ID HQ681906; SV 1; linear; genomic RNA; STD; VRL; 6224 BP. XX AC HQ681906; XX DT 08-JUN-2011 (Rel. 109, Created) DT 08-JUN-2011 (Rel. 109, Last updated, Version 1) XX DE Cymbidium mosaic virus isolate HNXL, complete genome. XX KW . XX OS Cymbidium mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-6224 RX DOI; 10.1007/s11262-011-0592-x. RX PUBMED; 21442302. RA He Z., Jiang D., Liu A., Sang L., Li W., Li S.; RT "The complete sequence of Cymbidium mosaic virus from Vanilla fragrans in RT Hainan, China"; RL Virus Genes 42(3):440-443(2011). XX RN [2] RP 1-6224 RA He Z., Li S.F., Jiang D.M.; RT ; RL Submitted (23-NOV-2010) to the INSDC. RL State Key Laboratory of Biology of Plant Diseases and Insect Pests, RL Institute of Plant Protection, Chinese Academy of Agricultural Sciences, RL West 2 Yuanmingyuan Road, Haidian, Beijing 100193, China XX DR MD5; 038b61317e8942da5b90c038713265b6. XX FH Key Location/Qualifiers FH FT source 1..6224 FT /organism="Cymbidium mosaic virus" FT /host="Vanilla planifolia" FT /isolate="HNXL" FT /mol_type="genomic RNA" FT /country="China:Xinglong Tropical Botanical Garden, Haikou, FT Hainan province" FT /collection_date="Aug-2009" FT /db_xref="taxon:12178" FT 5'UTR 1..72 FT gene 73..4323 FT /gene="RdRp" FT /locus_tag="CymMVgp1" FT CDS 73..4323 FT /codon_start=1 FT /gene="RdRp" FT /locus_tag="CymMVgp1" FT /product="RNA dependent RNA polymerase" FT /db_xref="GOA:F8SUC0" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F8SUC0" FT /protein_id="AEH03003.1" FT /translation="MARVRDTLDRLRDPSVLTSINEEAHRHIRPVLASALVNCPYALTE FT EEADCLENLGVTVNPFAIQTHTHAAAKTVENRMLEIVGTHLPKEPSTFIFLKRSKLRYL FT RRAANNKDIFQNQHIEPKDLLRYDDESCEVMPECSTSTAYISDALHFLSYAQLGKIFQD FT SPKLKILLATLVLPVEALHRHPSLFPAIYTLNYHKDGFEYIPGNHAGGAYFHEYSTLQW FT LTLGKLIINDPLKVKKPLTLTVQLIESLGANHLLLITRGDLRTPKLRTFAKDTHALLPQ FT IFHPKGMNANKPLAKRRAMQLWLYAKSVKEVSERDLYAKVRQLIPTSELDLFDPVEVTH FT LVNYLLFISHLSSVSSYDDILSSNIFQHFTIPIENKIRELVQLFTGADQFNQLLKALDW FT QTFSYSMPVETIHTRAANYQVANTLRMCRDLPCDEYDRVKDVLRQLPDGVTLFEENDKQ FT DPSSSETEDSEDDTDSVDFNLPPTHDLPPNFDPLDKGKSIIVDTDSPSTSTAPAITFTA FT GINSSASTNILFGSFTPEADAPPLPPMEKLPWDLWIPLLEQHGFKGKSKLYKPTGELIC FT PITEIKTVPHCPFPDKVPDGCVLALKSIKRFATKMTMLSSRASAYTSDIKNCRTGKLLP FT AMNMPWKASLAYVTQHGDREIPGVVIHGAGGCGKSYAIQKWLRSCSDPCAATVVCPTLE FT LRNDWLNKIGSYEQTNIKTFEKALIQPVNNVVIFDDYTKLPPGYIETMVYHHHNLDLII FT LTGDPMQSAYHETNRDAYISLIPDASAIFSEYCEFNINATHRNVAELACLLGVYSERQG FT KLTVSFSAAPLSKGKVPILVPSRMKQEAFADVGNRCMTYAGCQGLTAPKIQILIDNHTT FT FCSEQTLYTCLSRAVDQIHFINTGPNSQAFWTKLESTPYLKAFLDNYREEQTERLTSTA