ID HQ680399; SV 1; linear; genomic RNA; STD; VRL; 4108 BP. XX AC HQ680399; XX DT 10-MAY-2011 (Rel. 108, Created) DT 17-APR-2014 (Rel. 120, Last updated, Version 2) XX DE Velvet tobacco mottle virus isolate R17, partial genome. XX KW . XX OS Velvet tobacco mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4108 RX DOI; 10.1007/s11262-013-1007-y. RX PUBMED; 24233651. RA Arthur K., Collins N., Yazarlou A., Randles J.; RT "Nucleotide sequence diversity in Velvet tobacco mottle virus: a virus with RT a unique Australian pathosystem"; RL Virus Genes 48(1):168-173(2014). XX RN [2] RP 1-4108 RA Arthur K.R., Randles J.W.; RT ; RL Submitted (02-DEC-2010) to the INSDC. RL School of Agriculture, Food and Wine, University of Adelaide, Waite Rd, RL Adelaide, SA 5064, Australia XX DR MD5; cefbfd3975dadb4e57813e474c6eeff8. DR EuropePMC; PMC3791421; 23830075. XX FH Key Location/Qualifiers FH FT source 1..4108 FT /organism="Velvet tobacco mottle virus" FT /host="Nicotiana clevelandii" FT /isolate="R17" FT /mol_type="genomic RNA" FT /country="Australia" FT /collection_date="1979" FT /db_xref="taxon:12473" FT 5'UTR <1..45 FT CDS 46..504 FT /codon_start=1 FT /product="P1" FT /db_xref="UniProtKB/TrEMBL:E2IZN0" FT /protein_id="AEE36647.1" FT /translation="MPSIDVEVEKILHLSNRKRLRSVCVARKKTFVDKISEGFVCTLYG FT EYDHDYVTSVHLHIVCSCGRAFFDFVEFKDIKLRDFQYQSQCICPTRNWSTVAYTDFTT FT VNCQVEGCDYCEGIESDSDSDSEAIIEEFLQKFSEVGISGSSSSPQTN" FT CDS 561..2279 FT /codon_start=1 FT /product="P2a" FT /note="polyprotein containing serine protease and VpG" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:F5B9B6" FT /protein_id="AEE36644.1" FT /translation="MLSELVQLCLSATMTLALVVSMMLDPSYGWLITMSVMLVSLELTI FT RPFRRSLDYMKIVVRDEPNEPEVARIVGAPTYHPIHGVVCKCLWNSKEFNVVVQPSLWP FT LAFPPNISQGVVKEGAMIGVPFTSLPSGAEPKSLVVLYNDGVRIGMGSRVNWQGADYLL FT TASHVWSLVTGDFQMAKASKMVSVKDAKCYVEAAHAKLDFALIKVPNKYWSSIGVGSAK FT LLWHKPGQVVKVYGGRSDELVSSVGRAEKDPDLSLRLTHNASTAPGWSGSPLYNSENFV FT VGLHTGFSAAEQRNEAVDVAKLLHLALRTKETTFSEIGVSLIDEDEIESRGYQFDDFEL FT RGEVNVKGKMARNEISLIASKNKGKPWYLQEEGDDEFYDSIGEKDFLARFREQTGKETV FT GNLNCQRAAQTLEPPFENLRPCDGKNPELFKPAGWDSTMLESRLASLERALSTLLAEQS FT VLLSKFSQNSNSMVGQKEALKPSSIPSSSKPAVSGEPPVQSKPSVNAKSSLRSTPKVEP FT TVASGEKTSVNASSSGNKSKRRRRRRKSTTKPAPAPPGQDLKRPMVSSSPVSKTS" FT misc_feature 1763..1769 FT /note="-1 frameshift signal" FT CDS 1859..3505 FT /codon_start=1 FT /product="RNA dependent RNA polymerase" FT /note="P2b" FT /db_xref="GOA:F5B9B7" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:F5B9B7" FT /protein_id="AEE36645.1" FT /translation="MGFNYVGVSSCKFREGSKHAARGAISSAEQVFPELKQYGWPERGS FT KAEFDSLLLQASRFRRTSCPEQTERKCEVLAEKYPKSRAHRCFRRENFCQRQLLREQIE FT ATTTSPEINDKASPGSPWSRLEKTNGELISRFKDLLIEAVLRRVLLLASTPTSEILCMS FT ASDLVRANLVDPVRLFVKQEPHTKKKLNERRFRLISSVSIVDQIIERLLFGPQNRLEIA FT LWHQIPSKPGMGLSARTQADLLWNELFAKSEIAPAAEADISGFDWSVQEWELWADLSMR FT ISLCEDMHDGLRRLMVNRYRCFMLSCFQLSNGELYEQVEPGLMKSGSYCTSSSNSRIRC