ID HQ693295; SV 1; circular; genomic DNA; STD; VRL; 2688 BP. XX AC HQ693295; XX DT 05-AUG-2011 (Rel. 109, Created) DT 04-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Maize streak virus isolate MSV-A_CF_Bang1_Car39-2008, complete genome. XX KW . XX OS Maize streak virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2688 RX DOI; 10.1128/JVI.00640-11. RX PUBMED; 21715477. RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Lakoutene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.M., Briddon R.W., Markham P.G., RA Rybicki E.P., Varsani A.; RT "Reconstructing the history of maize streak virus strain a dispersal to RT reveal diversification hot spots and its origin in southern Africa"; RL J. Virol. 85(18):9623-9636(2011). XX RN [2] RP 1-2688 RA Monjane A.L., Harkins G.W., Martin D.P., Lemey P., Lefeuvre P., RA Shepherd D.N., Oluwafemi S., Simuyandi M., Zinga I., Komba E.K., RA Kakouttene D.P., Mandakombo N., Mboukoulida J., Semballa S., Tagne A., RA Tiendrebeogo F., Erdmann J.B., van Antwerpen T., Owor B.E., Flett B., RA Ramusi M., Windram O.P., Syed R., Lett J.-M., Peterschmitt M., RA Briddon R.W., Markham P.G., Rybicki E.P., Varsani A.; RT ; RL Submitted (08-DEC-2010) to the INSDC. RL Electron Microscope Unit, University of Cape Town, Private Bag, Rondebosch, RL Cape Town, WP 7701, South Africa XX DR MD5; 72759f78cf68f86fb83dcf4f44828d57. XX FH Key Location/Qualifiers FH FT source 1..2688 FT /organism="Maize streak virus" FT /host="maize" FT /isolate="MSV-A_CF_Bang1_Car39-2008" FT /mol_type="genomic DNA" FT /country="Central African Republic" FT /lat_lon="4.83 N 23.12 E" FT /collection_date="2008" FT /db_xref="taxon:10821" FT CDS 1..306 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:A5JLB8" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:A5JLB8" FT /protein_id="AEL31855.1" FT /translation="MDPQNALYYQPRVPTAAPASAGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPAPPSQGNPGPFVPGTG" FT CDS 317..1051 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:G0YGS9" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:G0YGS9" FT /protein_id="AEL31856.1" FT /translation="MSTSKRKRGDDSNWSKRVTKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPAKWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNASWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT CDS complement(1560..2378) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:G0YGT0" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G0YGT0" FT /protein_id="AEL31857.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAMFERGTFIPRKCPFLGKSDSEIKEKKPSKDEIMRDIISHSTSKEEYLSMIQKEIPY FT DWATKLQYFEYSANKLFPEIQEEFTNPHPQSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSGQQEQENLLGPEA" XX SQ Sequence 2688 BP; 688 A; 641 C; 686 G; 673 T; 0 other; atggatccac agaacgccct gtattatcag ccgcgggtac ccacagcagc tccggcatcc 60 gcaggagtgc cgtggagtcg cgtaggcgag gtagctattt tgagctttgt tgcactgata 120 tgcttttacc tgctttacct ttgggtgctg agagacctta tcttagttct gaaggctcga 