FT PEPEVREPAAPKTHIPVENTSGLRIAALDLPEKHSREIFNKAHGFSNAIQGDGVAPMFQ FT HQQAKDETLFKATIDARLSITHPDENKREFAMKKDTGDVLFVNYKAIMNLPHEPVPFEP FT RLWNIRKAEVQNTYLAKPIANLINGTLRQSPDFPANKIALFLKSQWVKKIEKIGAIPVK FT PGQTIASFMQETVMLYGTMARYLRKMRQRYQPAHIFINCEKTPEDFNKFILEHWSHKQV FT AHTNDFTAFDQSQDAAMLQFEVIKARYFNIPEDVIEGYIQIKLTAEIFLGTLSIMRLSG FT EGPTFDANTECSIAYNATRYHINEDVTQVYAGDDMAMDHVCPEKSFKALEKKLKLTSKP FT LYPKQKPGDWADFCGWTITPYGIIKNPKKLDACLQLHTQLGDAHEVARSYALDAKYAYD FT LGDRIHEVLNVDEMTSHFNVIRQLHKLHQQDVLVPPEHTVATAVKSQPDVEDLWLRALS FT FPDWTDRAQLLKRV" FT gene 4330..5031 FT /gene="TGBp1" FT /locus_tag="CymMVgp2" FT CDS 4330..5031 FT /codon_start=1 FT /gene="TGBp1" FT /locus_tag="CymMVgp2" FT /product="triple gene block 1" FT /note="TGBP1" FT /db_xref="GOA:F8SUC1" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:F8SUC1" FT /protein_id="AEH03007.1" FT /translation="MELAYLVRLLEHNKFERTNLPLSSPLVVHGIAGSGKSTILTTFHH FT HYPAHPIFSHSPTLLDPSNRIYQQCITTDSVPDGAIVDEYNYKALDYSRCLALFGDPLQ FT LPHSLQPHYYSSRTYRYGPKLTSLLNDLFHLSITSLAPVDSLDYADPFVVDPSGFTIAD FT EEVYNFVSQQVPGTLLPLDTVGLEYSSVSFYCSDLRRCVVLRPLSTFIALTRAKGNLTI FT FDFNARFSSTT" FT gene 5006..5344 FT /gene="TGBp2" FT /locus_tag="CymMVgp3" FT CDS 5006..5344 FT /codon_start=1 FT /gene="TGBp2" FT /locus_tag="CymMVgp3" FT /product="triple gene block 2" FT /note="TGBP2" FT /db_xref="GOA:F8SUC2" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:F8SUC2" FT /protein_id="AEH03004.1" FT /translation="MPGLVPPPDHSKSLFVLAIGITVVSALFVLKSHTFPIAGDNIHRF FT PSGGQYKDGTKQINYCPPTHARYPKYPDYKWLAATAAIVIPLCLYISYHPGNNIRRICP FT CCNTYHHS" FT gene 5199..5474 FT /gene="TGBp3" FT /locus_tag="CymMVgp4" FT CDS 5199..5474 FT /codon_start=1 FT /gene="TGBp3" FT /locus_tag="CymMVgp4" FT /product="triple gene block 3" FT /note="TGBP3" FT /db_xref="GOA:F8SUC3" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:F8SUC3" FT /protein_id="AEH03005.1" FT /translation="MLGTRNTLTTSGLPLPPPLSSLSAYIFPTILAIIFAVFALVAIHI FT TTPEPFCTIHIDGASITITNCPDPAAILNKVAIGPWRGLSYHNNLK" FT gene 5477..6148 FT /gene="cp" FT /locus_tag="CymMVgp5" FT CDS 5477..6148 FT /codon_start=1 FT /gene="cp" FT /locus_tag="CymMVgp5" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:F8SUC4" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:F8SUC4" FT /protein_id="AEH03006.1" FT /translation="MGEPTPTPAATYSAADPTSAPKLADLAAIKYSPVTSSIATPEEIK FT AITQLWVNNLGLPADTVGTAAIDLARAYADVGASKSATLLGFCPTKPDVRRAALAAQIF FT VANVTPRQFCAYYAKVVWNLMLATNDPPANWAKAGFQEDTRFAAFDFFDAVDSTAALEP FT AEWQRRPTDRERAAHSVGKYGALARQRIQNGNLITNIAEVTKGHLGSTNTLYALPAPPT