FT LMGYLIGAPWIIAMGDDSVEGYVRDAKGKYEELGHTCKEYELCDVDSDGALRSVNFCSH FT LISRNKFWLTSWPKTLYRFLDSPSENFHDLERELGSCPKWAKIKDYCCQVGLVPDKTYW FT EEDHPADYVEETHQEPGQADDTGNLAERADFCSVPTTETPKVDAARAEFYSYGPNGWSC FT DIPEATHVNQWPLWGYSSSFGGGFGSPIRDY" FT misc_feature 3219..3224 FT /note="ACAAAA motif" FT CDS 3255..4100 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:E2IZN3" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E2IZN3" FT /protein_id="AEE36646.1" FT /translation="MSKKLTKNQVKQMIQATLPKEQTSARSRRRRRRRSTQQGQSSTVM FT APMAGAVIYRKRPMLINGRSGVTVRHSEVVLVVQSGTTNFSATSVTLAPNTFTWLAVQG FT SLYSKWRWISLRATYVPETASTTPGTVAMGFQYDNTDVLPTGTAGMSSLHGFVSGAPWS FT GFSGSKLLAESPTTPIPAGAIATRLDCQNFGLKWYQYKSVIPAGDSGNIYIPAQLIVGT FT LGTGSTLRYGEVHIQYEIEFIEPLPPSVNTLRDIYSRMILSSASDERKGEKSSQTLTDR FT " FT 3'UTR 4101..>4108 XX SQ Sequence 4108 BP; 1043 A; 913 C; 1058 G; 1094 T; 0 other; atattgaagg gaaagtcttg cactcagtac ccattatatt ttgatatgcc cagcattgat 60 gttgaagtag aaaagatcct gcacttgagc aacagaaaga gactaaggtc tgtctgtgtg 120 gcgaggaaga agacgttcgt agacaagata tccgaaggat ttgtctgcac tctttacgga 180 gagtacgatc acgactacgt caccagtgtg catttgcaca ttgtttgctc gtgcggtaga 240 gctttctttg attttgttga gttcaaggac ataaaactcc gagatttcca atatcaaagt 300 cagtgtatct gtcccaccag gaattggtcg acggtcgctt acactgattt tactaccgtc 360 aactgccaag tggaaggttg tgattactgt gaggggattg agtcagactc tgattcggat 420 tctgaggcca tcatagagga atttcttcaa aagttttccg aggttggcat ctctggatcg 480 tccagttctc cccagactaa ctaggactcg gttccgttta ttttcttaca aatcatttaa 540 ttgttttgta attgagaaag atgttgagcg agttagtcca gttgtgtctt tcagcaacca 600 tgactctagc gctggtagtg tcaatgatgc tggacccgag ctacgggtgg ctgatcacca 660 tgtctgtgat gttagtctcc ttagagctga caatcaggcc gttcaggcgc tctctagact 720 acatgaaaat tgtggtccga gatgagccca atgagcctga agttgctagg atagtaggcg 780 cgccaactta ccacccaatt catggcgttg tttgcaagtg tctgtggaac tcgaaagagt 840 ttaatgtggt tgtgcaaccc agtttgtggc ctctagcctt tcccccaaac atatcacaag 900 gggtagtaaa ggaaggagct atgataggtg taccattcac atccctaccc tctggagctg 960 aaccaaagtc tctcgttgtc ttatacaacg atggagtcag aatcggtatg ggctctagag 1020 ttaattggca aggcgcagat tacttgttga cagcctccca cgtttggtcc ctcgtaactg 1080 gtgattttca aatggcaaaa gccagtaaga tggtctcagt gaaggacgcc aagtgttatg 1140 ttgaggctgc tcacgctaag ctggactttg ccctaattaa agttccgaac aaatattgga 1200 gctcgatagg ggttggttcg gctaaattgt tgtggcataa gcccgggcaa gtggtcaagg 1260 tttacggagg tagatctgat gaattggtct cttctgtggg ccgagccgaa aaggatcctg 1320 atctgagcct acgtctgacc cataacgctt caactgctcc aggatggagc ggctccccgc 1380 tttacaactc tgaaaatttc gtagtgggat tgcatactgg cttttccgcg gctgagcaga 1440 gaaatgaggc ggttgatgta gcgaagttgc tgcacctcgc ccttagaaca aaggaaacga 1500 cgttttcgga gatcggtgtc tctcttatcg atgaagatga gattgagtct cgcggttacc 1560 aattcgacga ctttgagctt aggggtgagg taaacgttaa agggaaaatg gcgcggaatg 1620 agatatctct catcgcctct aagaataaag ggaaaccttg gtatcttcaa gaggaaggtg 1680 atgatgaatt