ID HQ677625; SV 1; linear; genomic RNA; STD; VRL; 3956 BP. XX AC HQ677625; XX DT 16-JAN-2011 (Rel. 107, Created) DT 14-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Honeysuckle ringspot virus isolate California, complete genome. XX KW . XX OS Honeysuckle ringspot virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Alphacarmovirus. XX RN [1] RP 1-3956 RX DOI; 10.1007/s00705-011-1009-9. RX PUBMED; 21562880. RA Gulati-Sakhuja A., Rains L., Tian T., Liu H.Y.; RT "The complete nucleotide sequence and genome organization of a novel RT carmovirus - honeysuckle ringspot virus isolated from honeysuckle"; RL Arch. Virol. 156(9):1635-1640(2011). XX RN [2] RP 1-3956 RA Gulati-Sakhuja A., Sears J., Rains L., Tian T., Liu H.-Y.; RT ; RL Submitted (03-DEC-2010) to the INSDC. RL Virology, USDA-ARS, 1636 E Alisal Street, Salinas, CA 93905, USA XX DR MD5; d77e387b9fd985d6bfec5ec4d3589221. XX FH Key Location/Qualifiers FH FT source 1..3956 FT /organism="Honeysuckle ringspot virus" FT /host="honeysuckle" FT /isolate="California" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:943272" FT gene 34..2676 FT /gene="P101" FT CDS 34..2676 FT /codon_start=1 FT /transl_except=(pos:766..768,aa:OTHER) FT /transl_except=(pos:2326..2328,aa:OTHER) FT /gene="P101" FT /product="p101" FT /note="double read-through protein" FT /db_xref="GOA:E7EEK3" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:E7EEK3" FT /protein_id="ADV15469.1" FT /translation="MLLDFCFKAIIAPPIVGTVVAMGLAGLTVRTTIGVVEFEARAVRT FT VVDYITSKGKTLPGKPKYPKAKVNVFLEELAEVDGDDRELPDLLETVEVKKEDGEGKMV FT VVRTKAKVNRHTRGRFVHRLVCATKNHLGGTPNNSTANKLVAYKFMVGKCKEQHLVETH FT TREVCSLAMAAIFTPDVHDVNMHLALNSHAAYRRRVALAQAQEVQSWQLRLLKHPLKYD FT SWERAWLWANGAPTQEPFRFIKXGGLCYFEGVDTKIRRGSHPLMIEVEKDGPHKLRKLY FT AQNVMSSGLDYRVHNHSFQNLRRGLLERVFYVESKDKKELVDCPQPNQAAFKELAYLRK FT QFARYAGIHTRISTQDMVDCYHGRKKSIYQNAADSLSDRPLDRKDAALKTFIKAEKFCI FT NLKPDPAPRVIQPRSVRYNVELGRYLKKYEHSAYRALDKIWGGTTVMKGYTVEQVGEHI FT ASAWGEFQIPVAVGFDMSRFDQHVSVPALQFEHSCYMKSFKHDRELQQLLSWQLTNFGV FT AFADDGMIRYKKAGCRMSGDMNTALGNCLLACMITKHLMRDLKCRLVNNGDDCVLFCES FT RDLGSVVSNLTTGWREFGFNCIAEEPVYILEEVRFCQMAPVFDGESYVMVRDPRVSISK FT DAFSLVHWNNSKNALQWMKSVGLCGERITGGIPVVQEFYRKYQQIAGDVRLPKLNVDIE FT SSGVYMLANKMKRAFKEPTDEARFSFYLAFGIIPDLQIAVEKSIRDIPEDVEFGPCDKL FT ADYTLKWTFNQXKQKMTLAFKVTWREVATGERRREEYQSQKMLSTNGHLMVLSGVLIIF FT LLIKWKIPLTLISVEVDYKPPVILLFIIFITLQLIYQYTTALLAEKVVYNTTEANNTRV FT QYISIKQKQ" FT gene 34..2328 FT /gene="P87" FT CDS 34..2328 FT /codon_start=1 FT /transl_except=(pos:766..768,aa:OTHER) FT /gene="P87" FT /product="p87" FT /note="RNA-dependent RNA polymerase; readthrough protein" FT /db_xref="GOA:E7EEK4" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:E7EEK4" FT /protein_id="ADV15468.1" FT /translation="MLLDFCFKAIIAPPIVGTVVAMGLAGLTVRTTIGVVEFEARAVRT FT VVDYITSKGKTLPGKPKYPKAKVNVFLEELAEVDGDDRELPDLLETVEVKKEDGEGKMV FT VVRTKAKVNRHTRGRFVHRLVCATKNHLGGTPNNSTANKLVAYKFMVGKCKEQHLVETH FT TREVCSLAMAAIFTPDVHDVNMHLALNSHAAYRRRVALAQAQEVQSWQLRLLKHPLKYD FT SWERAWLWANGAPTQEPFRFIKXGGLCYFEGVDTKIRRGSHPLMIEVEKDGPHKLRKLY FT AQNVMSSGLDYRVHNHSFQNLRRGLLERVFYVESKDKKELVDCPQPNQAAFKELAYLRK FT QFARYAGIHTRISTQDMVDCYHGRKKSIYQNAADSLSDRPLDRKDAALKTFIKAEKFCI FT NLKPDPAPRVIQPRSVRYNVELGRYLKKYEHSAYRALDKIWGGTTVMKGYTVEQVGEHI FT ASAWGEFQIPVAVGFDMSRFDQHVSVPALQFEHSCYMKSFKHDRELQQLLSWQLTNFGV FT AFADDGMIRYKKAGCRMSGDMNTALGNCLLACMITKHLMRDLKCRLVNNGDDCVLFCES FT RDLGSVVSNLTTGWREFGFNCIAEEPVYILEEVRFCQMAPVFDGESYVMVRDPRVSISK FT DAFSLVHWNNSKNALQWMKSVGLCGERITGGIPVVQEFYRKYQQIAGDVRLPKLNVDIE FT SSGVYMLANKMKRAFKEPTDEARFSFYLAFGIIPDLQIAVEKSIRDIPEDVEFGPCDKL FT ADYTLKWTFNQ" FT gene 34..768 FT /gene="P27" FT CDS 34..768 FT /codon_start=1 FT /gene="P27" FT /product="p27" FT /note="replication-related protein" FT /db_xref="UniProtKB/TrEMBL:E7EEK5" FT /protein_id="ADV15467.1" FT /translation="MLLDFCFKAIIAPPIVGTVVAMGLAGLTVRTTIGVVEFEARAVRT FT VVDYITSKGKTLPGKPKYPKAKVNVFLEELAEVDGDDRELPDLLETVEVKKEDGEGKMV FT VVRTKAKVNRHTRGRFVHRLVCATKNHLGGTPNNSTANKLVAYKFMVGKCKEQHLVETH FT TREVCSLAMAAIFTPDVHDVNMHLALNSHAAYRRRVALAQAQEVQSWQLRLLKHPLKYD FT SWERAWLWANGAPTQEPFRFIK" FT gene 2310..2513 FT /gene="P7" FT CDS 2310..2513 FT /codon_start=1 FT /gene="P7" FT /product="p7" FT /db_xref="GOA:E7EEK6" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:E7EEK6" FT /protein_id="ADV15470.1" FT /translation="MDVQPVEAKDDTRIQSDVERGGNRGKTKGRISIAKDAINKRASDG FT SIGGTYYIFADKVENTVNFNFG" FT gene 2338..2676 FT /gene="P13" FT CDS 2338..2676 FT /codon_start=1 FT /gene="P13" FT /product="p13" FT /db_xref="GOA:E7EEK7" FT /db_xref="UniProtKB/TrEMBL:E7EEK7" FT /protein_id="ADV15471.1" FT /translation="MTLAFKVTWREVATGERRREEYQSQKMLSTNGHLMVLSGVLIIFL FT LIKWKIPLTLISVEVDYKPPVILLFIIFITLQLIYQYTTALLAEKVVYNTTEANNTRVQ FT YISIKQKQ" FT gene 2676..3710 FT /gene="P37" FT CDS 2676..3710 FT /codon_start=1 FT /gene="P37" FT /product="p37" FT /note="coat protein" FT /db_xref="GOA:E7EEK8" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR013669" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E7EEK8" FT /protein_id="ADV15472.1" FT /translation="MDTLRNSKKVAQLSASGVLWATKYMTRGWQSLSTNQKRLARAALN FT