FT E" FT 3'UTR 6149..6224 XX SQ Sequence 6224 BP; 1655 A; 1788 C; 1216 G; 1565 T; 0 other; gaaaaccaaa cctcacgtct actcagccat tcgagcgaaa tagcagcccc agcataggca 60 atatcgcgct ccatggcccg agtacgtgac acccttgaca ggctccgtga tccgtcggtc 120 cttacctcaa ttaacgagga agcccaccga catatccgcc ctgtccttgc ctcggcactc 180 gtaaactgcc cttacgcatt gaccgaggag gaggccgact gtctcgaaaa tcttggcgtg 240 acagtcaatc ccttcgccat ccaaacgcat acacatgctg cagccaaaac tgttgaaaat 300 cgcatgttgg aaattgttgg cacccacctt cctaaagaac cctccacctt catattcctc 360 aagcggagca agcttcgcta cctacgacgc gctgccaata acaaagacat atttcaaaat 420 caacacattg agcctaaaga cttattgcgt tacgatgacg agtcttgtga agtaatgcca 480 gaatgctcca caagcacagc ctacatcagt gatgctctcc atttcttgag ctacgctcag 540 cttgggaaaa tattccagga ttctcccaag ctgaaaattc tgctggcaac cctggtcctc 600 cccgtggaag ccctccatag gcacccatct cttttccctg ccatctatac tttaaactac 660 cataaagatg gctttgaata tatacccggc aatcacgccg gaggtgccta cttccacgag 720 tactccactc tgcagtggtt gactctcggg aagctaatta tcaacgatcc tttgaaagta 780 aagaaacccc ttactcttac tgtgcaacta atagagagtc taggggctaa ccatctttta 840 cttatcaccc gaggggatct tcgcacaccc aaactgcgga cattcgctaa agatacccat 900 gctctattgc cacaaatatt ccatcctaag ggtatgaatg cgaacaaacc attagccaaa 960 cgtagagcta tgcagttgtg gctctacgcc aaatctgtca aagaggtgag cgaacgggat 1020 ctttatgcta aagtgaggca attgatcccg acttctgagt tagacctttt tgaccccgtg 1080 gaggtgaccc acttggtcaa ttacttacta ttcatcagtc acctttcctc cgtatcttcg 1140 tatgacgaca tcttgtcgtc taatatattc caacatttca ccatcccaat cgagaataag 1200 atacgggaat tggtccagct attcactgga gcggaccaat ttaatcaact gctcaaagct 1260 ctcgactggc aaacattttc ttactctatg ccagtagaga ccatccatac acgtgcggcc 1320 aattatcaag tcgctaacac gcttcgcatg tgcagagacc taccatgcga tgaatatgat 1380 cgtgtaaagg atgtcctcag acagctccct gacggagtga cgttgtttga ggaaaacgat 1440 aagcaagatc cctcaagctc tgaaaccgag gactctgagg atgacactga ctccgtcgat 1500 ttcaacctcc cacccactca tgacttgccc ccaaattttg atcctctaga caagggcaag 1560 tccattatcg ttgacactga cagcccctca acttccacgg cacctgccat cacttttact 1620 gccggtatca actcctcagc ctccacaaat attttatttg gaagcttcac acctgaggct 1680 gatgcccccc cccttcctcc catggaaaag ttaccatggg atctttggat tcccctactg 1740 gaacaacatg gctttaaagg aaagagcaag ctgtacaagc ccacgggtga actaatctgc 1800 cccataactg aaatcaaaac agttccccac tgcccctttc ccgataaagt cccggatggc 1860 tgtgtgcttg cgctcaaatc tattaagcgt tttgccacaa aaatgaccat gctcagttct 1920 cgagcttccg cctacacctc cgatattaag aattgtagga ctgggaagct cctacccgcc 1980 atgaacatgc cctggaaagc ctctctcgcc tatgtcactc