Dbfetch

Dbfetch

ID   HQ671662; SV 1; linear; genomic RNA; STD; VRL; 732 BP.
XX
AC   HQ671662;
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DT   28-MAR-2011 (Rel. 108, Created)
DT   28-MAR-2011 (Rel. 108, Last updated, Version 1)
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DE   Grapevine virus A isolate 3-16-8-9 truncated coat protein (CP) gene,
DE   partial cds; and truncated silencing suppressor (SS) gene, complete cds.
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KW   .
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OS   Grapevine virus A
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus.
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RN   [1]
RP   1-732
RA   Wang J., Xi D., Lin H.;
RT   "Study on the genetic diversity of Chinese Grapevine virus A isolated from
RT   varieties of Vitis vinifera L. x Vitis labrusca L.";
RL   Unpublished.
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RN   [2]
RP   1-732
RA   Wang J., Xi D., Lin H.;
RT   ;
RL   Submitted (02-DEC-2010) to the INSDC.
RL   Life Science College, Sichuan University, Wang Jiang Lu Road No. 19,
RL   Chengdu, Sichuan 610065, China
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DR   MD5; a9f272c2a238f234e49edeb22cb1ac71.
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FH   Key             Location/Qualifiers
FH
FT   source          1..732
FT                   /organism="Grapevine virus A"
FT                   /host="Vitis vinifera x Vitis labrusca"
FT                   /isolate="3-16-8-9"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /isolation_source="bark scrapings"
FT                   /collection_date="Dec-2009"
FT                   /identified_by="Wang Jianhui"
FT                   /PCR_primers="fwd_name: GVA-ORF4-1F, fwd_seq:
FT                   ggctacgaccgaactatgtac, rev_name: GVA-ORF5-1R, rev_seq:
FT                   gtatgacaacctagcttgc"
FT                   /db_xref="taxon:35288"
FT   gene            <1..41
FT                   /gene="CP"
FT   CDS             <1..41
FT                   /codon_start=3
FT                   /gene="CP"
FT                   /product="truncated coat protein"
FT                   /db_xref="GOA:F2XXE0"
FT                   /db_xref="UniProtKB/TrEMBL:F2XXE0"
FT                   /protein_id="ADZ99519.1"
FT                   /translation="NTLFGYIAFGRY"
FT   gene            484..732
FT                   /gene="SS"
FT   CDS             484..732
FT                   /codon_start=1
FT                   /gene="SS"
FT                   /product="truncated silencing suppressor"
FT                   /note="ORF5"
FT                   /db_xref="InterPro:IPR008891"
FT                   /db_xref="UniProtKB/TrEMBL:F2XXE1"
FT                   /protein_id="ADZ99520.1"
FT                   /translation="MDDPSFLAGRSTYAKRRRARRMNVCKCGAIMHNNKNCKSSSISGH
FT                   KLDRLRFVKEGRVALTGETPVYRTWSSGWRLSIIYIY"
XX
SQ   Sequence 732 BP; 198 A; 150 C; 212 G; 172 T; 0 other;
     tgaatactct cttcgggtac atcgcctttg gtcggtacta gcaagaaggc ggttcattat        60
     ggggaggtag atatagtagg acctagagct agcaagaaaa cgggtatcga cccgcgcggg       120
     aagctggtgg tgtctgaatt ggtgggcagg atgaggactc tgagcgtagc cgttagtgaa       180
     ggacccgtca aaggagcaac actcaggcag atgtgcgaac ccttcgcaca aaacgctaac       240
     gatttcctcg tcttgatggc agagatggga acctactcac aattggcagc caagatgaca       300
     agatcaggct ttaaggagcc acaggttatg ttcgatttcg catcgggctt agatctgaaa       360
     gcactgacat tgcaagaagc cactgtgata caggctatgc attctcgcct ctttcggaca       420
     gagggtgcaa agggagtgtt caacgcccag gcttcggtcg gcgaacaggc tgttgtaata       480
     tagatggatg acccatcgtt tctcgcgggt aggtccacgt atgctaaacg taggcgcgct       540
     aggcgcatga atgtgtgtaa gtgtggtgca ataatgcaca ataataagaa ttgcaaatcc       600
     agtagtatct ctggtcacaa actcgataga ctgaggttcg tcaaagaggg aagagtagcc       660
     ttaacgggcg agactcctgt ttatcggacc tggtcaagtg ggtggagact gagtatcata       720
     tatatatatt ag                                                           732
//