ID HQ670666; SV 1; linear; genomic RNA; STD; VRL; 3510 BP. XX AC HQ670666; XX DT 27-JUN-2011 (Rel. 109, Created) DT 27-JUN-2011 (Rel. 109, Last updated, Version 1) XX DE Rice black streaked dwarf virus isolate Korean B' spike structural protein DE gene, complete cds. XX KW . XX OS Rice black streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-3510 RA Wang Y., Choi J.Y., Roh J.Y., Je Y.H.; RT ; RL Submitted (02-DEC-2010) to the INSDC. RL Department of Agriculture Biotechnology, College of Agriculture and Life RL Sciences, Seoul National University, 599 Gwanakno, Gwanak-gu, Seoul RL 151-742, Korea XX DR MD5; bdd30898a1714bc2aa03f410a3a7432e. XX FH Key Location/Qualifiers FH FT source 1..3510 FT /organism="Rice black streaked dwarf virus" FT /host="Oryza sativa L." FT /isolate="Korean" FT /mol_type="genomic RNA" FT /country="South Korea" FT /db_xref="taxon:10990" FT CDS 1..3510 FT /codon_start=1 FT /product="B' spike structural protein" FT /note="ORF4" FT /db_xref="UniProtKB/TrEMBL:F8SRK8" FT /protein_id="AEI60137.1" FT /translation="MDPGQVLKYLLSQNYEIKIQQLEQWQKQMEAAGYTSEYLNQSSDV FT LKVKSKIEESKRRLFFISANYWQGSLFTKTVAPNNLFLGFSECSGVNKTIFDAKNCDFG FT RFQLSFNCIPKYWILSGVLDELICYDKSKTKVTISKLKNKISICINDFKYIVPIINSFS FT FLSDDSDVVIDENCEFDILLRISQSFNEIMIDVYNFSFDDSNLNLEFRPTSIKFKGDAN FT YFSVSSNLIFNSIDGYLNRDNLNMRKYLCYAISMNNLNMINDSINKWESKQLAKKKNLV FT SNLHQLVLNAMISISSLEKDVARVKSLKMELSYQRNISIHFPNHRIFLNKYPHNLFSPS FT LKTQFVGWNFTYGERDRFISPIVCDVETKLKTNSSIISNAFTSYFQCNSFGNPDNMFLL FT NVTDKNGNTKKVICEAVYSLKYKDFKYVDLKSINKKDNFQNQVYFFGLSEIELYDEHPK FT LQALSMVSENEGDLYHLFYSNCSLVLSFKIISESIEYLGVVSPKFTSEFEYNGKTLKLS FT GNLTLSEDFDGVQMKKCLTSEEFVLIEEVKCLFTSFICEGKRSSSKTKFNDKTWPGIRS FT RSYDNDAYLSAIQAHCHFLNLNNPFKSYDNYSDILYSANDNFHYVEANGCFTERKNYLY FT WDVPISTFEMMFDESPCVKLSNQSISTFYVNYRHLYEVVEGKNHPCLLSCKHYVEDYSI FT NQIDSPPILFLPFNRPVDIIYLEQSSGDEVLNEMKIISFEVKEFTAYVLPENLNTTMNI FT VGKLLNYESELELVYQTNNVISDMMNNFDKRLSDLEKFCDFLDKSYIKKAGSSTSLYHL FT LGDIFTFVGEICVLQFPILGFCFILTGIMVDALGKITQEDIFDGISEIAFGGLLLCLGK FT RKPKFTYLEELGFGRRRASSNSYISEMASSIGRRRSYSSYHHYESINDLSPSLSIRDRI FT MNQKRSHNPSVFDLHHNSGIILELKQKQKENYSLLNSSYSRMKRSISNVINDEVINYKL FT SCDNPSSCEVYELCIKTFDYYPILLDDNSFFIIKIQFKIKITSNPVKMRIEDIERSYFH FT TSDASRFRVFDAAKFDVIKHLNKSLLSFTFNEISNYLCVISLLSKTSSIDNMLIENHDK FT LYDTLYISNHKSYMSSDPIHLRQVDFTIFKTMHTYSFSDHAPDDSYFKMISSIVKHPEI FT LRF" XX SQ Sequence 3510 BP; 1188 A; 495 C; 562 G; 1265 T; 0 other; atggatccag gacaagtcct caaatacctt ttgtctcaga actatgaaat caaaatacaa 60 caactagaac aatggcaaaa acagatggaa gcagcaggct acacaagcga atacttaaac 120 caatcttcag acgtgcttaa agttaaaagt aaaattgaag aatcaaaaag acggttattt 180 tttatcagtg ctaattactg gcaaggaagt ttatttacta aaacagttgc tccaaacaat 240 ttgtttcttg gatttagtga atgctcaggt gttaataaga ctatttttga tgctaaaaat 300 tgtgatttcg gacggttcca gttgagtttt aattgcattc ctaaatattg gatattgtca 360 ggtgttcttg atgaattgat ttgctatgat aaaagtaaaa caaaagtaac aattagcaag 420 ttaaaaaata aaatttcaat ttgtattaat gattttaagt atattgttcc gattataaac 480 agtttctcct ttttatcaga cgattcagat gtcgtaattg atgaaaattg tgaattcgac 540 attttgttaa ggatttctca gtcttttaat gaaataatga ttgatgttta taattttagt 600 tttgatgatt ctaatcttaa tcttgagttt agaccgactt ctatcaaatt taaaggtgac 660 gctaattact tttccgtttc ttctaattta atttttaata gtattgacgg ttacttgaat 720 cgggataatt taaatatgag gaaatatctt tgttatgcta