ID   HQ680386; SV 1; linear; genomic RNA; STD; VRL; 1647 BP.
XX
AC   HQ680386;
XX
DT   10-MAY-2011 (Rel. 108, Created)
DT   17-APR-2014 (Rel. 120, Last updated, Version 2)
XX
DE   Velvet tobacco mottle virus isolate Yaninguire RNA dependent RNA polymerase
DE   gene, complete cds.
XX
KW   .
XX
OS   Velvet tobacco mottle virus
OC   Viruses; Riboviria; Solemoviridae; Sobemovirus.
XX
RN   [1]
RP   1-1647
RX   DOI; 10.1007/s11262-013-1007-y.
RX   PUBMED; 24233651.
RA   Arthur K., Collins N., Yazarlou A., Randles J.;
RT   "Nucleotide sequence diversity in Velvet tobacco mottle virus: a virus with
RT   a unique Australian pathosystem";
RL   Virus Genes 48(1):168-173(2014).
XX
RN   [2]
RP   1-1647
RA   Arthur K.R., Randles J.W.;
RT   ;
RL   Submitted (02-DEC-2010) to the INSDC.
RL   School of Agriculture, Food and Wine, University of Adelaide, Waite Rd,
RL   Adelaide, SA 5064, Australia
XX
DR   MD5; 20871cc5be1ceb98b08ffacc3f3128ac.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1647
FT                   /organism="Velvet tobacco mottle virus"
FT                   /host="Nicotiana clevelandii"
FT                   /isolate="Yaninguire"
FT                   /mol_type="genomic RNA"
FT                   /country="Australia:Yaningurie water hole"
FT                   /collected_by="John Randles"
FT                   /collection_date="24-Nov-2000"
FT                   /db_xref="taxon:12473"
FT   CDS             1..1647
FT                   /codon_start=1
FT                   /product="RNA dependent RNA polymerase"
FT                   /note="P2b; RdRp"
FT                   /db_xref="GOA:F5B9A4"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:F5B9A4"
FT                   /protein_id="AEE36650.1"
FT                   /translation="MGFNYVGVSSCKFREGSKHAARGAIGSAEQVFPELKQYGWPERGS
FT                   KAEFDSLLLQASRFRRTSCPEQTERKCEVLAEKYPKSRAHRCFRRENFCHRQLLREQIE
FT                   ATTTSPEINDKASPGSPWSRLEKTNGELISRFKDLLIEAVLRRVLLLASTPTSEILCMS
FT                   ASDPVRANLVDPVRLFVKQEPHTKKKLNERRFRLISSVSIVDQIIERLLFGPQNRLEIA
FT                   LWHQIPSKPGMGLSARTQADLLWNELFAKSEIAPAAEADISGFDWSVQEWELWADLSMR
FT                   ISLCEDMHDGLRRLMVNRIPCFMLSCFQLSNGELYEQVEPGLMKSGSYCTSSSNSRIRC
FT                   LMGHLIGAPWIIAMGDDSVEGYVRDAKSKYEELGHTCKEYELCDVDSDGVLRSVNFCSH
FT                   LISRNKFWLTSWPKTLYRFLDSPSENFHDLERELGSCPKWAKIKDYCCQVGLVPDKTYW
FT                   EEDHPADYVEETHQEPSQADDTGNLAERADFCSVPTTETSKVDAARAEFYSYGPNGWSC
FT                   DIPEATYANQWPLWGYSSSFGGGFGSPIRDY"
XX
SQ   Sequence 1647 BP; 426 A; 371 C; 428 G; 422 T; 0 other;
     atgggattca actatgttgg agtctcgtct tgcaagttta gagagggctc taagcacgct        60
     gctcgcggag caatcggttc tgctgagcaa gttttcccag aactcaagca gtatggttgg       120
     ccagaaagag gctctaaagc cgaattcgat tccctcctcc tccaagccag tcgcttccgg       180
     agaacctcct gtccagagca aaccgagcgt aaatgcgaag tcctcgccga gaagtacccc       240
     aaaagtagag cccaccgttg tttcaggaga gaaaacttct gtcaccgcca gctcctcagg       300
     gaacaaatcg aagcgacgac gacgtcgccg gaaatcaacg acaaagccag ccccggctcc       360
     ccctggtcaa gacttgaaaa gaccaatggt gagctcatct cccgtttcaa agacctctta       420
     attgaggcag tgttgaggcg agttttactg cttgcctcca ctccaaccag tgagattttg       480
     tgcatgtctg cctcagatcc cgttagagct aacttggtag atcctgtgcg attgtttgtc       540
     aaacaggaac cccacacaaa gaagaagctg aatgagcgcc gctttaggct tatttcgtct       600
     gtgtctatag ttgatcagat aatcgagaga ttattgtttg gtcctcagaa caggcttgag       660
     attgctttat ggcaccagat accttccaaa ccaggaatgg gactgagcgc tcgtacgcaa       720
     gctgatttgt tgtggaatga gttattcgca aagagtgaga ttgcccctgc ggccgaggct       780
     gatatttcag gatttgactg gtctgtgcag gaatgggagt tatgggccga tctaagcatg       840
     aggatttctt tgtgcgaaga tatgcatgat ggtctgcgga ggttgatggt caacagaata       900
     ccgtgcttta tgctctcttg cttccaattg tcgaatgggg aattgtatga acaagttgag       960
     cctggactta tgaagtctgg ttcctactgc acttcctctt ccaactccag aatcaggtgc      1020
     ctaatgggcc atctaattgg agctccctgg ataatagcca tgggggatga ttctgttgag      1080
     ggttatgtga gagacgcgaa aagtaagtat gaggaattag gacacacttg taaggaatac      1140
     gagttgtgtg atgttgattc agatggcgtg ttgagatctg tgaacttttg ttcacatttg      1200
     atttcccgca ataagttttg gctcacaagt tggcctaaaa ccttgtacag gttcctagac      1260
     tctccctctg aaaattttca tgatcttgaa agggaacttg gctcatgtcc caagtgggct      1320
     aagataaagg attattgttg tcaggtagga ctggtccctg acaaaacata ttgggaagaa      1380
     gatcaccctg ctgactatgt cgaagaaact caccaagaac caagtcaagc agacgataca      1440
     ggcaaccttg ccgaaagagc agacttctgc tcggtcccga cgacggagac gtcgaaggtc      1500
     gacgcagcaa gggcagagtt ctacagttat ggccccaatg gctggagctg tgatataccg      1560
     gaagcgacct atgctaatca atggccgctc tggggttaca gttcgtcatt cggaggtggt      1620
     tttggtagtc caatccggga ctactaa                                          1647
//