccac aagttcacga gcgggttggg 900 agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc agagaggagc 960 gttgtacatg gtcattgccc caggcaatgg tcttacattt actgcccatg ggcagacccg 1020 tctgtacttt aagagtgttg gcaaccagta atgaataaaa actcccgttt tattatatct 1080 gatgaatgct gaaagcttac attaatatgt cgtgcgatgg cacgaaaaaa cacacgcaat 1140 caatacaggg gggtagtagg cgggcggcta agggtggtgc tcggcgggca gaacatcgaa 1200 aaatcaagat ctatctgaat gtactgcctc cgtaggaggc agctcagggg gagaatacca 1260 cttctccccc ggcgacataa tgtaaatgac gcagtttgcc tcgaaatact ccagctgccc 1320 tggagtcatt tccttcatcc aatcttcatc cgagttggcg aggattattg taggcttaga 1380 cttcttctgc accttcttct tcttaccata tttggggttt acaatgaaat ccctctgaca 1440 gccaactaac tgtttccaac aaggacagaa tttaaacgga atatcatcta cgatgttgta 1500 gattgcgtct tcgttgtatg aagaccaatc aacattattt tgccagtaat tatgaacccc 1560 taggcttctg gcccaagtag attttccggt tcttgttggc ccgacgatgt agaggctctg 1620 ctttcttgat ctttcatctg atgactggat acagaatcca tccattggag gtcagaaatt 1680 gcatcctcga gggtataaca ggtaggttga aggagcatgt atgcttcggg actaacctgg 1740 aagatgttag gctggagcca atcatcgatt gactcattac aaagtaaatc aggtgaggag 1800 ggtggatgag gattggtgaa ttcttcctga atctcaggaa aaagtttatt tgcagagtat 1860 tcaaaatact gcaattttgt ggaccaatca aagggaagct ctttctggat catggagagg 1920 tactcttctt tggaagtagc gtgtgaaata atgtctcgca ttatttcatc tttagaaggc 1980 tttttttcct ttacctctga atcagatttt cctaggaagg gggacttcct aggaatgaaa 2040 gtacctctct caaacacagc cagaggttcc ttgagaatgt aatccctcac cctgttaact 2100 gacttggcac tctgaatatt tgggtgaaac ccatttatat caaagaacct tgagtcagat 2160 atccttaccg gcttctctgt ctgaagcaat gcatgtaaat gcaaacttcc atctttatgt 2220 gcctctcggg cacatagaat atatttggga atccaacgaa caacgagctc ccagatcatc 2280 tggcaggcga tttcaggatt ctctggacac tttggatagg tgaggaacgt gttagcgttc 2340 ctgtgtgaga actgacggtt ggatgaggag gaggccatag ccgacgacgg aggctgaggc 2400 tgagggatgg cagactggga gctccaaact ctatagtata cctgtgcgcc ttcgaaatcc 2460 gccgctccct tgtcttatag tggttgtaaa cgggccggac cgggccggcc cagcaggaaa 2520 agaaggcgcg cactaatatt accgcgcctt cttttcctgc gagggcccgg tagggcccga 2580 gcgatttgat gtaaagcctg gtcctgcttt gtatgattta tctaaagcag cccattctaa 2640 agaatccggt cccgggcact ataaattgcc taacaagtgc gatgcattc 2689 //