LPLTPQVISPVRPRVRNPQPRGAANGLGQAGKTQTITRSEYVADVVKTVGATPTFTTWV FT INPRSVRSFPGTSVCSLGYEKYRVVNFRVRYSNSLSDDVSGKVSIGFTPDSSDPIPTNK FT TQLYQMRVSMDTAAKESKTLTIPTDNATRYLRDSSIDDAKVVDFGRVVLATYGFDQSAP FT EVIGEIHFEYTLVLSDPNFVTTLTQKGTNSEYEGPLYGALERTNSAITLTLQAPGNWLV FT VWISPEAFNSPTVTGSGASGTVSYQSGGSSMAVTTVIANLPGAQVTAPTTTAVKELQWY FT VSRL" XX SQ Sequence 3956 BP; 1102 A; 855 C; 1071 G; 928 T; 0 other; ggggttttcc ggttggggcc cagttcactg acgatgcttc ttgacttctg tttcaaagcc 60 atcattgctc cccccattgt ggggaccgtg gttgctatgg gtctggcagg actcacagtg 120 agaacaacaa tcggtgtggt tgaattcgag gcacgggcag ttaggaccgt cgtcgattac 180 atcaccagca aagggaaaac attaccaggg aagccgaaat acccgaaggc taaggttaat 240 gtcttcctcg aagagctggc agaggtggac ggtgatgatc gtgagctgcc cgatctcctc 300 gaaacggtcg aggttaagaa ggaggatggc gaagggaaaa tggtcgttgt gcgaacaaag 360 gccaaggtta accgccatac cagaggtagg tttgtgcata ggctagtttg cgcaaccaag 420 aaccatctgg gggggacgcc gaataacagt acggccaaca agctggtggc gtacaaattc 480 atggtgggga aatgcaagga gcaacacctt gtagagaccc acaccaggga ggtgtgctcg 540 ctggctatgg ccgccatatt tacccccgac gtgcatgatg tcaacatgca cctcgcactt 600 aacagtcacg ccgcctacag acggcgcgta gccttggctc aagcgcaaga ggtgcagagc 660 tggcaactaa ggctactaaa acaccctctc aaatatgata gttgggagag ggcgtggtta 720 tgggccaatg gcgctccaac ccaggagccc tttaggttca taaaataggg gggtctttgc 780 tacttcgagg gtgtggatac aaaaattcgt aggggatcac accctctgat gatcgaagta 840 gaaaaagatg gtccccacaa acttaggaaa ctctacgcgc aaaatgtgat gagcagcgga 900 cttgactacc gtgttcacaa tcattcattc caaaaccttc gaagaggtct cctcgaaaga 960 gttttctacg tggaaagtaa agataagaag gagttagtcg attgccccca acccaaccag 1020 gctgctttca aggagttggc ttacttgagg aagcaatttg ctagatacgc tggaattcat 1080 accaggatct ccacccaaga tatggtggat tgttatcatg gcaggaagaa aagcatctat 1140 caaaacgcag ctgatagttt gtctgaccgg cccctggacc ggaaggatgc tgcactcaaa 1200 acattcatta aagctgaaaa attctgtatt aatctgaaac ccgacccagc tcccagagtt 1260 atacaacctc gaagcgtgcg ttacaatgtg gaattaggta gatacctaaa gaaatatgaa 1320 cattccgctt accgagcgct agataaaatc tgggggggga ctacagtgat gaagggatac 1380 acggtagaac aggtgggaga gcatatagcc tctgcgtggg gagaattcca gattcccgtt 1440 gcagttggat ttgacatgag cagattcgac caacatgttt ctgtgcctgc gctccagttc 1500 gaacactcct gttacatgaa atccttcaaa catgatcgag aacttcaaca gttgttatcc 1560 tggcaattaa caaactttgg agttgcgttc gctgatgatg gtatgatccg ttacaagaag 1620 gccgggtgtc gtatgagtgg tgacatgaat acggcactag gcaattgtct ccttgcctgt 1680 atgattacga agcacctgat gagagacctc aagtgccggc ttgtgaacaa tggggatgac 1740 tgcgtgttgt tttgcgaatc tagggatctc ggctcagtcg tgagcaattt aacgactggt 1800 tggcgggaat ttggattcaa ttgcatcgca