Dbfetch

Dbfetch

ID   HQ671659; SV 1; linear; genomic RNA; STD; VRL; 756 BP.
XX
AC   HQ671659;
XX
DT   28-MAR-2011 (Rel. 108, Created)
DT   28-MAR-2011 (Rel. 108, Last updated, Version 1)
XX
DE   Grapevine virus A isolate 1-27-8-5 coat protein (CP) gene, partial cds; and
DE   silencing suppressor (SS) gene, complete cds.
XX
KW   .
XX
OS   Grapevine virus A
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus.
XX
RN   [1]
RP   1-756
RA   Wang J., Xi D., Lin H.;
RT   "Study on the genetic diversity of Chinese Grapevine virus A isolated from
RT   varieties of Vitis vinifera L. x Vitis labrusca L.";
RL   Unpublished.
XX
RN   [2]
RP   1-756
RA   Wang J., Xi D., Lin H.;
RT   ;
RL   Submitted (02-DEC-2010) to the INSDC.
RL   Life Science College, Sichuan University, Wang Jiang Lu Road No. 19,
RL   Chengdu, Sichuan 610065, China
XX
DR   MD5; be3f89af7cfc19845a10eba8f86d277a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..756
FT                   /organism="Grapevine virus A"
FT                   /host="Vitis vinifera x Vitis labrusca"
FT                   /isolate="1-27-8-5"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /isolation_source="bark scrapings"
FT                   /collection_date="Dec-2009"
FT                   /identified_by="Wang Jianhui"
FT                   /PCR_primers="fwd_name: GVA-ORF4-1F, fwd_seq:
FT                   ggctacgaccgaactatgtac, rev_name: GVA-ORF5-1R, rev_seq:
FT                   gtatgacaacctagcttgc"
FT                   /db_xref="taxon:35288"
FT   gene            <1..483
FT                   /gene="CP"
FT   CDS             <1..483
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:F2XXD4"
FT                   /db_xref="InterPro:IPR008879"
FT                   /db_xref="UniProtKB/TrEMBL:F2XXD4"
FT                   /protein_id="ADZ99513.1"
FT                   /translation="LNTLFGYIALVGTSRKAVHYGEVDIVGPKASKKTGIDPRGKLVVS
FT                   ELVGRMRTLSVAVSEGPVKGATLRQMCEPFAQNAYDFLVLMAEMGTYSQLATKMTRSGF
FT                   KEPQVMFDFASGLDLKALTLQEATVIQAMHSRLFRTEGAKGVFNAQSSIGEQAVEI"
FT   gene            484..756
FT                   /gene="SS"
FT   CDS             484..756
FT                   /codon_start=1
FT                   /gene="SS"
FT                   /product="silencing suppressor"
FT                   /note="ORF5"
FT                   /db_xref="InterPro:IPR008891"
FT                   /db_xref="UniProtKB/TrEMBL:F2XXD5"
FT                   /protein_id="ADZ99514.1"
FT                   /translation="MDDPSFLAGRSTFAERRRARRMNVCKCGAIMHNNKDCRSSSISSH
FT                   KLDRLRFVKEGRVALTGETPVYRTWVKWVETEYHIYIIETSDDED"
XX
SQ   Sequence 756 BP; 209 A; 156 C; 214 G; 177 T; 0 other;
     ctgaatactc tcttcgggta catcgccttg gtcggtacaa gcagaaaggc ggtccactat        60
     ggagaggtag atatagtagg tcctaaagct agcaaaaaga ctggaataga tccgagggga       120
     aagttggtcg tatcagaatt ggtcggcaga atgcgcacgc tgagtgtggc agtgagcgag       180
     gggcccgtca agggtgcaac tctgaggcag atgtgcgagc cattcgcaca gaacgcttat       240
     gatttcctcg tcctgatggc tgaaatgggc acatattcac agttagctac caagatgact       300
     aggtcaggct tcaaggagcc acaggttatg ttcgactttg cgtcgggctt agatctgaaa       360
     gcactgacac ttcaagaagc tactgtgata caggccatgc actctcgcct ctttcgcacg       420
     gaaggcgcaa agggagtatt taacgctcag tcatcaatcg gcgagcaggc tgtcgaaata       480
     tagatggatg acccatcgtt tctcgcgggt aggtccacgt ttgctgagcg taggcgcgct       540
     aggcgcatga atgtgtgtaa gtgtggtgca ataatgcaca ataataagga ttgtagatcc       600
     agtagtatct ctagtcataa actcgataga ctacggttcg tgaaagaggg aagagtagcc       660
     ttaacaggcg agactcctgt ttaccgaacc tgggtcaaat gggttgagac tgagtatcat       720
     atatatataa tagaaacctc agacgacgag gattag                                 756
//