aacatggtga tagagaaatt 2040 cctggcgtcg tgatccatgg tgccggtggc tgtggcaaat cttatgccat tcaaaaatgg 2100 ttgagaagct gctctgatcc ttgtgcagct accgtggtat gcccaactct agaactacgt 2160 aatgactggc tcaataagat tggaagctat gaacaaacga atatcaaaac ttttgagaaa 2220 gctttaatcc agccagtcaa caacgtagtt atctttgatg actacaccaa gctaccccct 2280 gggtacattg agaccatggt gtaccatcac cacaacctcg acctaatcat attaactggg 2340 gatcctatgc agagtgccta tcatgaaact aatagggatg cctatatctc tttaatacct 2400 gatgcctctg ccatttttag tgagtactgc gagttcaaca ttaacgccac ccaccgtaat 2460 gtggctgaac tcgcttgcct ccttggtgtc tactccgaac gccaaggcaa actcactgtt 2520 tcctttagcg cagccccact ttctaaaggt aaagtaccca ttctggtacc ctccagaatg 2580 aagcaagagg ctttcgctga tgtcggcaac cgttgcatga cttatgccgg ttgccagggt 2640 ctcactgccc ctaaaatcca aattttgata gacaaccaca ctacgttctg ctctgaacaa 2700 accttatata cttgtctatc acgagctgtg gaccaaatcc actttattaa cactggtccc 2760 aactcgcagg ctttctggac taagttggaa tcaacgccgt acctaaaagc tttcctcgat 2820 aattaccgtg aggaacaaac tgaacggcta acgtctactg ccccagagcc tgaagtccgt 2880 gagccagcag ccccaaaaac gcatatcccg gtcgaaaata catctggctt acgtattgct 2940 gcacttgacc tgccggaaaa gcactctcgc gagattttca acaaggcgca tggcttttcc 3000 aatgctattc agggagatgg cgtagctccc atgttccagc atcaacaggc aaaggacgaa 3060 acccttttca aggctaccat agacgctaga ctctctataa cacatcctga tgaaaataaa 3120 agagagtttg ccatgaagaa agacactggg gatgtccttt ttgtcaatta caaagctata 3180 atgaacctac ctcatgagcc tgttcctttt gaacctcgtc tctggaacat ccgcaaagct 3240 gaagtgcaga atacatacct agccaaaccc attgcaaatc ttatcaatgg taccttaagg 3300 caatcacctg attttccagc caataagata gcattattcc tgaaatcgca atgggtaaag 3360 aaaattgaga aaattggagc cataccagtt aaacctggac agactattgc atcatttatg 3420 caagagactg ttatgctgta cggcaccatg gcacgctacc tccgtaagat gcggcaaaga 3480 tatcaacccg cacacatatt tatcaattgt gaaaagactc cggaggactt caataaattt 3540 atacttgaac actggtcaca caagcaagtt gcccacacta acgattttac cgctttcgac 3600 cagtcacaag atgctgccat gctccaattt gaagttatca aggctaggta cttcaacatc 3660 cctgaggacg ttatagaagg atacattcaa attaagctca ctgctgaaat cttcctcggg 3720 acactttcca tcatgcgctt atctggtgaa gggccaacct tcgacgccaa tactgaatgc 3780 tctattgcct acaacgccac cagataccat attaatgaag acgtcaccca agtatacgcc 3840 ggtgacgaca tggctatgga ccatgtgtgc cctgagaaga gcttcaaagc tttggaaaag 3900 aaactgaaat tgacctcaaa acctctctat ccaaagcaaa aacctggaga ctgggccgat 3960 ttctgcggct ggactataac gccttatggc atcattaaga atcctaagaa acttgatgca 4020 tgcctacaat tgcacaccca actgggcgat gcccatgaag tcgctagatc atacgcactc 4080 gatgccaaat atgcttatga tctgggcgat cgcattcatg aggttctgaa