taagtatgaa taatttaaat 780 atgatcaatg actccataaa taaatgggaa tcgaaacaac ttgccaaaaa gaagaattta 840 gttagtaact tacatcagtt ggttttaaat gctatgataa gtatttcttc tctagaaaaa 900 gatgtagcaa gagtcaaatc tttaaaaatg gagttaagtt accaaagaaa tatctcaatt 960 catttcccaa atcatagaat ctttttgaat aagtaccctc ataatttgtt ctccccatct 1020 ttgaaaacgc aatttgtcgg ttggaatttt acttatggtg aaagagatag attcatttct 1080 cctattgttt gtgatgtaga gacaaaatta aaaactaatt catccatcat tagtaacgct 1140 tttacttctt attttcaatg caatagtttt ggaaacccgg ataatatgtt tttgcttaac 1200 gtaacagaca agaatggtaa tactaaaaaa gtaatttgtg aagccgttta ttctctaaag 1260 tacaaagatt ttaagtatgt tgatttgaaa tcaataaata aaaaagataa ttttcagaat 1320 caagtgtatt ttttcggttt aagtgaaatc gagttgtatg atgaacatcc aaaacttcaa 1380 gcattatcga tggttagcga aaacgaaggt gatctctatc atttgtttta cagtaattgt 1440 tctctagttc tttcatttaa aattatttct gagagtatcg aatatttggg tgttgtatct 1500 cctaagttta caagtgaatt tgaatataat ggtaagactt taaagctttc tggaaactta 1560 actttaagtg aagactttga tggtgttcaa atgaagaaat gcttaacgtc agaagagttt 1620 gttttaattg aagaagttaa atgcctattc acctctttta tttgcgaagg caaacgctcg 1680 tcatctaaga ctaaatttaa cgataaaact tggcccggca ttagaagtag atcttacgat 1740 aatgatgctt atttaagtgc tattcaagca cattgtcatt ttcttaattt aaataatcct 1800 tttaaatctt atgacaatta tagtgacatt ttgtattctg ctaacgataa ttttcattat 1860 gttgaagcga atggttgttt tactgaaaga aaaaattatc tttattggga tgttccaatt 1920 tctacttttg aaatgatgtt tgatgagtca ccatgtgtaa aattaagtaa tcaaagcatc 1980 tcaacctttt acgtcaatta tcgtcatctc tatgaagtag ttgaaggtaa gaatcaccct 2040 tgtctccttt cttgtaagca ttatgttgaa gattattcta taaatcagat tgattcccct 2100 cctattttat ttttgccttt taacagacct gtagatataa tttacttaga acaatcctca 2160 ggcgatgaag ttcttaatga aatgaaaatt atatcatttg aagtcaaaga gtttactgca 2220 tatgtgttgc ctgaaaatct aaacactaca atgaacattg taggcaaatt attaaattat 2280 gaatctgaat tggagttggt ttatcaaacg aataatgtca tttctgacat gatgaataat 2340 ttcgataaga gattatctga tttggagaag ttttgtgatt ttttggataa aagttatatt 2400 aaaaaagctg gaagctcaac gtcactttat catctgcttg gcgacatttt tacttttgtt 2460 ggagaaattt gtgttttgca atttccgatc ttaggatttt gttttattct tacagggatt 2520 atggttgatg cattagggaa aattactcaa gaagatattt tcgatggcat cagtgaaata 2580 gcatttggtg gtttattatt gtgtttagga aagcgtaaac caaagtttac ttatttagaa 2640 gaactgggat tcggtcgtcg tcgagcctct tctaattcat atatcagtga aatggcatct 2700 tcaattggca gaagaagaag ttattccagt tatcatcact atgaaagcat caatgattta 2760 agcccgtcat tgtctattag agatagaatc atgaatcaaa aacgttcgca caaccccagt 2820 gtttttgatt tgcatcataa ttcaggaata attttagagt taaagcaaaa gcaaaaagag 2880 aattattcac ttctcaattc cagctattct agaatgaaac gatctatcag taatgttata 2940 aacgatgaag taataaatta taaactttct tgtgataacc ccagttcgtg tgaggtttat 3000 gagttatgta tcaaaacttt tgattattat ccaatccttt tggacgacaa ttcttttttc 3060 ataattaaaa tacagtttaa aatcaaaatc acatctaatc cagtcaaaat gagaattgaa 3120 gatatcgaga gaagttattt tcatacttca gatgcttcaa gatttcgagt ctttgatgct 3180 gctaaatttg acgtcatcaa acatttaaat aagtccttat tgtcttttac ttttaatgag 3240 atatccaact atttatgtgt catcagtctc ctgtcaaaaa ccagttcaat agacaatatg 3300 ttaatcgaga atcatgacaa gttgtatgat actttgtaca tttcaaacca taaatcctac 3360 atgtccagtg accctattca tttacgtcaa gtagacttca ctatatttaa aacaatgcat 3420 acttattctt tttcagatca tgctcctgat gacagttatt ttaaaatgat ctcaagcatt 3480 gttaaacacc ctgaaattct gagattttaa 3510 //