Dbfetch

Dbfetch

ID   HQ671648; SV 1; linear; genomic RNA; STD; VRL; 780 BP.
XX
AC   HQ671648;
XX
DT   28-MAR-2011 (Rel. 108, Created)
DT   28-MAR-2011 (Rel. 108, Last updated, Version 1)
XX
DE   Grapevine virus A isolate 2-4-4-7 coat protein (CP) gene, partial cds; and
DE   mutant silencing suppressor (SS) gene, complete cds.
XX
KW   .
XX
OS   Grapevine virus A
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus.
XX
RN   [1]
RP   1-780
RA   Wang J., Xi D., Lin H.;
RT   "Study on the genetic diversity of Chinese Grapevine virus A isolated from
RT   varieties of Vitis vinifera L. x Vitis labrusca L.";
RL   Unpublished.
XX
RN   [2]
RP   1-780
RA   Wang J., Xi D., Lin H.;
RT   ;
RL   Submitted (02-DEC-2010) to the INSDC.
RL   Life Science College, Sichuan University, Wang Jiang Lu Road No. 19,
RL   Chengdu, Sichuan 610065, China
XX
DR   MD5; f3871ae652901977eb750061a747c044.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..780
FT                   /organism="Grapevine virus A"
FT                   /host="Vitis vinifera x Vitis labrusca"
FT                   /isolate="2-4-4-7"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /isolation_source="bark scrapings"
FT                   /collection_date="Dec-2009"
FT                   /identified_by="Wang Jianhui"
FT                   /PCR_primers="fwd_name: GVA-ORF4-1F, fwd_seq:
FT                   ggctacgaccgaactatgtac, rev_name: GVA-ORF5-1R, rev_seq:
FT                   gtatgacaacctagcttgc"
FT                   /db_xref="taxon:35288"
FT   gene            <1..483
FT                   /gene="CP"
FT   CDS             <1..483
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:F2XXB2"
FT                   /db_xref="InterPro:IPR008879"
FT                   /db_xref="UniProtKB/TrEMBL:F2XXB2"
FT                   /protein_id="ADZ99491.1"
FT                   /translation="LNTLFGYIALVGTSKKAVHYGEVDIVGPRASKKTGIDPRGKLVVS
FT                   ELVGRMRTLSVAVSEGPVKGATLRQMCEPFAQNAYDFLVLMAEMGTYSQLAAKMTRSGF
FT                   KEPQVMFDFASGLDLKALTLQEATVIQAMHSRLFRTEGAKGVFNAQASVGEQAVEI"
FT   gene            484..780
FT                   /gene="SS"
FT   CDS             484..780
FT                   /codon_start=1
FT                   /gene="SS"
FT                   /product="mutant silencing suppressor"
FT                   /note="ORF5"
FT                   /db_xref="InterPro:IPR008891"
FT                   /db_xref="UniProtKB/TrEMBL:F2XXB3"
FT                   /protein_id="ADZ99492.1"
FT                   /translation="MDDPSFLAGRSTYAKRRRARRMNVCKCGAIMHNNKDCKSSSISGH
FT                   KLDRLRFVKEGRVALTGETPVYRTWVKWVETEYHIYILETSDDEDWSSILAKE"
XX
SQ   Sequence 780 BP; 208 A; 160 C; 229 G; 183 T; 0 other;
     ctgaatactc tcttcgggta catcgccttg gtcggtacta gcaaaaaggc ggttcattat        60
     ggggaggtgg atatagtagg acctagagct agcaagaaaa cgggtatcga cccgcgcggg       120
     aagctggtgg tgtctgaatt ggtgggcagg atgaggactc taagcgtggc cgttagtgaa       180
     ggacccgtca aaggtgcaac actcaggcag atgtgcgaac ccttcgcaca aaacgcttac       240
     gatttcctcg tcttgatggc agagatggga acctactcac agttggcagc caagatgaca       300
     agatcaggct ttaaggagcc acaggttatg ttcgatttcg catcgggctt agatctgaaa       360
     gcactgacat tgcaagaagc cactgtgata caggctatgc attctcgcct ctttcggaca       420
     gagggtgcaa agggagtgtt caacgcccag gcttcggtcg gcgaacaggc tgttgaaata       480
     tagatggatg acccatcgtt tctcgcgggt aggtccacgt atgctaagcg taggcgcgct       540
     aggcgcatga atgtgtgtaa gtgtggtgca ataatgcaca ataataagga ttgcaaatcc       600
     agtagtatct ctggtcacaa actcgataga ctgaggttcg tcaaagaggg aagagtagcc       660
     ttaacgggcg agactcctgt ttatcggacc tgggtcaagt gggtggagac tgagtatcat       720
     atatatatat tagaaacctc agacgatgag gattggtcgt ctatcctagc taaggagtag       780
//