180 caaggcagat ccacggagga gctgatattt ggaggacaag ctgtggatag gagcaaccct 240 atccctaatc taccagcacc accaagtcag ggcaatcccg ggccatttgt tccaggcacg 300 ggataagcat tcagccatgt ccacgtccaa gaggaagcgg ggagatgatt cgaattggag 360 taagcgggtg actaagaaga agccctcttc agctgggctg aagcgggctg gaagcaaggc 420 cgataggcca tccctgcaaa tccagacact ccagcatgct gggaccacca tgataactgt 480 cccatccgga ggagtatgtg acctcatcaa cacctatgcc cgaggatcgg acgagggcaa 540 ccgccacacc agcgagactc tcacgtacaa gatcgccatc gactaccact tcgttgccga 600 cgcggcagcc tgccgctact ccaacaccgg aaccggtgta atgtggctgg tgtatgacac 660 cactcccggc ggacaagctc cgaccccgca aactatattt gcctaccctg acacgctaaa 720 agcgtggccg gccaaatgga aggtgagccg ggagctgtgt catcgcttcg tggtgaaacg 780 gcgatggttg ttcaacatgg aaaccgacgg gcggattggt tcggacattc ctccctcgaa 840 tgcaagttgg aagccttgca agcgcaacat ctacttccac aagttcacga gcgggttggg 900 agtgagaacg cagtggaaga atgtaacgga cggaggagtt ggtgccatcc agagaggagc 960 gttgtacatg gtcattgccc ccggcaatgg tcttacattt actgcccatg ggcagacccg 1020 tctgtacttt aagagtgttg gcaaccagta atgaataaaa actcccgttt tattatatct 1080 gatgaatgct gaaagcttac attaatatgt cgtgcgatgg cacgaaaaaa cacacgcaat 1140 caatacaggg gggtagtagg cgggcggcta agggtggtgc tcggcgggca aaacatcgaa 1200 aaatcaagat ctatctgaat gtactgcctc cgtaggaggc agctcagggg gagaatacca 1260 cttctccccc ggcgacataa tgtaaatgac gcagtttgcc tcgaaatact ccagctgccc 1320 tggagtcatt tctttcatcc aatcttcatc cgagttggcg aggattattg taggcttaga 1380 cttcttctgc accttcttct tcttaccata cttggggttt acaatgaaat ccctctgaca 1440 gccaactaac tgtttccaac aaggacagaa tttaaacggg atatcatcta cgatgttgta 1500 gattgcgtct tcgttatatg aagaccaatc aacattattt tgccagtaat tatgaacccc 1560 taggcttctg gcccaagtag attttcctgt tcttgttggc ccgacgatgt agaggctctg 1620 ctttcttgat ctttcatctg atgactggat acagaatcca tccattggag gtcagaaatt 1680 gcatcctcga gggtataaca ggtaggttga aggagcatgt aagcttcggg actgacctgg 1740 aagatgttag gctggagcca atcattgatt gactcattac aaagtaaatc aggtgaggat 1800 tgcggatgag gattggtgaa ctcttcctga atctcaggaa aaagcttatt tgcagagtat 1860 tcgaaatact gcaattttgt ggcccaatca tagggaatct ctttctggat catggagagg 1920 tactcttctt tggaagtaga gtgtgaaata atgtctcgca ttatttcatc tttggaaggc 1980 tttttttcct taatttctga atcagatttt cctaggaagg ggcacttcct aggaatgaaa 2040 gtacctctct caaacatggc cagaggttcc ttgagaatgt aatccctcac cctgtttact 2100 gacttggcac tctgaatgtt tgggtgaaac ccattaatat caaagaacct tgagtcggat 2160 atccttaccg gcttctctgt ctgaagcaat gcatgtaaat gcaaacttcc atctttatgt 2220 gcctctcggg cacatagaat atatttggga atccaacgaa caacgagctc ccatatcatc 2280 tgacatgcga tttcaggatt ttctggacac tttggatagg ttaggaacgt attagcgttc 2340 ctgtgtgaga actgacggtt ggatgaggag gaggccatat ccgacgacgg aggatgaggc 2400 tgtgggatgg cagaatggga gctctcaact ctataccata ccggtgcgcc ttcgaaatcc 2460 gccgccccct ctcttatagt ggttgtgaat gggccggacc gggccggccc agcaggaaaa 2520 gaaggcgcgc actaatatta ccgcgccttc ttttcctgcg agggcccggt agggcccgag 2580 cgatttgatg taaagcttgg tcctgctttg tatgatttat ctaaagcagc ccaatctaaa 2640 gaaaccggtc ccgggcacta taaattgcct aacaagtgcg attcatcc 2688 //