tgttgatgaa 4140 atgaccagcc acttcaatgt tataagacag ttgcacaaac tgcatcaaca agatgtactg 4200 gtcccacccg agcataccgt agccacagcg gtaaagtctc aacctgatgt ggaggatctg 4260 tggctccgtg cgcttagctt ccctgactgg acggaccgcg cccaactttt aaaacgggtt 4320 taaattttga tggagctagc gtacttagtt agattactag aacacaataa attcgagcgc 4380 actaatctgc ccctttcctc acccttagtt gtacacggaa tcgctggcag tggaaagtcc 4440 accatcctca ctactttcca tcaccattac ccggctcacc ccatcttctc acacagtccc 4500 acattgcttg accctagcaa ccgcatatac caacagtgca tcactactga ttcggtgcca 4560 gacggtgcta tcgtagacga gtacaattat aaagcactcg actactctcg ctgtctagcc 4620 ctttttggtg atccactcca gcttccacat tcacttcaac cccactacta ctctagtcgc 4680 acttaccgct acggtcccaa gctcaccagt ctactcaacg acttattcca cctttccatc 4740 acttctcttg ctcccgtcga cagccttgat tacgctgatc cttttgttgt cgacccctca 4800 ggattcacca ttgctgacga ggaagtgtac aactttgtct ctcagcaggt tcccggcact 4860 ttactgccgc tcgatactgt aggtttagaa tattctagtg ttagttttta ctgcagtgat 4920 ctccgacgct gtgtcgtact aaggccactc agcacattca tcgctctcac ccgcgccaag 4980 ggcaacctca ccattttcga cttcaatgcc aggtttagtt ccaccacctg accactctaa 5040 atcactcttc gtccttgcta ttggtataac tgtggtctcc gcattatttg tgctaaaatc 5100 ccacactttt ccaattgcag gcgataatat tcaccgcttc ccctccggcg gccaatacaa 5160 agacggtact aagcaaataa actactgccc acctactcat gctaggtacc cgaaataccc 5220 tgactacaag tggcttgccg ctaccgccgc cattgtcatc cctctctgcc tatatatttc 5280 ctaccatcct ggcaataata ttcgccgtat ttgcccttgt tgcaatacat atcaccactc 5340 ctgagccctt ctgtaccata cacatagacg gggcgtctat tactatcact aactgccctg 5400 atcctgcagc tatattaaat aaagtagcca taggcccctg gcgagggtta agttaccaca 5460 ataatttgaa atgatcatgg gagagcccac tccaactcca gctgccactt actccgctgc 5520 cgaccccact tctgcaccca agttggctga cctggctgcc atcaagtact cacctgtcac 5580 ctcctccatt gccacccccg aagaaatcaa ggccataacc caattgtggg ttaacaacct 5640 tggcctcccc gccgacacag taggtactgc ggccattgac ctggctcgcg cctacgctga 5700 cgtcggggcg tccaagagtg ctaccctgct tggtttctgc cctacgaaac ctgatgtccg 5760 tcgcgccgct cttgccgcgc agatcttcgt ggccaacgtc accccccgcc agttttgcgc 5820 ttactacgca aaagtggtgt ggaacctgat gctggctact aacgatccgc ctgccaactg 5880 ggccaaggct ggtttccagg aggatacccg gtttgctgca tttgacttct tcgatgcagt 5940 cgattccact gccgcgttgg agcctgctga atggcagcgc cgccctaccg accgtgaacg 6000 tgctgcgcac tcagtcggga agtacggcgc ccttgcccgt cagcgtatcc aaaacggcaa 6060 cctcatcacc aacattgccg aggtcactaa gggccatctt ggctccacca acactctcta 6120 tgctctgcct gcacccccta ctgaataacg ccaaacttaa taaggcgtgt ggttttctaa 6180 agtttgtttc cactactggc ataatacgtt tagccagatc taat 6224 //