gaggaacctg tttacattct ggaggaagtg 1860 aggttttgtc agatggcgcc cgtatttgat ggggagtcat atgtgatggt gagagaccct 1920 cgggtaagca tcagcaagga cgctttttcc ttggtccatt ggaacaacag taaaaatgcc 1980 ctccaatgga tgaagtcggt cggtttgtgt ggagagcgta taacaggggg gattccagtc 2040 gttcaggagt tctaccggaa gtatcaacaa attgctggag acgtgcgctt gccgaagttg 2100 aacgtagata tcgagtctag cggcgtgtat atgttggcta acaaaatgaa aagggccttt 2160 aaagaaccta ccgatgaggc taggtttagt ttctacttgg cctttggtat catcccggat 2220 ttgcaaattg cagtggagaa atccattagg gatataccag aggatgtaga gtttgggccc 2280 tgtgataagt tggcagacta tacactcaaa tggacgttca accagtagaa gcaaaagatg 2340 acactcgcat tcaaagtgac gtggagagag gtggcaacag gggaaagacg aagggaagaa 2400 tatcaatcgc aaaagatgct atcaacaaac gggcatctga tggttctatc gggggtactt 2460 attatatttt tgctgataaa gtggaaaata ccgttaactt taatttcggt tgaagttgac 2520 tataagcccc cggtgatttt gttattcatt atcttcataa ctcttcagtt gatttaccag 2580 tacaccacag cactcttggc agagaaagtt gtctacaata cgacggaagc aaacaacacc 2640 agggttcagt acattagcat taaacagaag caataatgga tactttgagg aacagcaaga 2700 aggtcgcgca actctccgcg agtggagttc tctgggctac aaaatacatg accagaggat 2760 ggcaaagttt gagtaccaac cagaaaaggt tggctagagc tgcgctcaac ttacccttga 2820 ccccacaggt gatctcaccg gtgaggccga gggtaagaaa cccacagccg agaggtgctg 2880 cgaacggatt agggcaagca ggtaagactc agacaatcac gagatcagaa tacgtggcgg 2940 atgttgtcaa aactgtgggt gcaactccca cattcactac ttgggttatt aatcctcgta 3000 gtgttcgtag ctttcctggc accagtgtgt gcagccttgg atacgagaag tatagagtgg 3060 tgaactttcg agttcgctac agtaattcct tgtctgatga cgttagtggg aaggtgtcaa 3120 ttgggttcac tccggactca agtgacccta ttcccactaa taagacgcaa ctctatcaga 3180 tgagagtatc catggacact gctgccaagg agagcaagac gttgacaata ccgacagaca 3240 acgccacgcg ttatctcaga gattcatcca tcgatgatgc caaggtggtg gatttcggaa 3300 gggtcgtgtt agccacatat gggttcgatc agtcagctcc agaggtgatc ggagaaatac 3360 acttcgagta cactctggtg ctttcggacc ccaacttcgt gacgacgcta acacagaaag 3420 gcacaaatag tgaatatgaa ggcccgttat acggcgcatt agagcgaact aattcagcaa 3480 tcacgctaac cctgcaagca ccagggaatt ggctggttgt ttggattagc ccagaggcct 3540 tcaattcacc gaccgtaaca ggatccgggg caagcggaac tgtgagctat caatcaggag 3600 gcagtagtat ggctgtaact actgtcatcg ccaacttgcc aggtgcgcag gtgactgcac 3660 caaccacgac tgccgttaaa gagcttcaat ggtatgtctc aagactatag acgggatgag 3720 cttctggggg ctgccaccct cgcctcatgc gcattgcctg ctctgggcgc atgtggaagc 3780 tgatatagtt gagagcttcg tggaaggatg tggaaaccaa gggagggaga tatccaggga 3840 ggatgtcgga gttgtaagga taaaatacct aagcttcatc aggttaggtt gggcttccga 3900 tgcaacaaaa caccagtaga taaatagggg gggatccagg ggatccttct ccgccc 3956 //