ID HQ682190; SV 1; linear; genomic DNA; STD; VRL; 2747 BP. XX AC HQ682190; XX DT 28-JUN-2011 (Rel. 109, Created) DT 28-JUN-2011 (Rel. 109, Last updated, Version 1) XX DE Radish leaf curl virus isolate Varanasi segment A, complete sequence. XX KW . XX OS Radish leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2747 RA Sinha D.P., Saxena S., Singh M., Tiwari S.K.; RT ; RL Submitted (06-DEC-2010) to the INSDC. RL Biotechnology, Indian Institute of Vegetable Research, P.B.-01, RL P.O.-Jhakhini, Shahanshahpur, Varanasi, U.P. 221 305, India XX DR MD5; 63af1b0a000ab34d21657c4b2d45f273. XX FH Key Location/Qualifiers FH FT source 1..2747 FT /organism="Radish leaf curl virus" FT /segment="A" FT /host="Capsicum annuum" FT /isolate="Varanasi" FT /mol_type="genomic DNA" FT /isolation_source="leaf curl showing plant" FT /collected_by="D.P.Sinha" FT /db_xref="taxon:435646" FT gene 146..457 FT /gene="AV2" FT CDS 146..457 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /db_xref="GOA:F8SUC6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:F8SUC6" FT /protein_id="AEI72603.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDM FT IPVIRARNYVEATSRYNHFHARFEGTSPSQLRQPICEPCCCPHCPRHQSISMGELPHV" FT gene 306..980 FT /gene="AV1" FT CDS 306..980 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:F8SUC7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:F8SUC7" FT /protein_id="AEI72604.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRVAAPIVRVTKALAWA FT NCPMYRKPRMYRMYRSPDVPRGCEGPCKVQSLSRHDIQHIGKVMCISDVTRGTGLTHRV FT GKRFCVKSVYVLGKIWMENIKTKNHTNSVMFFLVRDRRPVDIPQDFGEVFNMFDNEPST FT ATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSE FT NA" FT gene complement(1067..1468) FT /gene="AC3" FT CDS complement(1067..1468) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:F8SUC8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F8SUC8" FT /protein_id="AEI72605.1" FT /translation="MDSRTGELITAAQAENGVFIWEIQNGLYFKITEHHNRPFTMKEDI FT IKVQIQFNYNLRKALEMHKCFLVYRIWMTSQPQTGRFLSVFKTQVLKYLDNLGVISINN FT VIRVDHVLWNVLQHIVYVEQSYSIKFNIY" FT gene complement(1209..1613) FT /gene="AC2" FT CDS complement(1209..1613) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein" FT /db_xref="GOA:F8SUC9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F8SUC9" FT /protein_id="AEI72606.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRHAKKRNRRRRVDLPCGCSYFIALA FT CHNYGFTHRGTHHCSSSREWRVYLGDSKWPVFQDNRTPQPSIHNERRHNQSPNTVQLQP FT EESVGDAQVFSSLPNLDDFTASDWSFLKRL" FT gene complement(1516..2292) FT /gene="AC1" FT CDS complement(1516..2292) FT /codon_start=1 FT /gene="AC1" FT /product="replicase" FT /db_xref="GOA:F8SUD0" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F8SUD0" FT /protein_id="AEI72607.1" FT /translation="MEKDGDTLDWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALR FT IIKELAPKDYVLQFHNLNANLDRIYTPPLEEYETPFSSSSFDQVPEELEEWAAENVVSG FT AARANRPISVVIEGDSRTGKTMWARSLGPHNYLCRHLDLSPKVYNNDAWYNIIDDVDPH FT YLKHFKEFIGAQRDWLSNTKYGKPEQIKGGIPTIFLCNPGPNSSYKVFLDEELNAALKN FT WALKNATFITLEGPLYSGSNQSAAQACQEAEQTSSC" FT gene complement(2142..2450) FT /gene="AC4" FT CDS complement(2142..2450) FT /codon_start=1 FT /gene="AC4" FT /product="transcriptional regulation protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:F8SUD1" FT /protein_id="AEI72608.1" FT /translation="MKMGNLIFACSSSSKANTSAKITDSSTSYPQPGQHISIRTFRELN FT QAPMSSPIWRRTETPSTGESFRSTDDLLEADNRQPTTLTPQRLTQAVSQRLLESLRS" FT gene complement(2476..2601) FT /gene="AC1 part" FT CDS complement(2476..2601) FT /codon_start=1 FT /gene="AC1 part" FT /product="replicase" FT /db_xref="GOA:F8SUD2" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="UniProtKB/TrEMBL:F8SUD2" FT /protein_id="AEI72609.1" FT /translation="MAPPKQFQIYAKNYFLTYPKCSLTKEEALSQLQNLQTPVNI" XX SQ Sequence 2747 BP; 742 A; 538 C; 623 G; 844 T; 0 other; accggatggc cgcgatttat tatggggccc gcacaaagca ctaactgaca atgacatgtg 60 gtccaatgag aatcgttcct cgtagcctaa ttgttttgtg gtcccctcta taaacttagt 120 gcgcaagctg tgtttcacat tcaccatgtg ggatccgtta ttgaatgagt ttcccgaaac 180 cgttcacggt tttaggtgta tgttagcagt taaatatctg cagttagtag aaaatacgta 240 ttccccagat actctgggat acgatttaat tagggatatg attccagtaa taagggccag 300 gaattatgtc gaagcgacca gcagatataa tcatttccac gcccgcttcg aaggtacgtc 360 gccgtctcaa cttcgacagc ccatatgtga gccgtgttgc tgcccccatt gtccgcgtca 420 ccaaagcatt agcatgggcg aactgcccca tgtatagaaa gccaaggatg tacaggatgt 480 acagaagccc agatgtccct agaggatgtg aaggcccatg taaggtccag tcgttgtcta 540 gacatgacat tcagcatata ggtaaagtta tgtgtattag tgatgttact cgtggaactg 600 ggctgaccca tcgagtgggt aaaaggtttt gtgttaagtc tgtttatgtt ttgggcaaga 660 tctggatgga aaatattaaa actaagaatc acactaatag tgtgatgttc tttctagtta 720 gggatcgtag acctgtagat attccccaag attttggaga ggtatttaac atgtttgata 780 atgagcccag tacggctact gtgaagaatg ttcatcgtga taggtatcaa gttcttcgga 840 aatggcatgc aactgttact ggtggacaat atgcgtcaaa ggaacaagcc ctcgtgaaga 900 agtttgttag ggttaataat tatgttgtat ataaccagca agaagctggc aagtatgaga 960 atcattctga gaatgcgtaa atgttgtata tggcatgtac tcatgcctct aacccagtgt 1020 atgctacttt gaagatacgg atctatttct atgattccgt aacaaattaa taaatattaa 1080 attttattga atatgattgt tcgacatata caatgtgttg taatacattc cataaaacat 1140 gatcaactct gattacatta ttaatactga taactcctaa attatctaaa tattttaaaa 1200 cttgagtctt aaagacgctt aagaaacgac cagtctgagg ctgtgaagtc atccagattc 1260 ggtagactag aaaacacttg tgcatctcca acgctttcct caggttgtag ttgaactgta 1320 tttggacttt gattatgtct tctttcattg tgaatggacg gttgtggtgt tctgttatct 1380 tgaaatacag gccattttga atctcccaga taaacacgcc attctctgct tgagctgcag 1440 tgatgagttc cccggtgcgt gaatccataa ttgtgacagg ctagtgctat gaaatatgaa 1500 catccacaag gtagatcaac acgacgacgt ctgttccgct tcttggcatg cctgtgctgc 1560 actttgattg gaacctgagt agagtgggcc ttcgagggtg atgaaggtcg cattctttaa 1620 agcccaattc ttgagtgcag cattcaactc ttcatccaag aacactttat aactggaatt 1680 gggtcctgga ttgcagagga agatagtggg aattccgcct ttaatttgtt ctggctttcc 1740 gtactttgta tttgatagcc agtccctttg ggcgccgatg aattctttaa agtgctttag 1800 gtagtgcgga tcgacgtcat caatgatatt gtaccaggca tcattattgt agaccttagg 1860 gctaaggtct agatgtcgac acaaataatt atgtggtccc agtgacctag cccacattgt 1920 cttccctgtc ctactatcac cctcaatcac tacacttatt ggtctattgg cccgcgcagc 1980 cccactgacg acgttctcgg cagcccattc ctcaagttct tccggaactt gatcaaaaga 2040 agaagaagaa aaaggagttt catattcctc cagaggaggt gtataaatcc tatctaaatt 2100 agcatttaaa ttatggaatt gtaatacata atcttttgga gctaactcct taatgattct 2160 aagagcctct gacttactgc ctgcgttaag cgctgcggcg taagcgtcgt tggctgtctg 2220 ttgtccgcct ctagcagatc gtccgtcgat ctgaaactct ccccagtcga gggtgtctcc 2280 gtccttctcc atataggact tgacatcgga gcttgattta gctccctgaa tgttcggatg 2340 gaaatgtgct gacctggttg gggatacgag gtcgaagaat ctgttatttt tgcacttgta 2400 tttgccttcg aactggatga gcacgcgaag atgaggttcc ccattttcat gaagctctct 2460 gcagatttta atgtattaaa tgtttactgg ggtttgtagg ttttgtagtt gggaaagtgc 2520 ttcctcttta gtaagggagc atttgggata agtaaggaaa taatttttgg catatatctg 2580 aaattgtttg ggaggagcca ttgacttggt caatcggtac ccagaactag tcttatggca 2640 attggtgaac ggtagggtat atatagtggg tactgaatgg caatatttgt aattatgaaa 2700 gaaattcaaa atcctcacgc tccaatcgcg gccatccgta taatatt 2747 //