ctatgactcg atcggtgaga aagatttcct tgcccgcttc cgtgaacaaa 1740 ctggtaaaga gacagtgggg aatttaaact gccagagggc ggcccaaaca ttggagccgc 1800 ccttcgagaa cttgaggccg tgcgatggga agaacccaga gctattcaaa ccggcgggat 1860 gggattcaac tatgttggag tctcgtcttg caagtttaga gagggctcta agcacgctgc 1920 tcgcggagca atcagttctg ctgagcaagt tttcccagaa ctcaaacagt atggttggcc 1980 agaaagaggc tctaaagccg agttcgattc cctcctcctc caagccagcc gtttccggag 2040 aacctcctgt ccagagcaaa ccgagcgtaa atgcgaagtc ctcgctgaga agtaccccaa 2100 aagtagagcc caccgttgct tcaggagaga aaacttctgt caacgccagc tcctcaggga 2160 acaaatcgaa gcgacgacga cgtcgccgga aatcaacgac aaagccagcc ccggctcccc 2220 ctggtcaaga cttgaaaaga ccaatggtga gctcatctcc cgtttcaaag acctcttaat 2280 tgaggcagtg ttgaggcgag ttttattgct tgcctccact ccaaccagtg agattttatg 2340 catgtctgct tcagatctcg ttagagctaa cttagtggat cctgtgcgat tgttcgtcaa 2400 gcaggaaccc catacgaaga agaagctgaa tgagcgtcgc tttaggctta tttcgtctgt 2460 gtctatagtt gatcagataa tcgagagatt attgtttggt cctcagaaca ggcttgagat 2520 agccttatgg catcagatac cttccaaacc tggaatggga ctgagcgctc gtacgcaagc 2580 tgatttgttg tggaatgagt tattcgcaaa gagcgagatt gcccctgcgg ccgaggctga 2640 catttcagga tttgactggt ctgtgcagga atgggagtta tgggccgatc tgagcatgag 2700 gatttctttg tgcgaagata tgcatgatgg tctacggagg ttgatggtta acagataccg 2760 ctgctttatg ctctcttgct tccaattgtc gaatggggaa ttgtatgaac aagttgagcc 2820 tggactcatg aagtctggtt cctactgcac ttcctcttcc aactccagaa tcaggtgcct 2880 aatgggctat ctaattggag ccccctggat aatagccatg ggggatgatt ctgttgaggg 2940 ttatgtgaga gacgcgaaag gcaagtatga ggaattagga cacacttgta aggaatacga 3000 gttgtgtgat gttgattcag acggcgcgtt gagatctgtg aacttttgtt cacatttgat 3060 ttcccgcaac aagttttggc tcacaagctg gcctaaaacc ttgtacaggt tcctagactc 3120 tccctctgaa aattttcatg atcttgaaag ggaacttggc tcatgtccca agtgggccaa 3180 gataaaggat tattgttgtc aggtaggact ggtccctgac aaaacatatt gggaagaaga 3240 tcaccctgct gactatgtcg aagaaactca ccaagaacca ggtcaagcag atgatacagg 3300 caaccttgcc gaaagagcag acttctgctc ggtcccgacg acggagacgc cgaaggtcga 3360 cgcagcaagg gcagagttct acagttatgg ccccaatggc tggagctgtg atataccgga 3420 agcgacccat gttaatcaat ggccgctctg gggttacagt tcgtcattcg gaggtggttt 3480 tggtagtcca atccgggact actaacttct cggccacttc tgttactctc gcgcctaaca 3540 ctttcacctg gttagctgta caaggatccc tctattctaa atggaggtgg atatcgctta 3600 gagccacgta tgtgcccgaa accgcttcta cgactcccgg aactgtggca atgggtttcc 3660 agtatgacaa tactgatgtc ctacccactg gaaccgctgg tatgtctagt ttgcatggtt 3720 ttgtgtcagg cgctccgtgg tcaggcttta gtggttctaa actcctcgct gaaagtccca 3780 ccactcccat ccctgctgga gcaatcgcaa ctcgacttga ctgtcaaaat ttcggtctca 3840 aatggtatca gtacaagtct gttatacctg ctggtgattc tggaaacatc tatattccag 3900 ctcagttgat tgtcggtacc ctggggactg gttcaacttt gagatatggt gaagtgcaca 3960 tccagtatga gattgagttt attgagcccc ttcctccttc ggtgaacact ctcagagata 4020 tttactctag gatgatccta agttcggcgt cagatgaaag gaaaggtgag aagtctagtc 4080 agactttaac tgaccgctag gcaagcga 4108 //