Dbfetch

Dbfetch

ID   HQ671643; SV 1; linear; genomic RNA; STD; VRL; 756 BP.
XX
AC   HQ671643;
XX
DT   28-MAR-2011 (Rel. 108, Created)
DT   28-MAR-2011 (Rel. 108, Last updated, Version 1)
XX
DE   Grapevine virus A isolate 9-27-10-4 coat protein (CP) gene, partial cds;
DE   and silencing suppressor (SS) gene, complete cds.
XX
KW   .
XX
OS   Grapevine virus A
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus.
XX
RN   [1]
RP   1-756
RA   Wang J., Xi D., Lin H.;
RT   "Study on the genetic diversity of Chinese Grapevine virus A isolated from
RT   varieties of Vitis vinifera L. x Vitis labrusca L.";
RL   Unpublished.
XX
RN   [2]
RP   1-756
RA   Wang J., Xi D., Lin H.;
RT   ;
RL   Submitted (02-DEC-2010) to the INSDC.
RL   Life Science College, Sichuan University, Wang Jiang Lu Road No. 19,
RL   Chengdu, Sichuan 610065, China
XX
DR   MD5; 1b5583b09a8133a17c4f9e1622e8eb19.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..756
FT                   /organism="Grapevine virus A"
FT                   /host="Vitis vinifera x Vitis labrusca"
FT                   /isolate="9-27-10-4"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /isolation_source="bark scrapings"
FT                   /collection_date="Dec-2009"
FT                   /identified_by="Wang Jianhui"
FT                   /PCR_primers="fwd_name: GVA-ORF4-1F, fwd_seq:
FT                   ggctacgaccgaactatgtac, rev_name: GVA-ORF5-1R, rev_seq:
FT                   gtatgacaacctagcttgc"
FT                   /db_xref="taxon:35288"
FT   gene            <1..483
FT                   /gene="CP"
FT   CDS             <1..483
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:F2XXA2"
FT                   /db_xref="InterPro:IPR008879"
FT                   /db_xref="UniProtKB/TrEMBL:F2XXA2"
FT                   /protein_id="ADZ99481.1"
FT                   /translation="LNTLFGYIALVGTSKKATHYGEVDIVGPNASKKTGLDPRGKINVA
FT                   SMVARMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLATKMTRSGF
FT                   KEPQVMFDFASGMDLKTLTLQEATVIQSMHSRLFRTEGAKGVFNAQSSVGEQAVEI"
FT   gene            484..756
FT                   /gene="SS"
FT   CDS             484..756
FT                   /codon_start=1
FT                   /gene="SS"
FT                   /product="silencing suppressor"
FT                   /note="ORF5"
FT                   /db_xref="InterPro:IPR008891"
FT                   /db_xref="UniProtKB/TrEMBL:F2XX75"
FT                   /protein_id="ADZ99482.1"
FT                   /translation="MDDPSFLTGKSTYAKRRRARRMNVCRCGAILHNNKDCKSSTISGH
FT                   KLDRLRFVKEGRVALEGETPVYRTWIKWVETEYHINIIETSDDEE"
XX
SQ   Sequence 756 BP; 209 A; 149 C; 213 G; 185 T; 0 other;
     ctgaatactc tcttcgggta catcgccttg gtcggaacaa gcaagaaggc gactcattat        60
     ggggaggtag atatagtagg acctaatgct agtaagaaga ctggtctgga tcctaggggt       120
     aaaataaacg tggctagcat ggtagcgcgt atgagaactc ttagtgcagc cgtaagcgag       180
     ggacctgtca aaggggcgac tctaaggcag atgtgcgaac cgttcgctca gaacgcttac       240
     gacttcctgg ttgtcatggc tgagttaggt acgtatacgc agttagcaac taagatgact       300
     aggtcaggtt tcaaggaacc acaggttatg tttgactttg cgtcgggcat ggacttgaag       360
     accttaactt tgcaggaagc tactgtcata caatccatgc actctcgtct ctttcgcact       420
     gagggggcga agggagtgtt caacgctcag tccagcgtcg gggagcaggc tgtcgagata       480
     tagatggatg acccatcgtt tctcacgggt aaatctactt atgctaaacg taggagggcc       540
     aggcgtatga atgtgtgtag gtgtggtgct atattgcaca ataataagga ttgcaagtct       600
     agtacaatct caggtcataa actcgatcga ctccggttcg tcaaagaggg aagagtagcc       660
     ctagagggcg agactcctgt ttaccgaact tggatcaagt gggttgagac cgagtatcat       720
     ataaatataa tagaaacctc agatgatgag gaataa                                 756
//